RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 ZNF853P0CG23 659 aa13.78□□□□□ -0.2
CLIP1-210ENST00000538120 PHF8Q9UPP1 1060 aa13.77□□□□□ -0.21
CLIP1-210ENST00000538120 SBNO1A3KN83 1393 aa13.77□□□□□ -0.21
CLIP1-210ENST00000538120 NLRP6P59044 892 aa13.76□□□□□ -0.21
CLIP1-210ENST00000538120 MARF1Q9Y4F3 1742 aaKnown RBP13.76□□□□□ -0.21
CLIP1-210ENST00000538120 CLUAP1Q96AJ1 413 aa13.76□□□□□ -0.21
CLIP1-210ENST00000538120 IGHDP01880 384 aa13.75□□□□□ -0.21
CLIP1-210ENST00000538120 MS4A1P11836 297 aa13.75□□□□□ -0.21
CLIP1-210ENST00000538120 SMC4Q9NTJ3 1288 aa13.75□□□□□ -0.21
CLIP1-210ENST00000538120 IFT57Q9NWB7 429 aa13.75□□□□□ -0.21
CLIP1-210ENST00000538120 FLT4P35916 1363 aa13.75□□□□□ -0.21
CLIP1-210ENST00000538120 FAM83GA6ND36 823 aa13.75□□□□□ -0.21
CLIP1-210ENST00000538120 NUTM2GQ5VZR2 741 aa13.75□□□□□ -0.21
CLIP1-210ENST00000538120 ZKSCAN2Q63HK3 967 aa13.75□□□□□ -0.21
CLIP1-210ENST00000538120 IL27Q8NEV9 243 aa13.75□□□□□ -0.21
CLIP1-210ENST00000538120 CALD1Q05682 793 aaKnown RBP13.74□□□□□ -0.21
CLIP1-210ENST00000538120 USP54Q70EL1 1684 aa13.74□□□□□ -0.21
CLIP1-210ENST00000538120 ARHGEF10O15013 1369 aa13.74□□□□□ -0.21
CLIP1-210ENST00000538120 NWD1Q149M9 1564 aa13.74□□□□□ -0.21
CLIP1-210ENST00000538120 GNAI1P63096 354 aa13.73□□□□□ -0.21
CLIP1-210ENST00000538120 LMOD3Q0VAK6 560 aa13.73□□□□□ -0.21
CLIP1-210ENST00000538120 DCTN1Q14203 1278 aa13.73□□□□□ -0.21
CLIP1-210ENST00000538120 ABTB2Q8N961 1025 aa13.73□□□□□ -0.21
CLIP1-210ENST00000538120 MBIPQ9NS73 344 aa13.73□□□□□ -0.21
CLIP1-210ENST00000538120 DLG5Q8TDM6 1919 aa13.73□□□□□ -0.21
CLIP1-210ENST00000538120 NOB1Q9ULX3 412 aaKnown RBP13.73□□□□□ -0.21
CLIP1-210ENST00000538120 VAMP4O75379 141 aa13.72□□□□□ -0.21
CLIP1-210ENST00000538120 TRIM27P14373 513 aa13.72□□□□□ -0.21
CLIP1-210ENST00000538120 AMPHP49418 695 aa13.72□□□□□ -0.21
CLIP1-210ENST00000538120 ALDH1L2Q3SY69 923 aa13.72□□□□□ -0.21
CLIP1-210ENST00000538120 DZIP1LQ8IYY4 767 aaKnown RBP13.72□□□□□ -0.21
CLIP1-210ENST00000538120 CFAP44Q96MT7 982 aa13.72□□□□□ -0.21
CLIP1-210ENST00000538120 AAMPQ13685 434 aa13.72□□□□□ -0.21
CLIP1-210ENST00000538120 MVPQ14764 893 aaKnown RBP13.72□□□□□ -0.21
CLIP1-210ENST00000538120 TSPYL6Q8N831 410 aa13.72□□□□□ -0.21
CLIP1-210ENST00000538120 EYA1Q99502 592 aa13.72□□□□□ -0.21
CLIP1-210ENST00000538120 PCDHB15Q9Y5E8 787 aa13.72□□□□□ -0.21
CLIP1-210ENST00000538120 HOXC9P31274 260 aa13.71□□□□□ -0.21
CLIP1-210ENST00000538120 ESCO1Q5FWF5 840 aa13.71□□□□□ -0.21
CLIP1-210ENST00000538120 IGSF1Q8N6C5 1336 aa13.71□□□□□ -0.21
CLIP1-210ENST00000538120 KDRP35968 1356 aa13.71□□□□□ -0.21
CLIP1-210ENST00000538120 ATF7IPQ6VMQ6 1270 aa13.71□□□□□ -0.21
CLIP1-210ENST00000538120 SPOCK2Q92563 424 aa13.71□□□□□ -0.21
CLIP1-210ENST00000538120 FARP1Q9Y4F1 1045 aaPredicted RBP13.71□□□□□ -0.21
CLIP1-210ENST00000538120 KIF24Q5T7B8 1368 aa13.7□□□□□ -0.22
CLIP1-210ENST00000538120 BRPF1P55201 1214 aaPredicted RBP13.7□□□□□ -0.22
CLIP1-210ENST00000538120 SLC4A3P48751 1232 aa13.7□□□□□ -0.22
CLIP1-210ENST00000538120 ZNF428Q96B54 188 aa13.7□□□□□ -0.22
CLIP1-210ENST00000538120 ORAI2Q96SN7 254 aa13.7□□□□□ -0.22
CLIP1-210ENST00000538120 MRPL50Q8N5N7 158 aaKnown RBP13.69□□□□□ -0.22
CLIP1-210ENST00000538120 C8orf58Q8NAV2 365 aa13.69□□□□□ -0.22
CLIP1-210ENST00000538120 CHMP4AQ9BY43 222 aa13.69□□□□□ -0.22
CLIP1-210ENST00000538120 PSME1Q06323 249 aa13.68□□□□□ -0.22
CLIP1-210ENST00000538120 MTHFSDQ2M296 383 aaKnown RBP13.68□□□□□ -0.22
CLIP1-210ENST00000538120 MCM10Q7L590 875 aa13.68□□□□□ -0.22
CLIP1-210ENST00000538120 PROSER2Q86WR7 435 aaPredicted RBP13.68□□□□□ -0.22
CLIP1-210ENST00000538120 FTSJ3Q8IY81 847 aaKnown RBP13.68□□□□□ -0.22
CLIP1-210ENST00000538120 FOXO3O43524 673 aa13.68□□□□□ -0.22
CLIP1-210ENST00000538120 KIF16BQ96L93 1317 aa13.68□□□□□ -0.22
CLIP1-210ENST00000538120 ELL2O00472 640 aaPredicted RBP13.67□□□□□ -0.22
CLIP1-210ENST00000538120 CHL1O00533 1208 aa13.67□□□□□ -0.22
CLIP1-210ENST00000538120 TMEM57Q8N5G2 664 aa13.67□□□□□ -0.22
CLIP1-210ENST00000538120 ANO8Q9HCE9 1232 aaPredicted RBP13.67□□□□□ -0.22
CLIP1-210ENST00000538120 CRB1P82279 1406 aa13.67□□□□□ -0.22
CLIP1-210ENST00000538120 NFAT5O94916 1531 aa13.67□□□□□ -0.22
CLIP1-210ENST00000538120 IPO8O15397 1037 aaKnown RBP13.66□□□□□ -0.22
CLIP1-210ENST00000538120 TWISTNBQ3B726 338 aaPredicted RBP13.66□□□□□ -0.22
CLIP1-210ENST00000538120 NUBP1P53384 320 aa13.66□□□□□ -0.22
CLIP1-210ENST00000538120 USP35Q9P2H5 1018 aa13.66□□□□□ -0.22
CLIP1-210ENST00000538120 RTL1A6NKG5 1358 aa13.65□□□□□ -0.22
CLIP1-210ENST00000538120 ITPRIPQ8IWB1 547 aa13.64□□□□□ -0.23
CLIP1-210ENST00000538120 IP6K1Q92551 441 aa13.64□□□□□ -0.23
CLIP1-210ENST00000538120 C19orf44Q9H6X5 657 aa13.64□□□□□ -0.23
CLIP1-210ENST00000538120 DDX19BQ9UMR2 479 aa13.64□□□□□ -0.23
CLIP1-210ENST00000538120 C1orf167Q5SNV9 1468 aa13.64□□□□□ -0.23
CLIP1-210ENST00000538120 RGS3P49796 1198 aa13.64□□□□□ -0.23
CLIP1-210ENST00000538120 XPCQ01831 940 aaPredicted RBP13.64□□□□□ -0.23
CLIP1-210ENST00000538120 ARHGAP45Q92619 1136 aa13.64□□□□□ -0.23
CLIP1-210ENST00000538120 KRT24Q2M2I5 525 aa13.63□□□□□ -0.23
CLIP1-210ENST00000538120 LTV1Q96GA3 475 aaPredicted RBP13.63□□□□□ -0.23
CLIP1-210ENST00000538120 ZBTB40Q9NUA8 1239 aa13.63□□□□□ -0.23
CLIP1-210ENST00000538120 KCNH5Q8NCM2 988 aa13.62□□□□□ -0.23
CLIP1-210ENST00000538120 GAS2L2Q8NHY3 880 aa13.62□□□□□ -0.23
CLIP1-210ENST00000538120 RWDD1Q9H446 243 aaPredicted RBP13.62□□□□□ -0.23
CLIP1-210ENST00000538120 KIAA0232Q92628 1395 aa13.61□□□□□ -0.23
CLIP1-210ENST00000538120 C8orf34Q49A92 452 aa13.61□□□□□ -0.23
CLIP1-210ENST00000538120 DDRGK1Q96HY6 314 aa13.61□□□□□ -0.23
CLIP1-210ENST00000538120 STRCP1A6NGW2 1772 aa13.61□□□□□ -0.23
CLIP1-210ENST00000538120 TMEM94Q12767 1356 aa13.61□□□□□ -0.23
CLIP1-210ENST00000538120 LTN1O94822 1766 aa13.61□□□□□ -0.23
CLIP1-210ENST00000538120 SLIT3O75094 1523 aa13.61□□□□□ -0.23
CLIP1-210ENST00000538120 HSPA2P54652 639 aa13.61□□□□□ -0.23
CLIP1-210ENST00000538120 NFKBIBQ15653 356 aa13.61□□□□□ -0.23
CLIP1-210ENST00000538120 KRT28Q7Z3Y7 464 aa13.61□□□□□ -0.23
CLIP1-210ENST00000538120 USHBP1Q8N6Y0 703 aa13.61□□□□□ -0.23
CLIP1-210ENST00000538120 TRPM3Q9HCF6 1732 aaPredicted RBP13.6□□□□□ -0.23
CLIP1-210ENST00000538120 HTATSF1O43719 755 aaKnown RBP13.6□□□□□ -0.23
CLIP1-210ENST00000538120 GCP02774 474 aa13.6□□□□□ -0.23
CLIP1-210ENST00000538120 RASEFQ8IZ41 740 aa13.6□□□□□ -0.23
CLIP1-210ENST00000538120 MIS18AQ9NYP9 233 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms