RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 NUTM2EB1AL46 878 aaPredicted RBP21.81■■□□□ 1.08
COPS3-212ENST00000539941 PLEKHG5O94827 1062 aa21.81■■□□□ 1.08
COPS3-212ENST00000539941 RARSP54136 660 aaKnown RBP21.81■■□□□ 1.08
COPS3-212ENST00000539941 NUTM2AQ8IVF1 878 aaPredicted RBP21.81■■□□□ 1.08
COPS3-212ENST00000539941 RGPD2P0DJD1 1756 aa21.81■■□□□ 1.08
COPS3-212ENST00000539941 RGPD5Q99666 1765 aa21.8■■□□□ 1.08
COPS3-212ENST00000539941 ERBB3P21860 1342 aa21.8■■□□□ 1.08
COPS3-212ENST00000539941 LMO7Q8WWI1 1683 aa21.8■■□□□ 1.08
COPS3-212ENST00000539941 FAM208AQ9UK61 1670 aaKnown RBP21.8■■□□□ 1.08
COPS3-212ENST00000539941 EXOSC9Q06265 439 aaKnown RBP21.79■■□□□ 1.08
COPS3-212ENST00000539941 THUMPD2Q9BTF0 503 aaKnown RBP21.79■■□□□ 1.08
COPS3-212ENST00000539941 AXIN2Q9Y2T1 843 aa21.79■■□□□ 1.08
COPS3-212ENST00000539941 PLIN1O60240 522 aa21.79■■□□□ 1.08
COPS3-212ENST00000539941 CABLES1Q8TDN4 633 aa21.79■■□□□ 1.08
COPS3-212ENST00000539941 RTF1Q92541 710 aaKnown RBP21.79■■□□□ 1.08
COPS3-212ENST00000539941 ZNF428Q96B54 188 aa21.79■■□□□ 1.08
COPS3-212ENST00000539941 ABCA3Q99758 1704 aa21.78■■□□□ 1.08
COPS3-212ENST00000539941 FAM83GA6ND36 823 aa21.78■■□□□ 1.08
COPS3-212ENST00000539941 MEX3CQ5U5Q3 659 aaKnown RBP21.78■■□□□ 1.08
COPS3-212ENST00000539941 BCAR3O75815 825 aa21.77■■□□□ 1.08
COPS3-212ENST00000539941 USHBP1Q8N6Y0 703 aa21.77■■□□□ 1.08
COPS3-212ENST00000539941 KIAA0232Q92628 1395 aa21.77■■□□□ 1.08
COPS3-212ENST00000539941 PLEKHG2Q9H7P9 1386 aa21.76■■□□□ 1.07
COPS3-212ENST00000539941 MBIPQ9NS73 344 aa21.75■■□□□ 1.07
COPS3-212ENST00000539941 LAS1LQ9Y4W2 734 aaKnown RBP21.75■■□□□ 1.07
COPS3-212ENST00000539941 MAP3K5Q99683 1374 aa21.75■■□□□ 1.07
COPS3-212ENST00000539941 LRRC37A3O60309 1634 aa21.75■■□□□ 1.07
COPS3-212ENST00000539941 GNAT3A8MTJ3 354 aa21.75■■□□□ 1.07
COPS3-212ENST00000539941 DCTN1Q14203 1278 aa21.75■■□□□ 1.07
COPS3-212ENST00000539941 CRB1P82279 1406 aa21.75■■□□□ 1.07
COPS3-212ENST00000539941 AMOTQ4VCS5 1084 aa21.74■■□□□ 1.07
COPS3-212ENST00000539941 CHL1O00533 1208 aa21.73■■□□□ 1.07
COPS3-212ENST00000539941 PDE3AQ14432 1141 aa21.73■■□□□ 1.07
COPS3-212ENST00000539941 MCM10Q7L590 875 aa21.73■■□□□ 1.07
COPS3-212ENST00000539941 EXOC6Q8TAG9 804 aa21.73■■□□□ 1.07
COPS3-212ENST00000539941 RBM19Q9Y4C8 960 aaKnown RBP21.73■■□□□ 1.07
COPS3-212ENST00000539941 ALDH1L2Q3SY69 923 aa21.72■■□□□ 1.07
COPS3-212ENST00000539941 PLEKHO1Q53GL0 409 aaPredicted RBP21.72■■□□□ 1.07
COPS3-212ENST00000539941 ZNF772Q68DY9 489 aaPredicted RBP21.72■■□□□ 1.07
COPS3-212ENST00000539941 CANXP27824 592 aaKnown RBP21.7■■□□□ 1.06
COPS3-212ENST00000539941 HAP1P54257 671 aaPredicted RBP21.7■■□□□ 1.06
COPS3-212ENST00000539941 CRBNQ96SW2 442 aa21.7■■□□□ 1.06
COPS3-212ENST00000539941 PRDM11Q9NQV5 511 aa21.7■■□□□ 1.06
COPS3-212ENST00000539941 CHRNA2Q15822 529 aa21.69■■□□□ 1.06
COPS3-212ENST00000539941 C20orf194Q5TEA3 1177 aa21.69■■□□□ 1.06
COPS3-212ENST00000539941 BABAM1Q9NWV8 329 aa21.69■■□□□ 1.06
COPS3-212ENST00000539941 BRPF1P55201 1214 aaPredicted RBP21.69■■□□□ 1.06
COPS3-212ENST00000539941 COL22A1Q8NFW1 1626 aaPredicted RBP21.69■■□□□ 1.06
COPS3-212ENST00000539941 AFF2P51816 1311 aa21.68■■□□□ 1.06
COPS3-212ENST00000539941 CCDC136Q96JN2 1154 aa21.68■■□□□ 1.06
COPS3-212ENST00000539941 SMC4Q9NTJ3 1288 aa21.68■■□□□ 1.06
COPS3-212ENST00000539941 NLRP2Q9NX02 1062 aa21.68■■□□□ 1.06
COPS3-212ENST00000539941 VAMP4O75379 141 aa21.67■■□□□ 1.06
COPS3-212ENST00000539941 CSB-PGBD3P0DP91 1061 aa21.67■■□□□ 1.06
COPS3-212ENST00000539941 MS4A1P11836 297 aa21.67■■□□□ 1.06
COPS3-212ENST00000539941 B4GALNT3Q6L9W6 998 aa21.67■■□□□ 1.06
COPS3-212ENST00000539941 SSH1Q8WYL5 1049 aa21.67■■□□□ 1.06
COPS3-212ENST00000539941 ADAMTS2O95450 1211 aa21.66■■□□□ 1.06
COPS3-212ENST00000539941 AKAP4Q5JQC9 854 aa21.66■■□□□ 1.06
COPS3-212ENST00000539941 C8orf37Q96NL8 207 aa21.66■■□□□ 1.06
COPS3-212ENST00000539941 CEMIPQ8WUJ3 1361 aa21.66■■□□□ 1.06
COPS3-212ENST00000539941 KIF16BQ96L93 1317 aa21.66■■□□□ 1.06
COPS3-212ENST00000539941 OVOS2A0A0G2JMS6 1433 aa21.66■■□□□ 1.06
COPS3-212ENST00000539941 RAPGEF4Q8WZA2 1011 aa21.66■■□□□ 1.06
COPS3-212ENST00000539941 TWISTNBQ3B726 338 aaPredicted RBP21.65■■□□□ 1.06
COPS3-212ENST00000539941 ZKSCAN2Q63HK3 967 aa21.65■■□□□ 1.06
COPS3-212ENST00000539941 ZNF530Q6P9A1 599 aaPredicted RBP21.65■■□□□ 1.06
COPS3-212ENST00000539941 IL17REQ8NFR9 667 aa21.65■■□□□ 1.06
COPS3-212ENST00000539941 FRAT1Q92837 279 aaPredicted RBP21.65■■□□□ 1.06
COPS3-212ENST00000539941 BCL2L13Q9BXK5 485 aa21.65■■□□□ 1.06
COPS3-212ENST00000539941 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.65■■□□□ 1.06
COPS3-212ENST00000539941 COL5A2P05997 1499 aaPredicted RBP21.64■■□□□ 1.05
COPS3-212ENST00000539941 WDR17Q8IZU2 1322 aa21.64■■□□□ 1.05
COPS3-212ENST00000539941 TATP17735 454 aaPredicted RBP21.63■■□□□ 1.05
COPS3-212ENST00000539941 C1orf141Q5JVX7 400 aa21.63■■□□□ 1.05
COPS3-212ENST00000539941 TSPYL6Q8N831 410 aa21.63■■□□□ 1.05
COPS3-212ENST00000539941 C8orf58Q8NAV2 365 aa21.63■■□□□ 1.05
COPS3-212ENST00000539941 NGLY1Q96IV0 654 aa21.63■■□□□ 1.05
COPS3-212ENST00000539941 TSPYL4Q9UJ04 414 aa21.63■■□□□ 1.05
COPS3-212ENST00000539941 IPO8O15397 1037 aaKnown RBP21.62■■□□□ 1.05
COPS3-212ENST00000539941 AAMPQ13685 434 aa21.62■■□□□ 1.05
COPS3-212ENST00000539941 TAF7Q15545 349 aaPredicted RBP21.62■■□□□ 1.05
COPS3-212ENST00000539941 RXRBP28702 533 aa21.61■■□□□ 1.05
COPS3-212ENST00000539941 QTRT2Q9H974 415 aaKnown RBP21.61■■□□□ 1.05
COPS3-212ENST00000539941 SOS1Q07889 1333 aaPredicted RBP21.61■■□□□ 1.05
COPS3-212ENST00000539941 ADAMTS7Q9UKP4 1686 aa21.6■■□□□ 1.05
COPS3-212ENST00000539941 FNBP4Q8N3X1 1017 aaPredicted RBP21.6■■□□□ 1.05
COPS3-212ENST00000539941 SPG7Q9UQ90 795 aa21.6■■□□□ 1.05
COPS3-212ENST00000539941 PKD1L3Q7Z443 1732 aa21.59■■□□□ 1.05
COPS3-212ENST00000539941 MEGF6O75095 1541 aa21.59■■□□□ 1.05
COPS3-212ENST00000539941 COL14A1Q05707 1796 aaKnown RBP21.59■■□□□ 1.05
COPS3-212ENST00000539941 ATF7IPQ6VMQ6 1270 aa21.58■■□□□ 1.05
COPS3-212ENST00000539941 MRPL50Q8N5N7 158 aaKnown RBP21.58■■□□□ 1.05
COPS3-212ENST00000539941 PANK1Q8TE04 598 aa21.58■■□□□ 1.05
COPS3-212ENST00000539941 ARHGAP45Q92619 1136 aa21.58■■□□□ 1.05
COPS3-212ENST00000539941 VIRMAQ69YN4 1812 aaKnown RBP21.57■■□□□ 1.04
COPS3-212ENST00000539941 DZIP1LQ8IYY4 767 aaKnown RBP21.57■■□□□ 1.04
COPS3-212ENST00000539941 NOB1Q9ULX3 412 aaKnown RBP21.57■■□□□ 1.04
COPS3-212ENST00000539941 PARP4Q9UKK3 1724 aaKnown RBP21.57■■□□□ 1.04
COPS3-212ENST00000539941 ELL2O00472 640 aaPredicted RBP21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms