RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 PLEKHM2Q8IWE5 1019 aa14.33□□□□□ -0.12
SYNE1-234ENST00000536990 CLEC17AQ6ZS10 378 aa14.33□□□□□ -0.12
SYNE1-234ENST00000536990 FOXD4L1Q9NU39 408 aa14.33□□□□□ -0.12
SYNE1-234ENST00000536990 PLEKHG3A1L390 1219 aa14.32□□□□□ -0.12
SYNE1-234ENST00000536990 PTMSP20962 102 aa14.32□□□□□ -0.12
SYNE1-234ENST00000536990 DCTPP1Q9H773 170 aa14.32□□□□□ -0.12
SYNE1-234ENST00000536990 HSP90AA1P07900 732 aaKnown RBP14.32□□□□□ -0.12
SYNE1-234ENST00000536990 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.32□□□□□ -0.12
SYNE1-234ENST00000536990 HAP1P54257 671 aaPredicted RBP14.31□□□□□ -0.12
SYNE1-234ENST00000536990 NRKQ7Z2Y5 1582 aa14.31□□□□□ -0.12
SYNE1-234ENST00000536990 SSFA2P28290 1259 aa14.31□□□□□ -0.12
SYNE1-234ENST00000536990 LTKP29376 864 aa14.31□□□□□ -0.12
SYNE1-234ENST00000536990 PLEKHG1Q9ULL1 1385 aa14.3□□□□□ -0.12
SYNE1-234ENST00000536990 OVOS2A0A0J9YW53 1432 aa14.3□□□□□ -0.12
SYNE1-234ENST00000536990 OVOS2Q6IE36 1432 aa14.3□□□□□ -0.12
SYNE1-234ENST00000536990 TTC22Q5TAA0 569 aa14.3□□□□□ -0.12
SYNE1-234ENST00000536990 INTS3Q68E01 1043 aaKnown RBP14.3□□□□□ -0.12
SYNE1-234ENST00000536990 USP6P35125 1406 aa14.3□□□□□ -0.12
SYNE1-234ENST00000536990 ATP10DQ9P241 1426 aa14.3□□□□□ -0.12
SYNE1-234ENST00000536990 RGS12O14924 1447 aa14.29□□□□□ -0.12
SYNE1-234ENST00000536990 HSP90AB2PQ58FF8 381 aa14.29□□□□□ -0.12
SYNE1-234ENST00000536990 ERBB4Q15303 1308 aa14.29□□□□□ -0.12
SYNE1-234ENST00000536990 CHL1O00533 1208 aa14.28□□□□□ -0.12
SYNE1-234ENST00000536990 MCM10Q7L590 875 aa14.28□□□□□ -0.12
SYNE1-234ENST00000536990 SLC26A8Q96RN1 970 aa14.28□□□□□ -0.12
SYNE1-234ENST00000536990 TOPAZ1Q8N9V7 1692 aa14.28□□□□□ -0.12
SYNE1-234ENST00000536990 ESPNB1AK53 854 aa14.28□□□□□ -0.12
SYNE1-234ENST00000536990 RABEP1Q15276 862 aa14.28□□□□□ -0.12
SYNE1-234ENST00000536990 ANKRD44Q8N8A2 993 aa14.28□□□□□ -0.12
SYNE1-234ENST00000536990 SOX12O15370 315 aa14.28□□□□□ -0.12
SYNE1-234ENST00000536990 C16orf71Q8IYS4 520 aaPredicted RBP14.28□□□□□ -0.12
SYNE1-234ENST00000536990 AK9Q5TCS8 1911 aa14.27□□□□□ -0.12
SYNE1-234ENST00000536990 KRT24Q2M2I5 525 aa14.27□□□□□ -0.12
SYNE1-234ENST00000536990 USP26Q9BXU7 913 aa14.27□□□□□ -0.12
SYNE1-234ENST00000536990 EID1Q9Y6B2 187 aa14.27□□□□□ -0.12
SYNE1-234ENST00000536990 BAG4O95429 457 aaKnown RBP14.27□□□□□ -0.13
SYNE1-234ENST00000536990 USP31Q70CQ4 1352 aa14.27□□□□□ -0.13
SYNE1-234ENST00000536990 UBE2Q2Q8WVN8 375 aa14.26□□□□□ -0.13
SYNE1-234ENST00000536990 KIAA0232Q92628 1395 aa14.26□□□□□ -0.13
SYNE1-234ENST00000536990 KLHL40Q2TBA0 621 aa14.25□□□□□ -0.13
SYNE1-234ENST00000536990 OTUD7AQ8TE49 926 aaPredicted RBP14.25□□□□□ -0.13
SYNE1-234ENST00000536990 IBTKQ9P2D0 1353 aaPredicted RBP14.25□□□□□ -0.13
SYNE1-234ENST00000536990 PEAK1Q9H792 1746 aa14.25□□□□□ -0.13
SYNE1-234ENST00000536990 PTPRUQ92729 1446 aa14.25□□□□□ -0.13
SYNE1-234ENST00000536990 CEBPAP49715 358 aaPredicted RBP14.25□□□□□ -0.13
SYNE1-234ENST00000536990 CEP85Q6P2H3 762 aa14.25□□□□□ -0.13
SYNE1-234ENST00000536990 RPAP2Q8IXW5 612 aaPredicted RBP14.25□□□□□ -0.13
SYNE1-234ENST00000536990 AMOTL2Q9Y2J4 779 aa14.25□□□□□ -0.13
SYNE1-234ENST00000536990 NALCNQ8IZF0 1738 aa14.25□□□□□ -0.13
SYNE1-234ENST00000536990 NAP1L5Q96NT1 182 aaPredicted RBP14.25□□□□□ -0.13
SYNE1-234ENST00000536990 TTC21AQ8NDW8 1320 aa14.24□□□□□ -0.13
SYNE1-234ENST00000536990 GOLGA6L22H0YM25 854 aa14.24□□□□□ -0.13
SYNE1-234ENST00000536990 CYP2E1P05181 493 aaPredicted RBP14.24□□□□□ -0.13
SYNE1-234ENST00000536990 RTL1A6NKG5 1358 aa14.24□□□□□ -0.13
SYNE1-234ENST00000536990 PTPRCP08575 1304 aa14.24□□□□□ -0.13
SYNE1-234ENST00000536990 RGPD1P0DJD0 1748 aa14.23□□□□□ -0.13
SYNE1-234ENST00000536990 SSH2Q76I76 1423 aa14.23□□□□□ -0.13
SYNE1-234ENST00000536990 MAP3K19Q56UN5 1328 aa14.23□□□□□ -0.13
SYNE1-234ENST00000536990 ARHGEF10O15013 1369 aa14.23□□□□□ -0.13
SYNE1-234ENST00000536990 MSH6P52701 1360 aa14.23□□□□□ -0.13
SYNE1-234ENST00000536990 SDSP20132 328 aa14.23□□□□□ -0.13
SYNE1-234ENST00000536990 NGDNQ8NEJ9 315 aaKnown RBP14.23□□□□□ -0.13
SYNE1-234ENST00000536990 RTF1Q92541 710 aaKnown RBP14.23□□□□□ -0.13
SYNE1-234ENST00000536990 PPP1R9BQ96SB3 815 aa14.22□□□□□ -0.13
SYNE1-234ENST00000536990 DDX49Q9Y6V7 483 aaKnown RBP14.22□□□□□ -0.13
SYNE1-234ENST00000536990 CRB1P82279 1406 aa14.22□□□□□ -0.13
SYNE1-234ENST00000536990 NUCB2P80303 420 aa14.22□□□□□ -0.13
SYNE1-234ENST00000536990 TRIM44Q96DX7 344 aaPredicted RBP14.22□□□□□ -0.13
SYNE1-234ENST00000536990 TBX22Q9Y458 520 aa14.22□□□□□ -0.13
SYNE1-234ENST00000536990 SLC4A2P04920 1241 aa14.21□□□□□ -0.13
SYNE1-234ENST00000536990 MTHFSDQ2M296 383 aaKnown RBP14.21□□□□□ -0.13
SYNE1-234ENST00000536990 MIS18AQ9NYP9 233 aa14.21□□□□□ -0.13
SYNE1-234ENST00000536990 FOXO3O43524 673 aa14.21□□□□□ -0.13
SYNE1-234ENST00000536990 SMARCA5O60264 1052 aaPredicted RBP14.21□□□□□ -0.13
SYNE1-234ENST00000536990 AMPHP49418 695 aa14.21□□□□□ -0.13
SYNE1-234ENST00000536990 MEIS3Q99687 375 aa14.21□□□□□ -0.13
SYNE1-234ENST00000536990 SBNO1A3KN83 1393 aa14.21□□□□□ -0.14
SYNE1-234ENST00000536990 FLT4P35916 1363 aa14.21□□□□□ -0.14
SYNE1-234ENST00000536990 TSPYL4Q9UJ04 414 aa14.2□□□□□ -0.14
SYNE1-234ENST00000536990 CCDC173Q0VFZ6 552 aa14.2□□□□□ -0.14
SYNE1-234ENST00000536990 PLPPR3Q6T4P5 718 aa14.2□□□□□ -0.14
SYNE1-234ENST00000536990 NASPP49321 788 aaPredicted RBP14.2□□□□□ -0.14
SYNE1-234ENST00000536990 ZNF445P59923 1031 aa14.2□□□□□ -0.14
SYNE1-234ENST00000536990 PKP1Q13835 747 aa14.2□□□□□ -0.14
SYNE1-234ENST00000536990 LMBRD1Q9NUN5 540 aa14.2□□□□□ -0.14
SYNE1-234ENST00000536990 FMN2Q9NZ56 1722 aa14.19□□□□□ -0.14
SYNE1-234ENST00000536990 MCTP1Q6DN14 999 aa14.19□□□□□ -0.14
SYNE1-234ENST00000536990 CWC22Q9HCG8 908 aaKnown RBP14.19□□□□□ -0.14
SYNE1-234ENST00000536990 EYA1Q99502 592 aa14.18□□□□□ -0.14
SYNE1-234ENST00000536990 CASC1Q6TDU7 716 aa14.18□□□□□ -0.14
SYNE1-234ENST00000536990 RGPD8O14715 1765 aaPredicted RBP14.18□□□□□ -0.14
SYNE1-234ENST00000536990 KDRP35968 1356 aa14.18□□□□□ -0.14
SYNE1-234ENST00000536990 APBB1O00213 710 aa14.17□□□□□ -0.14
SYNE1-234ENST00000536990 SLIT1O75093 1534 aa14.17□□□□□ -0.14
SYNE1-234ENST00000536990 ZGPATQ8N5A5 531 aaKnown RBP14.17□□□□□ -0.14
SYNE1-234ENST00000536990 ARHGAP23Q9P227 1491 aa14.17□□□□□ -0.14
SYNE1-234ENST00000536990 IGSF1Q8N6C5 1336 aa14.17□□□□□ -0.14
SYNE1-234ENST00000536990 ST18O60284 1047 aa14.17□□□□□ -0.14
SYNE1-234ENST00000536990 REC8O95072 547 aa14.17□□□□□ -0.14
SYNE1-234ENST00000536990 NLRP6P59044 892 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms