RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 SIGLEC1Q9BZZ2 1709 aa13.3□□□□□ -0.28
CLIP1-213ENST00000540338 CPSF1Q10570 1443 aaKnown RBP13.3□□□□□ -0.28
CLIP1-213ENST00000540338 CHL1O00533 1208 aa13.3□□□□□ -0.28
CLIP1-213ENST00000540338 TBC1D32Q96NH3 1257 aa13.3□□□□□ -0.28
CLIP1-213ENST00000540338 REC8O95072 547 aa13.29□□□□□ -0.28
CLIP1-213ENST00000540338 IQSEC2Q5JU85 1478 aa13.29□□□□□ -0.28
CLIP1-213ENST00000540338 HTATSF1O43719 755 aaKnown RBP13.29□□□□□ -0.28
CLIP1-213ENST00000540338 KRT24Q2M2I5 525 aa13.29□□□□□ -0.28
CLIP1-213ENST00000540338 ANP32BQ92688 251 aaKnown RBP13.29□□□□□ -0.28
CLIP1-213ENST00000540338 SEC24BO95487 1268 aa13.29□□□□□ -0.28
CLIP1-213ENST00000540338 NLRP2Q9NX02 1062 aa13.29□□□□□ -0.28
CLIP1-213ENST00000540338 USP6P35125 1406 aa13.28□□□□□ -0.28
CLIP1-213ENST00000540338 USP32Q8NFA0 1604 aa13.28□□□□□ -0.28
CLIP1-213ENST00000540338 FRAT2O75474 233 aaPredicted RBP13.28□□□□□ -0.28
CLIP1-213ENST00000540338 BMP2KLQ5H9B9 411 aa13.28□□□□□ -0.28
CLIP1-213ENST00000540338 RILPL2Q969X0 211 aa13.28□□□□□ -0.28
CLIP1-213ENST00000540338 F6X3S4 739 aa13.28□□□□□ -0.28
CLIP1-213ENST00000540338 FOXD4L1Q9NU39 408 aa13.28□□□□□ -0.28
CLIP1-213ENST00000540338 ST18O60284 1047 aa13.27□□□□□ -0.28
CLIP1-213ENST00000540338 HOXC9P31274 260 aa13.27□□□□□ -0.28
CLIP1-213ENST00000540338 BRPF1P55201 1214 aaPredicted RBP13.27□□□□□ -0.28
CLIP1-213ENST00000540338 C9orf78Q9NZ63 289 aaPredicted RBP13.27□□□□□ -0.28
CLIP1-213ENST00000540338 ZNF853P0CG23 659 aa13.27□□□□□ -0.29
CLIP1-213ENST00000540338 REREQ9P2R6 1566 aa13.27□□□□□ -0.29
CLIP1-213ENST00000540338 KIAA1211Q6ZU35 1233 aa13.26□□□□□ -0.29
CLIP1-213ENST00000540338 DDX58O95786 925 aaKnown RBP13.26□□□□□ -0.29
CLIP1-213ENST00000540338 CD163L1Q9NR16 1453 aa13.26□□□□□ -0.29
CLIP1-213ENST00000540338 FLIIQ13045 1269 aa13.25□□□□□ -0.29
CLIP1-213ENST00000540338 L1TD1Q5T7N2 865 aaKnown RBP13.25□□□□□ -0.29
CLIP1-213ENST00000540338 NCLP19338 710 aaKnown RBP13.25□□□□□ -0.29
CLIP1-213ENST00000540338 SRCIN1Q9C0H9 1055 aa13.25□□□□□ -0.29
CLIP1-213ENST00000540338 ARHGEF10O15013 1369 aa13.25□□□□□ -0.29
CLIP1-213ENST00000540338 PIK3R4Q99570 1358 aa13.25□□□□□ -0.29
CLIP1-213ENST00000540338 AMOTQ4VCS5 1084 aa13.25□□□□□ -0.29
CLIP1-213ENST00000540338 GPATCH3Q96I76 525 aa13.25□□□□□ -0.29
CLIP1-213ENST00000540338 BTBD11A6QL63 1104 aa13.25□□□□□ -0.29
CLIP1-213ENST00000540338 PTMSP20962 102 aa13.25□□□□□ -0.29
CLIP1-213ENST00000540338 ANKRD44Q8N8A2 993 aa13.25□□□□□ -0.29
CLIP1-213ENST00000540338 TBC1D2Q9BYX2 928 aa13.25□□□□□ -0.29
CLIP1-213ENST00000540338 HSP90AB4PQ58FF6 505 aa13.24□□□□□ -0.29
CLIP1-213ENST00000540338 GZF1Q9H116 711 aaPredicted RBP13.24□□□□□ -0.29
CLIP1-213ENST00000540338 TTC5Q8N0Z6 440 aa13.24□□□□□ -0.29
CLIP1-213ENST00000540338 MEIS3Q99687 375 aa13.24□□□□□ -0.29
CLIP1-213ENST00000540338 LRRCC1Q9C099 1032 aa13.24□□□□□ -0.29
CLIP1-213ENST00000540338 TECPR2O15040 1411 aa13.24□□□□□ -0.29
CLIP1-213ENST00000540338 SURF6O75683 361 aaKnown RBP13.23□□□□□ -0.29
CLIP1-213ENST00000540338 KCNJ4P48050 445 aa13.23□□□□□ -0.29
CLIP1-213ENST00000540338 DDX11L8A8MPP1 907 aa13.23□□□□□ -0.29
CLIP1-213ENST00000540338 ZC3H6P61129 1189 aaKnown RBP13.23□□□□□ -0.29
CLIP1-213ENST00000540338 NEXNQ0ZGT2 675 aa13.23□□□□□ -0.29
CLIP1-213ENST00000540338 KRT28Q7Z3Y7 464 aa13.23□□□□□ -0.29
CLIP1-213ENST00000540338 IP6K1Q92551 441 aa13.23□□□□□ -0.29
CLIP1-213ENST00000540338 ABCC4O15439 1325 aa13.23□□□□□ -0.29
CLIP1-213ENST00000540338 KIAA0232Q92628 1395 aa13.23□□□□□ -0.29
CLIP1-213ENST00000540338 ADAMTS13Q76LX8 1427 aa13.23□□□□□ -0.29
CLIP1-213ENST00000540338 DCTPP1Q9H773 170 aa13.23□□□□□ -0.29
CLIP1-213ENST00000540338 LRRC7Q96NW7 1537 aa13.22□□□□□ -0.29
CLIP1-213ENST00000540338 SMARCA5O60264 1052 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-213ENST00000540338 TATP17735 454 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-213ENST00000540338 EXOC6BQ9Y2D4 811 aa13.22□□□□□ -0.29
CLIP1-213ENST00000540338 MPRIPQ6WCQ1 1025 aa13.21□□□□□ -0.29
CLIP1-213ENST00000540338 TBC1D9Q6ZT07 1266 aa13.21□□□□□ -0.3
CLIP1-213ENST00000540338 MAP3K5Q99683 1374 aa13.21□□□□□ -0.3
CLIP1-213ENST00000540338 AIMP1Q12904 312 aaKnown RBP13.21□□□□□ -0.3
CLIP1-213ENST00000540338 RABEP1Q15276 862 aa13.21□□□□□ -0.3
CLIP1-213ENST00000540338 CDC42BPGQ6DT37 1551 aa13.2□□□□□ -0.3
CLIP1-213ENST00000540338 MYO5BQ9ULV0 1848 aa13.2□□□□□ -0.3
CLIP1-213ENST00000540338 COL3A1P02461 1466 aaPredicted RBP13.2□□□□□ -0.3
CLIP1-213ENST00000540338 A0A0G2JS52 829 aa13.2□□□□□ -0.3
CLIP1-213ENST00000540338 ANO2Q9NQ90 1003 aa13.2□□□□□ -0.3
CLIP1-213ENST00000540338 CEP85Q6P2H3 762 aa13.2□□□□□ -0.3
CLIP1-213ENST00000540338 RIC3Q7Z5B4 369 aa13.19□□□□□ -0.3
CLIP1-213ENST00000540338 KIF24Q5T7B8 1368 aa13.19□□□□□ -0.3
CLIP1-213ENST00000540338 ANKRD24Q8TF21 1146 aa13.19□□□□□ -0.3
CLIP1-213ENST00000540338 SPG7Q9UQ90 795 aa13.19□□□□□ -0.3
CLIP1-213ENST00000540338 CPS1P31327 1500 aa13.19□□□□□ -0.3
CLIP1-213ENST00000540338 ERC2O15083 957 aa13.19□□□□□ -0.3
CLIP1-213ENST00000540338 GCP02774 474 aa13.19□□□□□ -0.3
CLIP1-213ENST00000540338 BABAM1Q9NWV8 329 aa13.19□□□□□ -0.3
CLIP1-213ENST00000540338 SOS1Q07889 1333 aaPredicted RBP13.19□□□□□ -0.3
CLIP1-213ENST00000540338 G2E3Q7L622 706 aa13.19□□□□□ -0.3
CLIP1-213ENST00000540338 IGSF1Q8N6C5 1336 aa13.18□□□□□ -0.3
CLIP1-213ENST00000540338 TTC22Q5TAA0 569 aa13.18□□□□□ -0.3
CLIP1-213ENST00000540338 GOLGA6L3A6NEY3 463 aa13.18□□□□□ -0.3
CLIP1-213ENST00000540338 SRGAP3O43295 1099 aa13.18□□□□□ -0.3
CLIP1-213ENST00000540338 IFIT2P09913 472 aaKnown RBP13.18□□□□□ -0.3
CLIP1-213ENST00000540338 LRRFIP2Q9Y608 721 aaKnown RBP13.18□□□□□ -0.3
CLIP1-213ENST00000540338 K7ELQ4 463 aaPredicted RBP13.17□□□□□ -0.3
CLIP1-213ENST00000540338 G3BP1Q13283 466 aaKnown RBP eCLIP13.17□□□□□ -0.3
CLIP1-213ENST00000540338 AKAP4Q5JQC9 854 aa13.17□□□□□ -0.3
CLIP1-213ENST00000540338 LRRC59Q96AG4 307 aaKnown RBP13.17□□□□□ -0.3
CLIP1-213ENST00000540338 CLASRPQ8N2M8 674 aaKnown RBP13.17□□□□□ -0.3
CLIP1-213ENST00000540338 ORAI2Q96SN7 254 aa13.17□□□□□ -0.3
CLIP1-213ENST00000540338 C19orf44Q9H6X5 657 aa13.17□□□□□ -0.3
CLIP1-213ENST00000540338 DNAAF4Q8WXU2 420 aa13.16□□□□□ -0.3
CLIP1-213ENST00000540338 DBF4Q9UBU7 674 aaPredicted RBP13.16□□□□□ -0.3
CLIP1-213ENST00000540338 ANKARQ7Z5J8 1434 aa13.16□□□□□ -0.3
CLIP1-213ENST00000540338 EVA1CP58658 441 aa13.16□□□□□ -0.3
CLIP1-213ENST00000540338 NOL8Q76FK4 1167 aaKnown RBP13.16□□□□□ -0.3
CLIP1-213ENST00000540338 PLEKHM2Q8IWE5 1019 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms