RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 MVPQ14764 893 aaKnown RBP12.32□□□□□ -0.44
CLIP1-212ENST00000540304 ATF7IPQ6VMQ6 1270 aa12.32□□□□□ -0.44
CLIP1-212ENST00000540304 DHX37Q8IY37 1157 aaKnown RBP12.32□□□□□ -0.44
CLIP1-212ENST00000540304 SLIT3O75094 1523 aa12.32□□□□□ -0.44
CLIP1-212ENST00000540304 IPO8O15397 1037 aaKnown RBP12.31□□□□□ -0.44
CLIP1-212ENST00000540304 FOXO3O43524 673 aa12.31□□□□□ -0.44
CLIP1-212ENST00000540304 TRIM27P14373 513 aa12.31□□□□□ -0.44
CLIP1-212ENST00000540304 BRPF1P55201 1214 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-212ENST00000540304 NBR1Q14596 966 aa12.31□□□□□ -0.44
CLIP1-212ENST00000540304 TMEM94Q12767 1356 aa12.31□□□□□ -0.44
CLIP1-212ENST00000540304 VAMP4O75379 141 aa12.31□□□□□ -0.44
CLIP1-212ENST00000540304 NOB1Q9ULX3 412 aaKnown RBP12.31□□□□□ -0.44
CLIP1-212ENST00000540304 MTHFSDQ2M296 383 aaKnown RBP12.3□□□□□ -0.44
CLIP1-212ENST00000540304 GAS2L2Q8NHY3 880 aa12.3□□□□□ -0.44
CLIP1-212ENST00000540304 IP6K1Q92551 441 aa12.3□□□□□ -0.44
CLIP1-212ENST00000540304 MST1RQ04912 1400 aa12.3□□□□□ -0.44
CLIP1-212ENST00000540304 ATF3P18847 181 aa12.29□□□□□ -0.44
CLIP1-212ENST00000540304 HSPA2P54652 639 aa12.29□□□□□ -0.44
CLIP1-212ENST00000540304 TWISTNBQ3B726 338 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-212ENST00000540304 TSPYL6Q8N831 410 aa12.29□□□□□ -0.44
CLIP1-212ENST00000540304 MCM10Q7L590 875 aa12.29□□□□□ -0.44
CLIP1-212ENST00000540304 CRB1P82279 1406 aa12.29□□□□□ -0.44
CLIP1-212ENST00000540304 IGHDP01880 384 aa12.28□□□□□ -0.44
CLIP1-212ENST00000540304 XPCQ01831 940 aaPredicted RBP12.28□□□□□ -0.44
CLIP1-212ENST00000540304 ALS2Q96Q42 1657 aa12.28□□□□□ -0.44
CLIP1-212ENST00000540304 LRRC37A3O60309 1634 aa12.28□□□□□ -0.44
CLIP1-212ENST00000540304 CHL1O00533 1208 aa12.28□□□□□ -0.44
CLIP1-212ENST00000540304 KRT28Q7Z3Y7 464 aa12.28□□□□□ -0.44
CLIP1-212ENST00000540304 C8orf58Q8NAV2 365 aa12.28□□□□□ -0.44
CLIP1-212ENST00000540304 RTF1Q92541 710 aaKnown RBP12.28□□□□□ -0.44
CLIP1-212ENST00000540304 LTV1Q96GA3 475 aaPredicted RBP12.28□□□□□ -0.44
CLIP1-212ENST00000540304 DDX19BQ9UMR2 479 aa12.28□□□□□ -0.44
CLIP1-212ENST00000540304 LMTK3Q96Q04 1460 aa12.28□□□□□ -0.44
CLIP1-212ENST00000540304 MRPL50Q8N5N7 158 aaKnown RBP12.27□□□□□ -0.44
CLIP1-212ENST00000540304 USP19O94966 1318 aa12.27□□□□□ -0.44
CLIP1-212ENST00000540304 STRCQ7RTU9 1775 aa12.27□□□□□ -0.45
CLIP1-212ENST00000540304 HTATSF1O43719 755 aaKnown RBP12.27□□□□□ -0.45
CLIP1-212ENST00000540304 KIAA0232Q92628 1395 aa12.27□□□□□ -0.45
CLIP1-212ENST00000540304 ELL2O00472 640 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-212ENST00000540304 GCP02774 474 aa12.26□□□□□ -0.45
CLIP1-212ENST00000540304 HAP1P54257 671 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-212ENST00000540304 ITPRIPQ8IWB1 547 aa12.26□□□□□ -0.45
CLIP1-212ENST00000540304 ARHGAP45Q92619 1136 aa12.26□□□□□ -0.45
CLIP1-212ENST00000540304 PCDHB15Q9Y5E8 787 aa12.26□□□□□ -0.45
CLIP1-212ENST00000540304 XIRP1Q702N8 1843 aaKnown RBP12.26□□□□□ -0.45
CLIP1-212ENST00000540304 KDM4FA0A1W2PPD8 638 aa12.25□□□□□ -0.45
CLIP1-212ENST00000540304 PDE4AP27815 886 aa12.25□□□□□ -0.45
CLIP1-212ENST00000540304 CADPS2Q86UW7 1296 aa12.25□□□□□ -0.45
CLIP1-212ENST00000540304 TMEM57Q8N5G2 664 aa12.25□□□□□ -0.45
CLIP1-212ENST00000540304 RGPD2P0DJD1 1756 aa12.25□□□□□ -0.45
CLIP1-212ENST00000540304 LMOD2Q6P5Q4 547 aa12.25□□□□□ -0.45
CLIP1-212ENST00000540304 ARHGEF25Q86VW2 580 aa12.25□□□□□ -0.45
CLIP1-212ENST00000540304 MSH6P52701 1360 aa12.25□□□□□ -0.45
CLIP1-212ENST00000540304 GNAT3A8MTJ3 354 aa12.25□□□□□ -0.45
CLIP1-212ENST00000540304 CHMP4AQ9BY43 222 aa12.25□□□□□ -0.45
CLIP1-212ENST00000540304 BACH2Q9BYV9 841 aa12.25□□□□□ -0.45
CLIP1-212ENST00000540304 RWDD1Q9H446 243 aaPredicted RBP12.25□□□□□ -0.45
CLIP1-212ENST00000540304 MAP3K5Q99683 1374 aa12.24□□□□□ -0.45
CLIP1-212ENST00000540304 ZBTB7CA1YPR0 619 aa12.24□□□□□ -0.45
CLIP1-212ENST00000540304 TULP1O00294 542 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-212ENST00000540304 CAMTA1Q9Y6Y1 1673 aa12.23□□□□□ -0.45
CLIP1-212ENST00000540304 RGS3P49796 1198 aa12.23□□□□□ -0.45
CLIP1-212ENST00000540304 NBPF6Q5VWK0 638 aa12.23□□□□□ -0.45
CLIP1-212ENST00000540304 USHBP1Q8N6Y0 703 aa12.23□□□□□ -0.45
CLIP1-212ENST00000540304 NBPF4Q96M43 638 aa12.23□□□□□ -0.45
CLIP1-212ENST00000540304 MED1Q15648 1581 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-212ENST00000540304 NPM2Q86SE8 214 aaKnown RBP12.23□□□□□ -0.45
CLIP1-212ENST00000540304 TSPYL4Q9UJ04 414 aa12.23□□□□□ -0.45
CLIP1-212ENST00000540304 ABCC4O15439 1325 aa12.22□□□□□ -0.45
CLIP1-212ENST00000540304 NPHP3Q7Z494 1330 aa12.22□□□□□ -0.45
CLIP1-212ENST00000540304 ZBTB40Q9NUA8 1239 aa12.22□□□□□ -0.45
CLIP1-212ENST00000540304 NCAPD2Q15021 1401 aa12.22□□□□□ -0.45
CLIP1-212ENST00000540304 KRT24Q2M2I5 525 aa12.22□□□□□ -0.45
CLIP1-212ENST00000540304 API5Q9BZZ5 524 aaKnown RBP12.22□□□□□ -0.45
CLIP1-212ENST00000540304 CHMP4BQ9H444 224 aaKnown RBP12.22□□□□□ -0.45
CLIP1-212ENST00000540304 RGPD5Q99666 1765 aa12.21□□□□□ -0.46
CLIP1-212ENST00000540304 HDAC1Q13547 482 aaPredicted RBP12.21□□□□□ -0.46
CLIP1-212ENST00000540304 LMO7Q8WWI1 1683 aa12.2□□□□□ -0.46
CLIP1-212ENST00000540304 TNS3Q68CZ2 1445 aa12.2□□□□□ -0.46
CLIP1-212ENST00000540304 MIS18AQ9NYP9 233 aa12.2□□□□□ -0.46
CLIP1-212ENST00000540304 PXDNQ92626 1479 aa12.2□□□□□ -0.46
CLIP1-212ENST00000540304 ANKRD24Q8TF21 1146 aa12.2□□□□□ -0.46
CLIP1-212ENST00000540304 LRRC59Q96AG4 307 aaKnown RBP12.2□□□□□ -0.46
CLIP1-212ENST00000540304 BABAM1Q9NWV8 329 aa12.2□□□□□ -0.46
CLIP1-212ENST00000540304 ANP32AP39687 249 aaKnown RBP12.19□□□□□ -0.46
CLIP1-212ENST00000540304 IL17REQ8NFR9 667 aa12.19□□□□□ -0.46
CLIP1-212ENST00000540304 CRYBG1Q9Y4K1 1723 aa12.19□□□□□ -0.46
CLIP1-212ENST00000540304 VIRMAQ69YN4 1812 aaKnown RBP12.19□□□□□ -0.46
CLIP1-212ENST00000540304 FAM161AQ3B820 660 aa12.19□□□□□ -0.46
CLIP1-212ENST00000540304 DDX17Q92841 729 aaKnown RBP12.19□□□□□ -0.46
CLIP1-212ENST00000540304 ZBTB7BO15156 539 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-212ENST00000540304 CEMIPQ8WUJ3 1361 aa12.18□□□□□ -0.46
CLIP1-212ENST00000540304 ABCC6O95255 1503 aa12.18□□□□□ -0.46
CLIP1-212ENST00000540304 FAM208AQ9UK61 1670 aaKnown RBP12.17□□□□□ -0.46
CLIP1-212ENST00000540304 PTPRCP08575 1304 aa12.17□□□□□ -0.46
CLIP1-212ENST00000540304 TAF7Q15545 349 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-212ENST00000540304 AMOTQ4VCS5 1084 aa12.17□□□□□ -0.46
CLIP1-212ENST00000540304 PDZRN3Q9UPQ7 1066 aa12.17□□□□□ -0.46
CLIP1-212ENST00000540304 AXIN2Q9Y2T1 843 aa12.17□□□□□ -0.46
CLIP1-212ENST00000540304 SOS1Q07889 1333 aaPredicted RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms