RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 IL13P35225 146 aa25.09■■□□□ 1.61
TMEM260-203ENST00000539559 THEMISQ8N1K5 641 aaPredicted RBP25.09■■□□□ 1.61
TMEM260-203ENST00000539559 NCKAP5LQ9HCH0 1330 aa25.08■■□□□ 1.61
TMEM260-203ENST00000539559 CAVIN1Q6NZI2 390 aaKnown RBP25.08■■□□□ 1.61
TMEM260-203ENST00000539559 ATP7BP35670 1465 aa25.08■■□□□ 1.61
TMEM260-203ENST00000539559 CHMP4BQ9H444 224 aaKnown RBP25.08■■□□□ 1.6
TMEM260-203ENST00000539559 MAP2P11137 1827 aaKnown RBP25.07■■□□□ 1.6
TMEM260-203ENST00000539559 SLIT1O75093 1534 aa25.07■■□□□ 1.6
TMEM260-203ENST00000539559 TTC22Q5TAA0 569 aa25.07■■□□□ 1.6
TMEM260-203ENST00000539559 KIF20BQ96Q89 1820 aa25.07■■□□□ 1.6
TMEM260-203ENST00000539559 ZGPATQ8N5A5 531 aaKnown RBP25.07■■□□□ 1.6
TMEM260-203ENST00000539559 ARHGAP23Q9P227 1491 aa25.06■■□□□ 1.6
TMEM260-203ENST00000539559 KLHL40Q2TBA0 621 aa25.06■■□□□ 1.6
TMEM260-203ENST00000539559 CFAP44Q96MT7 982 aa25.05■■□□□ 1.6
TMEM260-203ENST00000539559 USP26Q9BXU7 913 aa25.05■■□□□ 1.6
TMEM260-203ENST00000539559 CALD1Q05682 793 aaKnown RBP25.05■■□□□ 1.6
TMEM260-203ENST00000539559 FOXD4L5Q5VV16 416 aaPredicted RBP25.05■■□□□ 1.6
TMEM260-203ENST00000539559 FOXD4L4Q8WXT5 416 aaPredicted RBP25.05■■□□□ 1.6
TMEM260-203ENST00000539559 API5Q9BZZ5 524 aaKnown RBP25.05■■□□□ 1.6
TMEM260-203ENST00000539559 DCTPP1Q9H773 170 aa25.05■■□□□ 1.6
TMEM260-203ENST00000539559 ROBO2Q9HCK4 1378 aa25.04■■□□□ 1.6
TMEM260-203ENST00000539559 RABEP1Q15276 862 aa25.03■■□□□ 1.6
TMEM260-203ENST00000539559 SLC26A8Q96RN1 970 aa25.03■■□□□ 1.6
TMEM260-203ENST00000539559 NUDT16Q96DE0 195 aaKnown RBP25.03■■□□□ 1.6
TMEM260-203ENST00000539559 RBM27Q9P2N5 1060 aaKnown RBP25.03■■□□□ 1.6
TMEM260-203ENST00000539559 CDC42BPGQ6DT37 1551 aa25.03■■□□□ 1.6
TMEM260-203ENST00000539559 SDSP20132 328 aa25.02■■□□□ 1.6
TMEM260-203ENST00000539559 PTMSP20962 102 aa25.02■■□□□ 1.6
TMEM260-203ENST00000539559 CCDC173Q0VFZ6 552 aa25.02■■□□□ 1.6
TMEM260-203ENST00000539559 CCDC61Q9Y6R9 512 aa25.01■■□□□ 1.59
TMEM260-203ENST00000539559 AEBP1Q8IUX7 1158 aa25.01■■□□□ 1.59
TMEM260-203ENST00000539559 LMBRD1Q9NUN5 540 aa25■■□□□ 1.59
TMEM260-203ENST00000539559 TBX22Q9Y458 520 aa25■■□□□ 1.59
TMEM260-203ENST00000539559 PRPF40AO75400 957 aaKnown RBP24.99■■□□□ 1.59
TMEM260-203ENST00000539559 ZSCAN23Q3MJ62 389 aa24.99■■□□□ 1.59
TMEM260-203ENST00000539559 CLEC17AQ6ZS10 378 aa24.99■■□□□ 1.59
TMEM260-203ENST00000539559 PPP1R9BQ96SB3 815 aa24.99■■□□□ 1.59
TMEM260-203ENST00000539559 CPSF1Q10570 1443 aaKnown RBP24.99■■□□□ 1.59
TMEM260-203ENST00000539559 DLG5Q8TDM6 1919 aa24.98■■□□□ 1.59
TMEM260-203ENST00000539559 KIAA1211Q6ZU35 1233 aa24.98■■□□□ 1.59
TMEM260-203ENST00000539559 VSIG10Q8N0Z9 540 aa24.98■■□□□ 1.59
TMEM260-203ENST00000539559 MEIS3Q99687 375 aa24.98■■□□□ 1.59
TMEM260-203ENST00000539559 RBSNQ9H1K0 784 aa24.98■■□□□ 1.59
TMEM260-203ENST00000539559 INTS3Q68E01 1043 aaKnown RBP24.98■■□□□ 1.59
TMEM260-203ENST00000539559 MCM10Q7L590 875 aa24.98■■□□□ 1.59
TMEM260-203ENST00000539559 CEP85Q6P2H3 762 aa24.97■■□□□ 1.59
TMEM260-203ENST00000539559 ANP32BQ92688 251 aaKnown RBP24.97■■□□□ 1.59
TMEM260-203ENST00000539559 ANKRD44Q8N8A2 993 aa24.97■■□□□ 1.59
TMEM260-203ENST00000539559 CYP2E1P05181 493 aaPredicted RBP24.96■■□□□ 1.59
TMEM260-203ENST00000539559 EDC4Q6P2E9 1401 aaKnown RBP24.96■■□□□ 1.59
TMEM260-203ENST00000539559 RRP9O43818 475 aaKnown RBP24.96■■□□□ 1.59
TMEM260-203ENST00000539559 PRIM1P49642 420 aaKnown RBP24.96■■□□□ 1.59
TMEM260-203ENST00000539559 TSHZ3Q63HK5 1081 aa24.96■■□□□ 1.59
TMEM260-203ENST00000539559 ZSCAN30Q86W11 494 aa24.96■■□□□ 1.59
TMEM260-203ENST00000539559 ZDHHC9Q9Y397 364 aa24.96■■□□□ 1.59
TMEM260-203ENST00000539559 PTPRUQ92729 1446 aa24.95■■□□□ 1.59
TMEM260-203ENST00000539559 NUCB2P80303 420 aa24.95■■□□□ 1.58
TMEM260-203ENST00000539559 GPT2Q8TD30 523 aa24.95■■□□□ 1.58
TMEM260-203ENST00000539559 MSH6P52701 1360 aa24.95■■□□□ 1.58
TMEM260-203ENST00000539559 ATP10DQ9P241 1426 aa24.95■■□□□ 1.58
TMEM260-203ENST00000539559 AMOTL2Q9Y2J4 779 aa24.95■■□□□ 1.58
TMEM260-203ENST00000539559 MIS18AQ9NYP9 233 aa24.94■■□□□ 1.58
TMEM260-203ENST00000539559 NSFL1CQ9UNZ2 370 aaKnown RBP24.94■■□□□ 1.58
TMEM260-203ENST00000539559 DNAJC5Q9H3Z4 198 aa24.93■■□□□ 1.58
TMEM260-203ENST00000539559 ZNF445P59923 1031 aa24.92■■□□□ 1.58
TMEM260-203ENST00000539559 LMOD3Q0VAK6 560 aa24.92■■□□□ 1.58
TMEM260-203ENST00000539559 MSNP26038 577 aaKnown RBP24.92■■□□□ 1.58
TMEM260-203ENST00000539559 SULT6B1Q6IMI4 303 aa24.92■■□□□ 1.58
TMEM260-203ENST00000539559 NOL8Q76FK4 1167 aaKnown RBP24.92■■□□□ 1.58
TMEM260-203ENST00000539559 COG3Q96JB2 828 aa24.92■■□□□ 1.58
TMEM260-203ENST00000539559 RIMS1Q86UR5 1692 aaKnown RBP24.92■■□□□ 1.58
TMEM260-203ENST00000539559 PRR36Q9H6K5 1346 aa24.91■■□□□ 1.58
TMEM260-203ENST00000539559 DIP2AQ14689 1571 aa24.91■■□□□ 1.58
TMEM260-203ENST00000539559 CEP170BQ9Y4F5 1589 aaPredicted RBP24.91■■□□□ 1.58
TMEM260-203ENST00000539559 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.91■■□□□ 1.58
TMEM260-203ENST00000539559 RGS12O14924 1447 aa24.91■■□□□ 1.58
TMEM260-203ENST00000539559 ST18O60284 1047 aa24.9■■□□□ 1.58
TMEM260-203ENST00000539559 SLC4A10Q6U841 1118 aa24.9■■□□□ 1.58
TMEM260-203ENST00000539559 F6X3S4 739 aa24.89■■□□□ 1.58
TMEM260-203ENST00000539559 SOX12O15370 315 aa24.89■■□□□ 1.58
TMEM260-203ENST00000539559 GLIPR1L2Q4G1C9 344 aa24.89■■□□□ 1.58
TMEM260-203ENST00000539559 RTL1A6NKG5 1358 aa24.89■■□□□ 1.58
TMEM260-203ENST00000539559 IBTKQ9P2D0 1353 aaPredicted RBP24.89■■□□□ 1.58
TMEM260-203ENST00000539559 SYCE3A1L190 88 aa24.88■■□□□ 1.57
TMEM260-203ENST00000539559 FOXD4L6Q3SYB3 417 aaPredicted RBP24.88■■□□□ 1.57
TMEM260-203ENST00000539559 CASC1Q6TDU7 716 aa24.88■■□□□ 1.57
TMEM260-203ENST00000539559 FOXD4L3Q6VB84 417 aaPredicted RBP24.88■■□□□ 1.57
TMEM260-203ENST00000539559 RPAP2Q8IXW5 612 aaPredicted RBP24.88■■□□□ 1.57
TMEM260-203ENST00000539559 TMEM63CQ9P1W3 806 aa24.88■■□□□ 1.57
TMEM260-203ENST00000539559 CDK12Q9NYV4 1490 aaPredicted RBP24.87■■□□□ 1.57
TMEM260-203ENST00000539559 XPCQ01831 940 aaPredicted RBP24.87■■□□□ 1.57
TMEM260-203ENST00000539559 SLC4A2P04920 1241 aa24.86■■□□□ 1.57
TMEM260-203ENST00000539559 RBM10P98175 930 aaKnown RBP24.86■■□□□ 1.57
TMEM260-203ENST00000539559 G2E3Q7L622 706 aa24.86■■□□□ 1.57
TMEM260-203ENST00000539559 NEK4P51957 841 aa24.86■■□□□ 1.57
TMEM260-203ENST00000539559 RNF214Q8ND24 703 aa24.86■■□□□ 1.57
TMEM260-203ENST00000539559 NUTM2FA1L443 756 aa24.85■■□□□ 1.57
TMEM260-203ENST00000539559 MON2Q7Z3U7 1717 aa24.85■■□□□ 1.57
TMEM260-203ENST00000539559 EIF4A2Q14240 407 aaKnown RBP24.85■■□□□ 1.57
TMEM260-203ENST00000539559 EXOC6BQ9Y2D4 811 aa24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms