RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 ANKARQ7Z5J8 1434 aa12.47□□□□□ -0.41
LMO3-227ENST00000541764 BMP2KLQ5H9B9 411 aa12.46□□□□□ -0.41
LMO3-227ENST00000541764 CHD1LQ86WJ1 897 aa12.46□□□□□ -0.41
LMO3-227ENST00000541764 ANTXR1Q9H6X2 564 aa12.46□□□□□ -0.41
LMO3-227ENST00000541764 EIF5BO60841 1220 aaKnown RBP12.46□□□□□ -0.42
LMO3-227ENST00000541764 INTS3Q68E01 1043 aaKnown RBP12.46□□□□□ -0.42
LMO3-227ENST00000541764 C8orf58Q8NAV2 365 aa12.46□□□□□ -0.42
LMO3-227ENST00000541764 THUMPD2Q9BTF0 503 aaKnown RBP12.46□□□□□ -0.42
LMO3-227ENST00000541764 KDRP35968 1356 aa12.46□□□□□ -0.42
LMO3-227ENST00000541764 USP54Q70EL1 1684 aa12.46□□□□□ -0.42
LMO3-227ENST00000541764 PEAK1Q9H792 1746 aa12.45□□□□□ -0.42
LMO3-227ENST00000541764 RBM25P49756 843 aaKnown RBP12.45□□□□□ -0.42
LMO3-227ENST00000541764 GSE1Q14687 1217 aa12.45□□□□□ -0.42
LMO3-227ENST00000541764 C22orf23Q9BZE7 217 aa12.45□□□□□ -0.42
LMO3-227ENST00000541764 XRN1Q8IZH2 1706 aaKnown RBP12.45□□□□□ -0.42
LMO3-227ENST00000541764 SBNO1A3KN83 1393 aa12.44□□□□□ -0.42
LMO3-227ENST00000541764 TBC1D2Q9BYX2 928 aa12.44□□□□□ -0.42
LMO3-227ENST00000541764 CRB1P82279 1406 aa12.44□□□□□ -0.42
LMO3-227ENST00000541764 FLT4P35916 1363 aa12.43□□□□□ -0.42
LMO3-227ENST00000541764 SULT6B1Q6IMI4 303 aa12.43□□□□□ -0.42
LMO3-227ENST00000541764 THEMISQ8N1K5 641 aaPredicted RBP12.43□□□□□ -0.42
LMO3-227ENST00000541764 AMOTL2Q9Y2J4 779 aa12.43□□□□□ -0.42
LMO3-227ENST00000541764 PTPRCP08575 1304 aa12.43□□□□□ -0.42
LMO3-227ENST00000541764 HTATSF1O43719 755 aaKnown RBP12.42□□□□□ -0.42
LMO3-227ENST00000541764 RGS12O14924 1447 aa12.42□□□□□ -0.42
LMO3-227ENST00000541764 SIRT2Q8IXJ6 389 aa12.41□□□□□ -0.42
LMO3-227ENST00000541764 SNX21Q969T3 373 aa12.41□□□□□ -0.42
LMO3-227ENST00000541764 SOS1Q07889 1333 aaPredicted RBP12.41□□□□□ -0.42
LMO3-227ENST00000541764 FAM83GA6ND36 823 aa12.4□□□□□ -0.42
LMO3-227ENST00000541764 FRAT2O75474 233 aaPredicted RBP12.4□□□□□ -0.42
LMO3-227ENST00000541764 AEBP1Q8IUX7 1158 aa12.4□□□□□ -0.42
LMO3-227ENST00000541764 IGSF1Q8N6C5 1336 aa12.4□□□□□ -0.42
LMO3-227ENST00000541764 FMN2Q9NZ56 1722 aa12.4□□□□□ -0.42
LMO3-227ENST00000541764 NCOA3Q9Y6Q9 1424 aa12.4□□□□□ -0.42
LMO3-227ENST00000541764 HSP90AB2PQ58FF8 381 aa12.4□□□□□ -0.43
LMO3-227ENST00000541764 RPAP2Q8IXW5 612 aaPredicted RBP12.4□□□□□ -0.43
LMO3-227ENST00000541764 LNPKQ9C0E8 428 aa12.4□□□□□ -0.43
LMO3-227ENST00000541764 DCTPP1Q9H773 170 aa12.4□□□□□ -0.43
LMO3-227ENST00000541764 BABAM1Q9NWV8 329 aa12.4□□□□□ -0.43
LMO3-227ENST00000541764 MAP3K19Q56UN5 1328 aa12.39□□□□□ -0.43
LMO3-227ENST00000541764 RTL1A6NKG5 1358 aa12.39□□□□□ -0.43
LMO3-227ENST00000541764 ANKRD44Q8N8A2 993 aa12.39□□□□□ -0.43
LMO3-227ENST00000541764 PLSCR2Q9NRY7 297 aa12.39□□□□□ -0.43
LMO3-227ENST00000541764 PIK3C2AO00443 1686 aa12.38□□□□□ -0.43
LMO3-227ENST00000541764 ATP10DQ9P241 1426 aa12.38□□□□□ -0.43
LMO3-227ENST00000541764 FER1L4A9Z1Z3 1794 aa12.38□□□□□ -0.43
LMO3-227ENST00000541764 MFAP1P55081 439 aaKnown RBP12.38□□□□□ -0.43
LMO3-227ENST00000541764 DCTN1Q14203 1278 aa12.38□□□□□ -0.43
LMO3-227ENST00000541764 ANKRD45Q5TZF3 282 aa12.38□□□□□ -0.43
LMO3-227ENST00000541764 GAS2L2Q8NHY3 880 aa12.38□□□□□ -0.43
LMO3-227ENST00000541764 SLC26A8Q96RN1 970 aa12.38□□□□□ -0.43
LMO3-227ENST00000541764 LRRC37A3O60309 1634 aa12.38□□□□□ -0.43
LMO3-227ENST00000541764 C19orf67A6NJJ6 358 aa12.37□□□□□ -0.43
LMO3-227ENST00000541764 GABBR2O75899 941 aa12.37□□□□□ -0.43
LMO3-227ENST00000541764 ELL2O00472 640 aaPredicted RBP12.36□□□□□ -0.43
LMO3-227ENST00000541764 CEBPAP49715 358 aaPredicted RBP12.36□□□□□ -0.43
LMO3-227ENST00000541764 CHMP5Q9NZZ3 219 aa12.36□□□□□ -0.43
LMO3-227ENST00000541764 DDIT3P35638 169 aa12.35□□□□□ -0.43
LMO3-227ENST00000541764 CIZ1Q9ULV3 898 aaPredicted RBP12.35□□□□□ -0.43
LMO3-227ENST00000541764 NWD1Q149M9 1564 aa12.34□□□□□ -0.43
LMO3-227ENST00000541764 MTHFSDQ2M296 383 aaKnown RBP12.34□□□□□ -0.43
LMO3-227ENST00000541764 MCM10Q7L590 875 aa12.34□□□□□ -0.43
LMO3-227ENST00000541764 HSCBQ8IWL3 235 aa12.34□□□□□ -0.43
LMO3-227ENST00000541764 NGDNQ8NEJ9 315 aaKnown RBP12.34□□□□□ -0.43
LMO3-227ENST00000541764 MARF1Q9Y4F3 1742 aaKnown RBP12.34□□□□□ -0.43
LMO3-227ENST00000541764 CDC45O75419 566 aa12.34□□□□□ -0.43
LMO3-227ENST00000541764 CEP85Q6P2H3 762 aa12.34□□□□□ -0.43
LMO3-227ENST00000541764 PLEKHM2Q8IWE5 1019 aa12.34□□□□□ -0.43
LMO3-227ENST00000541764 RTF1Q92541 710 aaKnown RBP12.34□□□□□ -0.43
LMO3-227ENST00000541764 EYA1Q99502 592 aa12.34□□□□□ -0.43
LMO3-227ENST00000541764 C1orf115Q9H7X2 142 aa12.34□□□□□ -0.43
LMO3-227ENST00000541764 CEP170BQ9Y4F5 1589 aaPredicted RBP12.33□□□□□ -0.44
LMO3-227ENST00000541764 CCT4P50991 539 aaKnown RBP12.33□□□□□ -0.44
LMO3-227ENST00000541764 TBC1D9Q6ZT07 1266 aa12.33□□□□□ -0.44
LMO3-227ENST00000541764 SLKQ9H2G2 1235 aaPredicted RBP12.33□□□□□ -0.44
LMO3-227ENST00000541764 PRKAR2AP13861 404 aaKnown RBP12.32□□□□□ -0.44
LMO3-227ENST00000541764 AMPHP49418 695 aa12.32□□□□□ -0.44
LMO3-227ENST00000541764 KIF2CQ99661 725 aa12.32□□□□□ -0.44
LMO3-227ENST00000541764 ATF5Q9Y2D1 282 aaPredicted RBP12.32□□□□□ -0.44
LMO3-227ENST00000541764 RGPD8O14715 1765 aaPredicted RBP12.31□□□□□ -0.44
LMO3-227ENST00000541764 HOXC9P31274 260 aa12.31□□□□□ -0.44
LMO3-227ENST00000541764 TTC22Q5TAA0 569 aa12.31□□□□□ -0.44
LMO3-227ENST00000541764 OSBPL3Q9H4L5 887 aa12.31□□□□□ -0.44
LMO3-227ENST00000541764 TSPYL4Q9UJ04 414 aa12.31□□□□□ -0.44
LMO3-227ENST00000541764 MSH6P52701 1360 aa12.3□□□□□ -0.44
LMO3-227ENST00000541764 PHRF1Q9P1Y6 1649 aaKnown RBP12.3□□□□□ -0.44
LMO3-227ENST00000541764 NUTM2FA1L443 756 aa12.3□□□□□ -0.44
LMO3-227ENST00000541764 HMMRO75330 724 aa12.3□□□□□ -0.44
LMO3-227ENST00000541764 MCM4P33991 863 aa12.3□□□□□ -0.44
LMO3-227ENST00000541764 KRT24Q2M2I5 525 aa12.3□□□□□ -0.44
LMO3-227ENST00000541764 PXDNLA1KZ92 1463 aa12.3□□□□□ -0.44
LMO3-227ENST00000541764 N4BP2Q86UW6 1770 aaPredicted RBP12.29□□□□□ -0.44
LMO3-227ENST00000541764 CACNA1FO60840 1977 aa12.29□□□□□ -0.44
LMO3-227ENST00000541764 GNAT3A8MTJ3 354 aa12.29□□□□□ -0.44
LMO3-227ENST00000541764 GSPT1P15170 499 aaKnown RBP12.29□□□□□ -0.44
LMO3-227ENST00000541764 KCNA6P17658 529 aa12.29□□□□□ -0.44
LMO3-227ENST00000541764 NLRP6P59044 892 aa12.29□□□□□ -0.44
LMO3-227ENST00000541764 ZNF142P52746 1687 aaPredicted RBP12.29□□□□□ -0.44
LMO3-227ENST00000541764 CHD2O14647 1828 aaKnown RBP12.29□□□□□ -0.44
LMO3-227ENST00000541764 MAP3K5Q99683 1374 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms