RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 PES1O00541 588 aaKnown RBP17.09■□□□□ 0.33
COLCA1-204ENST00000540738 ST5P78524 1137 aa17.09■□□□□ 0.33
COLCA1-204ENST00000540738 RPAP2Q8IXW5 612 aaPredicted RBP17.09■□□□□ 0.33
COLCA1-204ENST00000540738 MSNP26038 577 aaKnown RBP17.09■□□□□ 0.33
COLCA1-204ENST00000540738 IFIT5Q13325 482 aaKnown RBP17.09■□□□□ 0.33
COLCA1-204ENST00000540738 TSR1Q2NL82 804 aaKnown RBP17.09■□□□□ 0.33
COLCA1-204ENST00000540738 MYD88Q99836 296 aa17.09■□□□□ 0.33
COLCA1-204ENST00000540738 SNRPA1P09661 255 aaKnown RBP17.08■□□□□ 0.33
COLCA1-204ENST00000540738 RRP12Q5JTH9 1297 aaKnown RBP17.08■□□□□ 0.33
COLCA1-204ENST00000540738 FOXD4L5Q5VV16 416 aaPredicted RBP17.08■□□□□ 0.33
COLCA1-204ENST00000540738 FOXD4L4Q8WXT5 416 aaPredicted RBP17.08■□□□□ 0.33
COLCA1-204ENST00000540738 PDE4AP27815 886 aa17.08■□□□□ 0.33
COLCA1-204ENST00000540738 POLD1P28340 1107 aa17.08■□□□□ 0.33
COLCA1-204ENST00000540738 MIS18AQ9NYP9 233 aa17.08■□□□□ 0.33
COLCA1-204ENST00000540738 AACSQ86V21 672 aa17.08■□□□□ 0.32
COLCA1-204ENST00000540738 R3HCC1Q9Y3T6 440 aaKnown RBP17.08■□□□□ 0.32
COLCA1-204ENST00000540738 SLF2Q8IX21 1173 aa17.07■□□□□ 0.32
COLCA1-204ENST00000540738 FKBP4Q02790 459 aaKnown RBP eCLIP17.07■□□□□ 0.32
COLCA1-204ENST00000540738 ZNF287Q9HBT7 754 aa17.07■□□□□ 0.32
COLCA1-204ENST00000540738 ANKRD20A12PQ8NF67 263 aa17.07■□□□□ 0.32
COLCA1-204ENST00000540738 CDC5LQ99459 802 aaKnown RBP17.07■□□□□ 0.32
COLCA1-204ENST00000540738 DDX46Q7L014 1031 aaKnown RBP17.06■□□□□ 0.32
COLCA1-204ENST00000540738 RBM19Q9Y4C8 960 aaKnown RBP17.06■□□□□ 0.32
COLCA1-204ENST00000540738 DDX11L8A8MPP1 907 aa17.06■□□□□ 0.32
COLCA1-204ENST00000540738 CCDC85AQ96PX6 553 aaPredicted RBP17.06■□□□□ 0.32
COLCA1-204ENST00000540738 C1orf115Q9H7X2 142 aa17.06■□□□□ 0.32
COLCA1-204ENST00000540738 ANKRD18BA2A2Z9 1011 aa17.06■□□□□ 0.32
COLCA1-204ENST00000540738 CTNNA3Q9UI47 895 aa17.06■□□□□ 0.32
COLCA1-204ENST00000540738 TPM1P09493 284 aa17.06■□□□□ 0.32
COLCA1-204ENST00000540738 SLC4A3P48751 1232 aa17.05■□□□□ 0.32
COLCA1-204ENST00000540738 ALDH1L2Q3SY69 923 aa17.05■□□□□ 0.32
COLCA1-204ENST00000540738 DCTN1Q14203 1278 aa17.05■□□□□ 0.32
COLCA1-204ENST00000540738 MVPQ14764 893 aaKnown RBP17.05■□□□□ 0.32
COLCA1-204ENST00000540738 DNAAF4Q8WXU2 420 aa17.04■□□□□ 0.32
COLCA1-204ENST00000540738 THUMPD2Q9BTF0 503 aaKnown RBP17.04■□□□□ 0.32
COLCA1-204ENST00000540738 TPM3P06753 285 aa17.04■□□□□ 0.32
COLCA1-204ENST00000540738 CNKSR2Q8WXI2 1034 aa17.04■□□□□ 0.32
COLCA1-204ENST00000540738 VPS37CA5D8V6 355 aaPredicted RBP17.04■□□□□ 0.32
COLCA1-204ENST00000540738 SLC5A1P13866 664 aa17.04■□□□□ 0.32
COLCA1-204ENST00000540738 IPO9Q96P70 1041 aaKnown RBP17.03■□□□□ 0.32
COLCA1-204ENST00000540738 GCP02774 474 aa17.03■□□□□ 0.32
COLCA1-204ENST00000540738 ATP6V1AP38606 617 aa17.03■□□□□ 0.32
COLCA1-204ENST00000540738 TDO2P48775 406 aa17.03■□□□□ 0.32
COLCA1-204ENST00000540738 ABCF2Q9UG63 623 aa17.03■□□□□ 0.32
COLCA1-204ENST00000540738 BECN2A8MW95 431 aa17.03■□□□□ 0.32
COLCA1-204ENST00000540738 NBPF6Q5VWK0 638 aa17.03■□□□□ 0.32
COLCA1-204ENST00000540738 NBPF5PQ86XG9 351 aaPredicted RBP17.03■□□□□ 0.32
COLCA1-204ENST00000540738 CABLES1Q8TDN4 633 aa17.03■□□□□ 0.32
COLCA1-204ENST00000540738 NBPF4Q96M43 638 aa17.03■□□□□ 0.32
COLCA1-204ENST00000540738 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.03■□□□□ 0.32
COLCA1-204ENST00000540738 C6orf229H3BNL8 230 aa17.02■□□□□ 0.32
COLCA1-204ENST00000540738 FLT4P35916 1363 aa17.02■□□□□ 0.32
COLCA1-204ENST00000540738 GOLGA6L19H0YKK7 550 aa17.02■□□□□ 0.32
COLCA1-204ENST00000540738 ZNF622Q969S3 477 aaKnown RBP eCLIP17.02■□□□□ 0.32
COLCA1-204ENST00000540738 ACSBG1Q96GR2 724 aa17.02■□□□□ 0.32
COLCA1-204ENST00000540738 ZBTB3Q9H5J0 574 aa17.02■□□□□ 0.31
COLCA1-204ENST00000540738 AKAP4Q5JQC9 854 aa17.01■□□□□ 0.31
COLCA1-204ENST00000540738 WWC2Q6AWC2 1192 aa17.01■□□□□ 0.31
COLCA1-204ENST00000540738 YTHDC2Q9H6S0 1430 aaKnown RBP17.01■□□□□ 0.31
COLCA1-204ENST00000540738 BCAR3O75815 825 aa17.01■□□□□ 0.31
COLCA1-204ENST00000540738 SLAIN2Q9P270 581 aa17.01■□□□□ 0.31
COLCA1-204ENST00000540738 ARHGEF10O15013 1369 aa17.01■□□□□ 0.31
COLCA1-204ENST00000540738 RAB11FIP3O75154 756 aa17.01■□□□□ 0.31
COLCA1-204ENST00000540738 IDH1O75874 414 aaKnown RBP17.01■□□□□ 0.31
COLCA1-204ENST00000540738 CWC25Q9NXE8 425 aaPredicted RBP17.01■□□□□ 0.31
COLCA1-204ENST00000540738 GZF1Q9H116 711 aaPredicted RBP17.01■□□□□ 0.31
COLCA1-204ENST00000540738 TARBP1Q13395 1621 aaKnown RBP17.01■□□□□ 0.31
COLCA1-204ENST00000540738 KIF1BPQ96EK5 621 aa17.01■□□□□ 0.31
COLCA1-204ENST00000540738 DZIP1Q86YF9 867 aaKnown RBP17■□□□□ 0.31
COLCA1-204ENST00000540738 TRIM22Q8IYM9 498 aa17■□□□□ 0.31
COLCA1-204ENST00000540738 BICD2Q8TD16 824 aa17■□□□□ 0.31
COLCA1-204ENST00000540738 AIDAQ96BJ3 306 aa17■□□□□ 0.31
COLCA1-204ENST00000540738 GPTP24298 496 aa17■□□□□ 0.31
COLCA1-204ENST00000540738 NOC3LQ8WTT2 800 aaKnown RBP17■□□□□ 0.31
COLCA1-204ENST00000540738 SETDB2Q96T68 719 aa17■□□□□ 0.31
COLCA1-204ENST00000540738 BTG4Q9NY30 223 aa17■□□□□ 0.31
COLCA1-204ENST00000540738 EIF2AK4Q9P2K8 1649 aaKnown RBP17■□□□□ 0.31
COLCA1-204ENST00000540738 NPATQ14207 1427 aa17■□□□□ 0.31
COLCA1-204ENST00000540738 HSP90AB2PQ58FF8 381 aa17■□□□□ 0.31
COLCA1-204ENST00000540738 MCM2P49736 904 aa17■□□□□ 0.31
COLCA1-204ENST00000540738 CRACR2BQ8N4Y2 399 aaPredicted RBP17■□□□□ 0.31
COLCA1-204ENST00000540738 MAPKBP1O60336 1514 aa17■□□□□ 0.31
COLCA1-204ENST00000540738 SLFN5Q08AF3 891 aa16.99■□□□□ 0.31
COLCA1-204ENST00000540738 SKOR2Q2VWA4 1001 aaPredicted RBP16.99■□□□□ 0.31
COLCA1-204ENST00000540738 SOGA3Q5TF21 947 aa16.99■□□□□ 0.31
COLCA1-204ENST00000540738 TMEM2Q9UHN6 1383 aa16.99■□□□□ 0.31
COLCA1-204ENST00000540738 AMER1Q5JTC6 1135 aaPredicted RBP16.99■□□□□ 0.31
COLCA1-204ENST00000540738 C22orf23Q9BZE7 217 aa16.99■□□□□ 0.31
COLCA1-204ENST00000540738 TFCP2L1Q9NZI6 479 aa16.99■□□□□ 0.31
COLCA1-204ENST00000540738 GLIPR1L2Q4G1C9 344 aa16.99■□□□□ 0.31
COLCA1-204ENST00000540738 ABCC1P33527 1531 aa16.99■□□□□ 0.31
COLCA1-204ENST00000540738 MAGI2Q86UL8 1455 aa16.99■□□□□ 0.31
COLCA1-204ENST00000540738 CCDC73Q6ZRK6 1079 aa16.98■□□□□ 0.31
COLCA1-204ENST00000540738 UBAC1Q9BSL1 405 aa16.98■□□□□ 0.31
COLCA1-204ENST00000540738 ZNF219Q9P2Y4 722 aaPredicted RBP16.98■□□□□ 0.31
COLCA1-204ENST00000540738 PTPRCP08575 1304 aa16.98■□□□□ 0.31
COLCA1-204ENST00000540738 CCDC69A6NI79 296 aa16.98■□□□□ 0.31
COLCA1-204ENST00000540738 PDCP20941 246 aa16.98■□□□□ 0.31
COLCA1-204ENST00000540738 NUCB2P80303 420 aa16.98■□□□□ 0.31
COLCA1-204ENST00000540738 TTLL12Q14166 644 aaPredicted RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms