RNA–Protein interactions for RNA: ENST00000535818.1

VPS37C-202, Transcript of VPS37C, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS37C, Length 865 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS37C-202ENST00000535818 SHANK3Q9BYB0 1731 aa30.05■■■□□ 2.4
VPS37C-202ENST00000535818 IGSF1Q8N6C5 1336 aa30.03■■■□□ 2.4
VPS37C-202ENST00000535818 BCL11BQ9C0K0 894 aaPredicted RBP30.03■■■□□ 2.4
VPS37C-202ENST00000535818 ACSBG1Q96GR2 724 aa30.02■■■□□ 2.4
VPS37C-202ENST00000535818 PCDH11XQ9BZA7 1347 aa30.01■■■□□ 2.4
VPS37C-202ENST00000535818 PCDH11YQ9BZA8 1340 aa30.01■■■□□ 2.4
VPS37C-202ENST00000535818 DDX10Q13206 875 aaKnown RBP30.01■■■□□ 2.39
VPS37C-202ENST00000535818 NHSQ6T4R5 1651 aa30■■■□□ 2.39
VPS37C-202ENST00000535818 IL13P35225 146 aa29.99■■■□□ 2.39
VPS37C-202ENST00000535818 EZH2Q15910 746 aaKnown RBP29.99■■■□□ 2.39
VPS37C-202ENST00000535818 PKD1L3Q7Z443 1732 aa29.99■■■□□ 2.39
VPS37C-202ENST00000535818 SPG7Q9UQ90 795 aa29.98■■■□□ 2.39
VPS37C-202ENST00000535818 PTF1AQ7RTS3 328 aa29.97■■■□□ 2.39
VPS37C-202ENST00000535818 PARD3Q8TEW0 1356 aa29.97■■■□□ 2.39
VPS37C-202ENST00000535818 KCNQ2O43526 872 aa29.96■■■□□ 2.39
VPS37C-202ENST00000535818 DIAPH1O60610 1272 aaKnown RBP29.96■■■□□ 2.39
VPS37C-202ENST00000535818 CAMKK2Q96RR4 588 aa29.96■■■□□ 2.39
VPS37C-202ENST00000535818 DOT1LQ8TEK3 1739 aa29.95■■■□□ 2.38
VPS37C-202ENST00000535818 KAT6BQ8WYB5 2073 aa29.94■■■□□ 2.38
VPS37C-202ENST00000535818 SULT6B1Q6IMI4 303 aa29.94■■■□□ 2.38
VPS37C-202ENST00000535818 AEBP1Q8IUX7 1158 aa29.93■■■□□ 2.38
VPS37C-202ENST00000535818 CFAP53Q96M91 514 aa29.93■■■□□ 2.38
VPS37C-202ENST00000535818 PPP2R1AP30153 589 aa29.92■■■□□ 2.38
VPS37C-202ENST00000535818 SYTL4Q96C24 671 aaPredicted RBP29.92■■■□□ 2.38
VPS37C-202ENST00000535818 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.92■■■□□ 2.38
VPS37C-202ENST00000535818 PLEKHG2Q9H7P9 1386 aa29.91■■■□□ 2.38
VPS37C-202ENST00000535818 RGPD3A6NKT7 1758 aaPredicted RBP29.91■■■□□ 2.38
VPS37C-202ENST00000535818 RGPD4Q7Z3J3 1758 aa29.91■■■□□ 2.38
VPS37C-202ENST00000535818 CYP27B1O15528 508 aa29.91■■■□□ 2.38
VPS37C-202ENST00000535818 PLSCR1O15162 318 aa29.9■■■□□ 2.38
VPS37C-202ENST00000535818 COL3A1P02461 1466 aaPredicted RBP29.9■■■□□ 2.38
VPS37C-202ENST00000535818 RREB1Q92766 1687 aa29.9■■■□□ 2.38
VPS37C-202ENST00000535818 BTAF1O14981 1849 aa29.89■■■□□ 2.38
VPS37C-202ENST00000535818 PRIM1P49642 420 aaKnown RBP29.88■■■□□ 2.37
VPS37C-202ENST00000535818 KDRP35968 1356 aa29.88■■■□□ 2.37
VPS37C-202ENST00000535818 PLEKHO1Q53GL0 409 aaPredicted RBP29.87■■■□□ 2.37
VPS37C-202ENST00000535818 U2SURPO15042 1029 aaKnown RBP29.86■■■□□ 2.37
VPS37C-202ENST00000535818 HMOX1P09601 288 aa29.86■■■□□ 2.37
VPS37C-202ENST00000535818 IFNL2Q8IZJ0 200 aa29.86■■■□□ 2.37
VPS37C-202ENST00000535818 NUP188Q5SRE5 1749 aa29.85■■■□□ 2.37
VPS37C-202ENST00000535818 AMOTQ4VCS5 1084 aa29.85■■■□□ 2.37
VPS37C-202ENST00000535818 PHKG2P15735 406 aa29.83■■■□□ 2.37
VPS37C-202ENST00000535818 ZNF530Q6P9A1 599 aaPredicted RBP29.82■■■□□ 2.36
VPS37C-202ENST00000535818 ZNF316A6NFI3 1004 aaPredicted RBP29.81■■■□□ 2.36
VPS37C-202ENST00000535818 NUDCQ9Y266 331 aa29.81■■■□□ 2.36
VPS37C-202ENST00000535818 TOGARAM1Q9Y4F4 1720 aa29.8■■■□□ 2.36
VPS37C-202ENST00000535818 NKX1-1Q15270 411 aaPredicted RBP29.8■■■□□ 2.36
VPS37C-202ENST00000535818 RALBP1Q15311 655 aa29.8■■■□□ 2.36
VPS37C-202ENST00000535818 TXNRD1Q16881 649 aa29.79■■■□□ 2.36
VPS37C-202ENST00000535818 NBPF14Q5TI25 921 aa29.79■■■□□ 2.36
VPS37C-202ENST00000535818 C1orf141Q5JVX7 400 aa29.78■■■□□ 2.36
VPS37C-202ENST00000535818 PSDA5PKW4 1024 aaPredicted RBP29.77■■■□□ 2.36
VPS37C-202ENST00000535818 HSP90AB1P08238 724 aaKnown RBP29.77■■■□□ 2.36
VPS37C-202ENST00000535818 MPRIPQ6WCQ1 1025 aa29.77■■■□□ 2.36
VPS37C-202ENST00000535818 R3HDM1Q15032 1099 aaKnown RBP29.75■■■□□ 2.35
VPS37C-202ENST00000535818 PROM2Q8N271 834 aa29.75■■■□□ 2.35
VPS37C-202ENST00000535818 ITGB4P16144 1822 aa29.75■■■□□ 2.35
VPS37C-202ENST00000535818 U2AF1L5P0DN76 240 aaPredicted RBP29.72■■■□□ 2.35
VPS37C-202ENST00000535818 U2AF1Q01081 240 aaKnown RBP eCLIP29.72■■■□□ 2.35
VPS37C-202ENST00000535818 TMOD3Q9NYL9 352 aa29.72■■■□□ 2.35
VPS37C-202ENST00000535818 DCAF5Q96JK2 942 aa29.71■■■□□ 2.35
VPS37C-202ENST00000535818 MYBBP1AQ9BQG0 1328 aaKnown RBP29.7■■■□□ 2.34
VPS37C-202ENST00000535818 LY75O60449 1722 aa29.68■■■□□ 2.34
VPS37C-202ENST00000535818 AKAP4Q5JQC9 854 aa29.68■■■□□ 2.34
VPS37C-202ENST00000535818 PIGBQ92521 554 aa29.68■■■□□ 2.34
VPS37C-202ENST00000535818 KDM6AO15550 1401 aaPredicted RBP29.68■■■□□ 2.34
VPS37C-202ENST00000535818 MTHFSDQ2M296 383 aaKnown RBP29.67■■■□□ 2.34
VPS37C-202ENST00000535818 SLC27A3Q5K4L6 730 aa29.67■■■□□ 2.34
VPS37C-202ENST00000535818 ANO8Q9HCE9 1232 aaPredicted RBP29.67■■■□□ 2.34
VPS37C-202ENST00000535818 PALLDQ8WX93 1383 aa29.66■■■□□ 2.34
VPS37C-202ENST00000535818 ERVV-2B6SEH9 535 aa29.66■■■□□ 2.34
VPS37C-202ENST00000535818 PRKAR2BP31323 418 aa29.66■■■□□ 2.34
VPS37C-202ENST00000535818 STK32BQ9NY57 414 aa29.66■■■□□ 2.34
VPS37C-202ENST00000535818 SMARCC1Q92922 1105 aaPredicted RBP29.65■■■□□ 2.34
VPS37C-202ENST00000535818 RSPH6AQ9H0K4 717 aa29.65■■■□□ 2.34
VPS37C-202ENST00000535818 LRRC4BQ9NT99 713 aa29.64■■■□□ 2.34
VPS37C-202ENST00000535818 CCNL1Q9UK58 526 aaPredicted RBP29.64■■■□□ 2.34
VPS37C-202ENST00000535818 CABP4P57796 275 aa29.63■■■□□ 2.33
VPS37C-202ENST00000535818 GAS2L2Q8NHY3 880 aa29.63■■■□□ 2.33
VPS37C-202ENST00000535818 PRKRIP1Q9H875 184 aaPredicted RBP29.63■■■□□ 2.33
VPS37C-202ENST00000535818 PAPPAQ13219 1627 aa29.62■■■□□ 2.33
VPS37C-202ENST00000535818 FCHSD2O94868 740 aa29.61■■■□□ 2.33
VPS37C-202ENST00000535818 KCNQ4P56696 695 aa29.61■■■□□ 2.33
VPS37C-202ENST00000535818 SCN11AQ9UI33 1791 aa29.61■■■□□ 2.33
VPS37C-202ENST00000535818 SLC15A2Q16348 729 aa29.6■■■□□ 2.33
VPS37C-202ENST00000535818 ASAP1Q9ULH1 1129 aa29.58■■■□□ 2.33
VPS37C-202ENST00000535818 MAP3K5Q99683 1374 aa29.57■■■□□ 2.32
VPS37C-202ENST00000535818 NEFMP07197 916 aa29.57■■■□□ 2.32
VPS37C-202ENST00000535818 PHACTR3Q96KR7 559 aa29.57■■■□□ 2.32
VPS37C-202ENST00000535818 RNMTO43148 476 aaKnown RBP29.56■■■□□ 2.32
VPS37C-202ENST00000535818 VIRMAQ69YN4 1812 aaKnown RBP29.56■■■□□ 2.32
VPS37C-202ENST00000535818 NFATC2IPQ8NCF5 419 aa29.55■■■□□ 2.32
VPS37C-202ENST00000535818 LGR6Q9HBX8 967 aa29.55■■■□□ 2.32
VPS37C-202ENST00000535818 ATG3Q9NT62 314 aa29.55■■■□□ 2.32
VPS37C-202ENST00000535818 GNAT3A8MTJ3 354 aa29.54■■■□□ 2.32
VPS37C-202ENST00000535818 ZNF827Q17R98 1081 aa29.54■■■□□ 2.32
VPS37C-202ENST00000535818 HMGB2P26583 209 aaKnown RBP29.53■■■□□ 2.32
VPS37C-202ENST00000535818 C5P01031 1676 aa29.53■■■□□ 2.32
VPS37C-202ENST00000535818 LOC102724428A0A0B4J2F2 783 aa29.52■■■□□ 2.32
VPS37C-202ENST00000535818 SIK1P57059 783 aa29.52■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms