RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 CGNL1Q0VF96 1302 aa7.01□□□□□ -1.29
USH1C-210ENST00000534556 SCN11AQ9UI33 1791 aa7.01□□□□□ -1.29
USH1C-210ENST00000534556 NSD2O96028 1365 aa7.01□□□□□ -1.29
USH1C-210ENST00000534556 FLT4P35916 1363 aa7.01□□□□□ -1.29
USH1C-210ENST00000534556 PSDA5PKW4 1024 aaPredicted RBP7.01□□□□□ -1.29
USH1C-210ENST00000534556 EXOC5O00471 708 aa7.01□□□□□ -1.29
USH1C-210ENST00000534556 APBA3O96018 575 aa7.01□□□□□ -1.29
USH1C-210ENST00000534556 IL2RBP14784 551 aa7.01□□□□□ -1.29
USH1C-210ENST00000534556 ACSBG1Q96GR2 724 aa7.01□□□□□ -1.29
USH1C-210ENST00000534556 QSER1Q2KHR3 1735 aa7.01□□□□□ -1.29
USH1C-210ENST00000534556 LRP5O75197 1615 aa7.01□□□□□ -1.29
USH1C-210ENST00000534556 BAG6P46379 1132 aa7□□□□□ -1.29
USH1C-210ENST00000534556 EYA1Q99502 592 aa7□□□□□ -1.29
USH1C-210ENST00000534556 COL24A1Q17RW2 1714 aa7□□□□□ -1.29
USH1C-210ENST00000534556 COL3A1P02461 1466 aaPredicted RBP6.99□□□□□ -1.29
USH1C-210ENST00000534556 KIF24Q5T7B8 1368 aa6.99□□□□□ -1.29
USH1C-210ENST00000534556 PPM1GO15355 546 aaPredicted RBP6.99□□□□□ -1.29
USH1C-210ENST00000534556 EIF4A2Q14240 407 aaKnown RBP6.99□□□□□ -1.29
USH1C-210ENST00000534556 CDCA7Q9BWT1 371 aaPredicted RBP6.99□□□□□ -1.29
USH1C-210ENST00000534556 BCL11BQ9C0K0 894 aaPredicted RBP6.99□□□□□ -1.29
USH1C-210ENST00000534556 PDGFDQ9GZP0 370 aaPredicted RBP6.99□□□□□ -1.29
USH1C-210ENST00000534556 ANO8Q9HCE9 1232 aaPredicted RBP6.99□□□□□ -1.29
USH1C-210ENST00000534556 C5P01031 1676 aa6.99□□□□□ -1.29
USH1C-210ENST00000534556 DLG5Q8TDM6 1919 aa6.99□□□□□ -1.29
USH1C-210ENST00000534556 MYH14Q7Z406 1995 aaKnown RBP6.99□□□□□ -1.29
USH1C-210ENST00000534556 CYP27B1O15528 508 aa6.98□□□□□ -1.29
USH1C-210ENST00000534556 SF3B2Q13435 895 aaKnown RBP6.98□□□□□ -1.29
USH1C-210ENST00000534556 R3HDM1Q15032 1099 aaKnown RBP6.98□□□□□ -1.29
USH1C-210ENST00000534556 DDX54Q8TDD1 881 aaKnown RBP6.98□□□□□ -1.29
USH1C-210ENST00000534556 LRRC4BQ9NT99 713 aa6.98□□□□□ -1.29
USH1C-210ENST00000534556 UBR3Q6ZT12 1888 aa6.98□□□□□ -1.29
USH1C-210ENST00000534556 GOLGB1Q14789 3259 aaKnown RBP6.98□□□□□ -1.29
USH1C-210ENST00000534556 SIPA1L3O60292 1781 aaPredicted RBP6.97□□□□□ -1.29
USH1C-210ENST00000534556 PLSCR1O15162 318 aa6.97□□□□□ -1.29
USH1C-210ENST00000534556 KCNQ4P56696 695 aa6.97□□□□□ -1.29
USH1C-210ENST00000534556 AEBP1Q8IUX7 1158 aa6.97□□□□□ -1.29
USH1C-210ENST00000534556 ZCRB1Q8TBF4 217 aaKnown RBP6.97□□□□□ -1.29
USH1C-210ENST00000534556 IGSF1Q8N6C5 1336 aa6.97□□□□□ -1.29
USH1C-210ENST00000534556 ADAMTS7Q9UKP4 1686 aa6.96□□□□□ -1.29
USH1C-210ENST00000534556 COL5A3P25940 1745 aaPredicted RBP6.96□□□□□ -1.29
USH1C-210ENST00000534556 IL13P35225 146 aa6.96□□□□□ -1.3
USH1C-210ENST00000534556 PRIM1P49642 420 aaKnown RBP6.96□□□□□ -1.3
USH1C-210ENST00000534556 CNGB1Q14028 1251 aaPredicted RBP6.96□□□□□ -1.3
USH1C-210ENST00000534556 CC2D1BQ5T0F9 858 aaKnown RBP6.96□□□□□ -1.3
USH1C-210ENST00000534556 MORC1Q86VD1 984 aa6.96□□□□□ -1.3
USH1C-210ENST00000534556 KNSTRNQ9Y448 316 aa6.96□□□□□ -1.3
USH1C-210ENST00000534556 PARD3Q8TEW0 1356 aa6.95□□□□□ -1.3
USH1C-210ENST00000534556 MTHFSP49914 203 aa6.95□□□□□ -1.3
USH1C-210ENST00000534556 TXNRD1Q16881 649 aa6.95□□□□□ -1.3
USH1C-210ENST00000534556 NPC1L1Q9UHC9 1359 aa6.95□□□□□ -1.3
USH1C-210ENST00000534556 KDM6AO15550 1401 aaPredicted RBP6.94□□□□□ -1.3
USH1C-210ENST00000534556 C4BP0C0L5 1744 aa6.94□□□□□ -1.3
USH1C-210ENST00000534556 TJP1Q07157 1748 aa6.94□□□□□ -1.3
USH1C-210ENST00000534556 TATP17735 454 aaPredicted RBP6.94□□□□□ -1.3
USH1C-210ENST00000534556 ZNF827Q17R98 1081 aa6.94□□□□□ -1.3
USH1C-210ENST00000534556 RAPGEF4Q8WZA2 1011 aa6.94□□□□□ -1.3
USH1C-210ENST00000534556 UTRNP46939 3433 aa6.94□□□□□ -1.3
USH1C-210ENST00000534556 KDRP35968 1356 aa6.94□□□□□ -1.3
USH1C-210ENST00000534556 UBR2Q8IWV8 1755 aa6.93□□□□□ -1.3
USH1C-210ENST00000534556 NKX1-1Q15270 411 aaPredicted RBP6.93□□□□□ -1.3
USH1C-210ENST00000534556 AMIGO3Q86WK7 504 aa6.93□□□□□ -1.3
USH1C-210ENST00000534556 ZNF831Q5JPB2 1677 aa6.93□□□□□ -1.3
USH1C-210ENST00000534556 C4AP0C0L4 1744 aa6.93□□□□□ -1.3
USH1C-210ENST00000534556 PHKG2P15735 406 aa6.92□□□□□ -1.3
USH1C-210ENST00000534556 SMIM5Q71RC9 77 aa6.92□□□□□ -1.3
USH1C-210ENST00000534556 PCDH11XQ9BZA7 1347 aa6.92□□□□□ -1.3
USH1C-210ENST00000534556 PCDH11YQ9BZA8 1340 aa6.92□□□□□ -1.3
USH1C-210ENST00000534556 CICQ96RK0 1608 aaPredicted RBP6.91□□□□□ -1.3
USH1C-210ENST00000534556 HMOX1P09601 288 aa6.91□□□□□ -1.3
USH1C-210ENST00000534556 SLC15A2Q16348 729 aa6.91□□□□□ -1.3
USH1C-210ENST00000534556 SULT6B1Q6IMI4 303 aa6.91□□□□□ -1.3
USH1C-210ENST00000534556 PIGBQ92521 554 aa6.91□□□□□ -1.3
USH1C-210ENST00000534556 AKT1S1Q96B36 256 aa6.91□□□□□ -1.3
USH1C-210ENST00000534556 SYTL4Q96C24 671 aaPredicted RBP6.91□□□□□ -1.3
USH1C-210ENST00000534556 SLC4A9Q96Q91 983 aa6.91□□□□□ -1.3
USH1C-210ENST00000534556 PPP2R1AP30153 589 aa6.9□□□□□ -1.3
USH1C-210ENST00000534556 PTGER2P43116 358 aa6.9□□□□□ -1.3
USH1C-210ENST00000534556 MPRIPQ6WCQ1 1025 aa6.9□□□□□ -1.3
USH1C-210ENST00000534556 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.9□□□□□ -1.3
USH1C-210ENST00000534556 ASAP1Q9ULH1 1129 aa6.9□□□□□ -1.3
USH1C-210ENST00000534556 ZBTB7AO95365 584 aa6.89□□□□□ -1.31
USH1C-210ENST00000534556 ITPK1Q13572 414 aa6.89□□□□□ -1.31
USH1C-210ENST00000534556 SGIP1Q9BQI5 828 aa6.89□□□□□ -1.31
USH1C-210ENST00000534556 LGR6Q9HBX8 967 aa6.89□□□□□ -1.31
USH1C-210ENST00000534556 SPG7Q9UQ90 795 aa6.89□□□□□ -1.31
USH1C-210ENST00000534556 PNPLA7Q6ZV29 1317 aa6.89□□□□□ -1.31
USH1C-210ENST00000534556 KIAA1551Q9HCM1 1747 aa6.89□□□□□ -1.31
USH1C-210ENST00000534556 KCPQ6ZWJ8 1503 aa6.88□□□□□ -1.31
USH1C-210ENST00000534556 MRC1P22897 1456 aa6.88□□□□□ -1.31
USH1C-210ENST00000534556 PALLDQ8WX93 1383 aa6.88□□□□□ -1.31
USH1C-210ENST00000534556 PLEKHG2Q9H7P9 1386 aa6.88□□□□□ -1.31
USH1C-210ENST00000534556 DIAPH1O60610 1272 aaKnown RBP6.88□□□□□ -1.31
USH1C-210ENST00000534556 DDX10Q13206 875 aaKnown RBP6.88□□□□□ -1.31
USH1C-210ENST00000534556 MTHFSDQ2M296 383 aaKnown RBP6.88□□□□□ -1.31
USH1C-210ENST00000534556 NBPF14Q5TI25 921 aa6.88□□□□□ -1.31
USH1C-210ENST00000534556 ZNF530Q6P9A1 599 aaPredicted RBP6.88□□□□□ -1.31
USH1C-210ENST00000534556 IFNL2Q8IZJ0 200 aa6.88□□□□□ -1.31
USH1C-210ENST00000534556 PHACTR3Q96KR7 559 aa6.88□□□□□ -1.31
USH1C-210ENST00000534556 ATG3Q9NT62 314 aa6.88□□□□□ -1.31
USH1C-210ENST00000534556 ATF5Q9Y2D1 282 aaPredicted RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms