RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 ZCRB1Q8TBF4 217 aaKnown RBP20.38■□□□□ 0.85
CPSF1-208ENST00000532560 RGPD3A6NKT7 1758 aaPredicted RBP20.36■□□□□ 0.85
CPSF1-208ENST00000532560 RGPD4Q7Z3J3 1758 aa20.36■□□□□ 0.85
CPSF1-208ENST00000532560 PARD3Q8TEW0 1356 aa20.36■□□□□ 0.85
CPSF1-208ENST00000532560 CNGB1Q14028 1251 aaPredicted RBP20.36■□□□□ 0.85
CPSF1-208ENST00000532560 BCL11BQ9C0K0 894 aaPredicted RBP20.36■□□□□ 0.85
CPSF1-208ENST00000532560 COL3A1P02461 1466 aaPredicted RBP20.36■□□□□ 0.85
CPSF1-208ENST00000532560 PCDH11XQ9BZA7 1347 aa20.35■□□□□ 0.85
CPSF1-208ENST00000532560 PCDH11YQ9BZA8 1340 aa20.35■□□□□ 0.85
CPSF1-208ENST00000532560 IL13P35225 146 aa20.35■□□□□ 0.85
CPSF1-208ENST00000532560 DDX54Q8TDD1 881 aaKnown RBP20.35■□□□□ 0.85
CPSF1-208ENST00000532560 APBA3O96018 575 aa20.34■□□□□ 0.85
CPSF1-208ENST00000532560 KDRP35968 1356 aa20.34■□□□□ 0.85
CPSF1-208ENST00000532560 EN1Q05925 392 aaPredicted RBP20.33■□□□□ 0.85
CPSF1-208ENST00000532560 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.33■□□□□ 0.85
CPSF1-208ENST00000532560 RREB1Q92766 1687 aa20.32■□□□□ 0.84
CPSF1-208ENST00000532560 CAMKK2Q96RR4 588 aa20.32■□□□□ 0.84
CPSF1-208ENST00000532560 DOT1LQ8TEK3 1739 aa20.32■□□□□ 0.84
CPSF1-208ENST00000532560 DDX10Q13206 875 aaKnown RBP20.31■□□□□ 0.84
CPSF1-208ENST00000532560 PTF1AQ7RTS3 328 aa20.31■□□□□ 0.84
CPSF1-208ENST00000532560 DIAPH1O60610 1272 aaKnown RBP20.3■□□□□ 0.84
CPSF1-208ENST00000532560 PPP2R1AP30153 589 aa20.3■□□□□ 0.84
CPSF1-208ENST00000532560 SPG7Q9UQ90 795 aa20.3■□□□□ 0.84
CPSF1-208ENST00000532560 CYP27B1O15528 508 aa20.29■□□□□ 0.84
CPSF1-208ENST00000532560 KCNQ2O43526 872 aa20.29■□□□□ 0.84
CPSF1-208ENST00000532560 EZH2Q15910 746 aaKnown RBP20.29■□□□□ 0.84
CPSF1-208ENST00000532560 AEBP1Q8IUX7 1158 aa20.29■□□□□ 0.84
CPSF1-208ENST00000532560 ACSBG1Q96GR2 724 aa20.29■□□□□ 0.84
CPSF1-208ENST00000532560 BTAF1O14981 1849 aa20.29■□□□□ 0.84
CPSF1-208ENST00000532560 PLSCR1O15162 318 aa20.28■□□□□ 0.84
CPSF1-208ENST00000532560 NUP188Q5SRE5 1749 aa20.27■□□□□ 0.84
CPSF1-208ENST00000532560 SULT6B1Q6IMI4 303 aa20.27■□□□□ 0.84
CPSF1-208ENST00000532560 CFAP53Q96M91 514 aa20.26■□□□□ 0.83
CPSF1-208ENST00000532560 TOGARAM1Q9Y4F4 1720 aa20.26■□□□□ 0.83
CPSF1-208ENST00000532560 NKX1-1Q15270 411 aaPredicted RBP20.25■□□□□ 0.83
CPSF1-208ENST00000532560 SRCAPQ6ZRS2 3230 aa20.25■□□□□ 0.83
CPSF1-208ENST00000532560 KAT6BQ8WYB5 2073 aa20.23■□□□□ 0.83
CPSF1-208ENST00000532560 RALBP1Q15311 655 aa20.23■□□□□ 0.83
CPSF1-208ENST00000532560 AMOTQ4VCS5 1084 aa20.23■□□□□ 0.83
CPSF1-208ENST00000532560 PLEKHO1Q53GL0 409 aaPredicted RBP20.23■□□□□ 0.83
CPSF1-208ENST00000532560 PHKG2P15735 406 aa20.22■□□□□ 0.83
CPSF1-208ENST00000532560 PRIM1P49642 420 aaKnown RBP20.22■□□□□ 0.83
CPSF1-208ENST00000532560 IFNL2Q8IZJ0 200 aa20.22■□□□□ 0.83
CPSF1-208ENST00000532560 SYTL4Q96C24 671 aaPredicted RBP20.21■□□□□ 0.83
CPSF1-208ENST00000532560 HMOX1P09601 288 aa20.2■□□□□ 0.82
CPSF1-208ENST00000532560 ITGB4P16144 1822 aa20.19■□□□□ 0.82
CPSF1-208ENST00000532560 ZNF316A6NFI3 1004 aaPredicted RBP20.19■□□□□ 0.82
CPSF1-208ENST00000532560 ZNF530Q6P9A1 599 aaPredicted RBP20.19■□□□□ 0.82
CPSF1-208ENST00000532560 U2SURPO15042 1029 aaKnown RBP20.18■□□□□ 0.82
CPSF1-208ENST00000532560 HSP90AB1P08238 724 aaKnown RBP20.18■□□□□ 0.82
CPSF1-208ENST00000532560 TXNRD1Q16881 649 aa20.18■□□□□ 0.82
CPSF1-208ENST00000532560 PROM2Q8N271 834 aa20.18■□□□□ 0.82
CPSF1-208ENST00000532560 NUDCQ9Y266 331 aa20.18■□□□□ 0.82
CPSF1-208ENST00000532560 LY75O60449 1722 aa20.17■□□□□ 0.82
CPSF1-208ENST00000532560 KDM6AO15550 1401 aaPredicted RBP20.16■□□□□ 0.82
CPSF1-208ENST00000532560 PAPPAQ13219 1627 aa20.16■□□□□ 0.82
CPSF1-208ENST00000532560 C1orf141Q5JVX7 400 aa20.15■□□□□ 0.82
CPSF1-208ENST00000532560 DCAF5Q96JK2 942 aa20.15■□□□□ 0.82
CPSF1-208ENST00000532560 MYBBP1AQ9BQG0 1328 aaKnown RBP20.15■□□□□ 0.82
CPSF1-208ENST00000532560 NBPF14Q5TI25 921 aa20.13■□□□□ 0.81
CPSF1-208ENST00000532560 MPRIPQ6WCQ1 1025 aa20.13■□□□□ 0.81
CPSF1-208ENST00000532560 RSPH6AQ9H0K4 717 aa20.13■□□□□ 0.81
CPSF1-208ENST00000532560 ERVV-2B6SEH9 535 aa20.12■□□□□ 0.81
CPSF1-208ENST00000532560 AKAP4Q5JQC9 854 aa20.12■□□□□ 0.81
CPSF1-208ENST00000532560 SLC27A3Q5K4L6 730 aa20.12■□□□□ 0.81
CPSF1-208ENST00000532560 TMOD3Q9NYL9 352 aa20.12■□□□□ 0.81
CPSF1-208ENST00000532560 SCN11AQ9UI33 1791 aa20.11■□□□□ 0.81
CPSF1-208ENST00000532560 ADAMTS7Q9UKP4 1686 aa20.11■□□□□ 0.81
CPSF1-208ENST00000532560 U2AF1L5P0DN76 240 aaPredicted RBP20.11■□□□□ 0.81
CPSF1-208ENST00000532560 U2AF1Q01081 240 aaKnown RBP eCLIP20.11■□□□□ 0.81
CPSF1-208ENST00000532560 R3HDM1Q15032 1099 aaKnown RBP20.11■□□□□ 0.81
CPSF1-208ENST00000532560 PIGBQ92521 554 aa20.11■□□□□ 0.81
CPSF1-208ENST00000532560 PRKRIP1Q9H875 184 aaPredicted RBP20.11■□□□□ 0.81
CPSF1-208ENST00000532560 ANO8Q9HCE9 1232 aaPredicted RBP20.11■□□□□ 0.81
CPSF1-208ENST00000532560 PALLDQ8WX93 1383 aa20.1■□□□□ 0.81
CPSF1-208ENST00000532560 PSDA5PKW4 1024 aaPredicted RBP20.1■□□□□ 0.81
CPSF1-208ENST00000532560 PRKAR2BP31323 418 aa20.1■□□□□ 0.81
CPSF1-208ENST00000532560 MTHFSDQ2M296 383 aaKnown RBP20.1■□□□□ 0.81
CPSF1-208ENST00000532560 MRC1P22897 1456 aa20.1■□□□□ 0.81
CPSF1-208ENST00000532560 FCHSD2O94868 740 aa20.09■□□□□ 0.81
CPSF1-208ENST00000532560 SMARCC1Q92922 1105 aaPredicted RBP20.09■□□□□ 0.81
CPSF1-208ENST00000532560 LRRC4BQ9NT99 713 aa20.09■□□□□ 0.81
CPSF1-208ENST00000532560 GAS2L2Q8NHY3 880 aa20.08■□□□□ 0.81
CPSF1-208ENST00000532560 VIRMAQ69YN4 1812 aaKnown RBP20.06■□□□□ 0.8
CPSF1-208ENST00000532560 STK32BQ9NY57 414 aa20.06■□□□□ 0.8
CPSF1-208ENST00000532560 CCNL1Q9UK58 526 aaPredicted RBP20.06■□□□□ 0.8
CPSF1-208ENST00000532560 MAP3K5Q99683 1374 aa20.06■□□□□ 0.8
CPSF1-208ENST00000532560 CABP4P57796 275 aa20.05■□□□□ 0.8
CPSF1-208ENST00000532560 PHACTR3Q96KR7 559 aa20.05■□□□□ 0.8
CPSF1-208ENST00000532560 C5P01031 1676 aa20.04■□□□□ 0.8
CPSF1-208ENST00000532560 CASZ1Q86V15 1759 aa20.04■□□□□ 0.8
CPSF1-208ENST00000532560 RNMTO43148 476 aaKnown RBP20.04■□□□□ 0.8
CPSF1-208ENST00000532560 SLC15A2Q16348 729 aa20.04■□□□□ 0.8
CPSF1-208ENST00000532560 ASAP1Q9ULH1 1129 aa20.04■□□□□ 0.8
CPSF1-208ENST00000532560 LRP5O75197 1615 aa20.04■□□□□ 0.8
CPSF1-208ENST00000532560 ATG3Q9NT62 314 aa20.03■□□□□ 0.8
CPSF1-208ENST00000532560 TAF1LQ8IZX4 1826 aa20.03■□□□□ 0.8
CPSF1-208ENST00000532560 QSER1Q2KHR3 1735 aa20.02■□□□□ 0.8
CPSF1-208ENST00000532560 GNAT3A8MTJ3 354 aa20.02■□□□□ 0.8
CPSF1-208ENST00000532560 HMGB2P26583 209 aaKnown RBP20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms