RNA–Protein interactions for RNA: ENST00000528865.5

CSTF3-208, Transcript of cleavage stimulation factor subunit 3, human

TSL 5

Gene CSTF3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSTF3-208	ENST00000528865	TNPO1	Q92973	898 aa	Known RBP	10.41	□□□□□ -0.74
CSTF3-208	ENST00000528865	ESF1	Q9H501	851 aa	Known RBP	10.41	□□□□□ -0.74
CSTF3-208	ENST00000528865	RGPD1	P0DJD0	1748 aa		10.41	□□□□□ -0.74
CSTF3-208	ENST00000528865	ITSN1	Q15811	1721 aa		10.41	□□□□□ -0.74
CSTF3-208	ENST00000528865	USP6	P35125	1406 aa		10.41	□□□□□ -0.74
CSTF3-208	ENST00000528865	ATP10D	Q9P241	1426 aa		10.41	□□□□□ -0.74
CSTF3-208	ENST00000528865	ARHGEF10	O15013	1369 aa		10.4	□□□□□ -0.74
CSTF3-208	ENST00000528865	TTC21A	Q8NDW8	1320 aa		10.4	□□□□□ -0.74
CSTF3-208	ENST00000528865	HTATSF1	O43719	755 aa	Known RBP	10.4	□□□□□ -0.74
CSTF3-208	ENST00000528865	HSP90AB1	P08238	724 aa	Known RBP	10.4	□□□□□ -0.74
CSTF3-208	ENST00000528865	SKOR2	Q2VWA4	1001 aa	Predicted RBP	10.4	□□□□□ -0.74
CSTF3-208	ENST00000528865	CEP85	Q6P2H3	762 aa		10.4	□□□□□ -0.74
CSTF3-208	ENST00000528865	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	10.4	□□□□□ -0.74
CSTF3-208	ENST00000528865	TOPAZ1	Q8N9V7	1692 aa		10.4	□□□□□ -0.74
CSTF3-208	ENST00000528865	RTL1	A6NKG5	1358 aa		10.39	□□□□□ -0.75
CSTF3-208	ENST00000528865	TSPOAP1	O95153	1857 aa		10.39	□□□□□ -0.75
CSTF3-208	ENST00000528865	MRE11	P49959	708 aa		10.39	□□□□□ -0.75
CSTF3-208	ENST00000528865	RABEP1	Q15276	862 aa		10.39	□□□□□ -0.75
CSTF3-208	ENST00000528865	GBP4	Q96PP9	640 aa		10.39	□□□□□ -0.75
CSTF3-208	ENST00000528865	USP26	Q9BXU7	913 aa		10.39	□□□□□ -0.75
CSTF3-208	ENST00000528865	OSBPL3	Q9H4L5	887 aa		10.39	□□□□□ -0.75
CSTF3-208	ENST00000528865	UBR1	Q8IWV7	1749 aa		10.38	□□□□□ -0.75
CSTF3-208	ENST00000528865	NALCN	Q8IZF0	1738 aa		10.38	□□□□□ -0.75
CSTF3-208	ENST00000528865	CD2BP2	O95400	341 aa	Known RBP	10.38	□□□□□ -0.75
CSTF3-208	ENST00000528865	HSP90AB2P	Q58FF8	381 aa		10.38	□□□□□ -0.75
CSTF3-208	ENST00000528865	TBX22	Q9Y458	520 aa		10.38	□□□□□ -0.75
CSTF3-208	ENST00000528865	PEAK1	Q9H792	1746 aa		10.38	□□□□□ -0.75
CSTF3-208	ENST00000528865	KDR	P35968	1356 aa		10.38	□□□□□ -0.75
CSTF3-208	ENST00000528865	SOS1	Q07889	1333 aa	Predicted RBP	10.37	□□□□□ -0.75
CSTF3-208	ENST00000528865	LTK	P29376	864 aa		10.37	□□□□□ -0.75
CSTF3-208	ENST00000528865	CCT4	P50991	539 aa	Known RBP	10.37	□□□□□ -0.75
CSTF3-208	ENST00000528865	KRT24	Q2M2I5	525 aa		10.37	□□□□□ -0.75
CSTF3-208	ENST00000528865	MCM10	Q7L590	875 aa		10.37	□□□□□ -0.75
CSTF3-208	ENST00000528865	C16orf71	Q8IYS4	520 aa	Predicted RBP	10.37	□□□□□ -0.75
CSTF3-208	ENST00000528865	PTPRU	Q92729	1446 aa		10.37	□□□□□ -0.75
CSTF3-208	ENST00000528865	BABAM1	Q9NWV8	329 aa		10.37	□□□□□ -0.75
CSTF3-208	ENST00000528865	SBNO1	A3KN83	1393 aa		10.37	□□□□□ -0.75
CSTF3-208	ENST00000528865	MTHFSD	Q2M296	383 aa	Known RBP	10.36	□□□□□ -0.75
CSTF3-208	ENST00000528865	GAS2L2	Q8NHY3	880 aa		10.36	□□□□□ -0.75
CSTF3-208	ENST00000528865	RBM42	Q9BTD8	480 aa	Known RBP	10.36	□□□□□ -0.75
CSTF3-208	ENST00000528865	MAP3K19	Q56UN5	1328 aa		10.35	□□□□□ -0.75
CSTF3-208	ENST00000528865	HMMR	O75330	724 aa		10.35	□□□□□ -0.75
CSTF3-208	ENST00000528865	SLC4A2	P04920	1241 aa		10.35	□□□□□ -0.75
CSTF3-208	ENST00000528865	CYP2E1	P05181	493 aa	Predicted RBP	10.35	□□□□□ -0.75
CSTF3-208	ENST00000528865	SDS	P20132	328 aa		10.35	□□□□□ -0.75
CSTF3-208	ENST00000528865	MEIS3	Q99687	375 aa		10.35	□□□□□ -0.75
CSTF3-208	ENST00000528865	RRAGD	Q9NQL2	400 aa	Predicted RBP	10.35	□□□□□ -0.75
CSTF3-208	ENST00000528865	ARHGAP23	Q9P227	1491 aa		10.35	□□□□□ -0.75
CSTF3-208	ENST00000528865	IGSF1	Q8N6C5	1336 aa		10.34	□□□□□ -0.75
CSTF3-208	ENST00000528865	OTUD7A	Q8TE49	926 aa	Predicted RBP	10.34	□□□□□ -0.75
CSTF3-208	ENST00000528865	IL17RA	Q96F46	866 aa		10.34	□□□□□ -0.75
CSTF3-208	ENST00000528865	GRPEL1	Q9HAV7	217 aa		10.34	□□□□□ -0.75
CSTF3-208	ENST00000528865	ANO8	Q9HCE9	1232 aa	Predicted RBP	10.34	□□□□□ -0.75
CSTF3-208	ENST00000528865	CWC22	Q9HCG8	908 aa	Known RBP	10.34	□□□□□ -0.75
CSTF3-208	ENST00000528865	FLT4	P35916	1363 aa		10.34	□□□□□ -0.75
CSTF3-208	ENST00000528865	SALL3	Q9BXA9	1300 aa		10.33	□□□□□ -0.76
CSTF3-208	ENST00000528865	SLIT1	O75093	1534 aa		10.33	□□□□□ -0.76
CSTF3-208	ENST00000528865	NUCB2	P80303	420 aa		10.33	□□□□□ -0.76
CSTF3-208	ENST00000528865	ATP8B2	P98198	1209 aa		10.33	□□□□□ -0.76
CSTF3-208	ENST00000528865	G2E3	Q7L622	706 aa		10.33	□□□□□ -0.76
CSTF3-208	ENST00000528865	RTF1	Q92541	710 aa	Known RBP	10.33	□□□□□ -0.76
CSTF3-208	ENST00000528865	EYA1	Q99502	592 aa		10.33	□□□□□ -0.76
CSTF3-208	ENST00000528865	GZF1	Q9H116	711 aa	Predicted RBP	10.33	□□□□□ -0.76
CSTF3-208	ENST00000528865	AMOTL2	Q9Y2J4	779 aa		10.33	□□□□□ -0.76
CSTF3-208	ENST00000528865	MSH6	P52701	1360 aa		10.33	□□□□□ -0.76
CSTF3-208	ENST00000528865	IBTK	Q9P2D0	1353 aa	Predicted RBP	10.32	□□□□□ -0.76
CSTF3-208	ENST00000528865	FOXO3	O43524	673 aa		10.32	□□□□□ -0.76
CSTF3-208	ENST00000528865	REC8	O95072	547 aa		10.32	□□□□□ -0.76
CSTF3-208	ENST00000528865	BAG4	O95429	457 aa	Known RBP	10.32	□□□□□ -0.76
CSTF3-208	ENST00000528865	SSFA2	P28290	1259 aa		10.32	□□□□□ -0.76
CSTF3-208	ENST00000528865	CASC1	Q6TDU7	716 aa		10.32	□□□□□ -0.76
CSTF3-208	ENST00000528865	TSPYL4	Q9UJ04	414 aa		10.32	□□□□□ -0.76
CSTF3-208	ENST00000528865	EID1	Q9Y6B2	187 aa		10.32	□□□□□ -0.76
CSTF3-208	ENST00000528865	ERC2	O15083	957 aa		10.31	□□□□□ -0.76
CSTF3-208	ENST00000528865	EPB41L2	O43491	1005 aa	Known RBP	10.31	□□□□□ -0.76
CSTF3-208	ENST00000528865	SMARCA5	O60264	1052 aa	Predicted RBP	10.31	□□□□□ -0.76
CSTF3-208	ENST00000528865	GNAI2	P04899	355 aa		10.31	□□□□□ -0.76
CSTF3-208	ENST00000528865	PDE1A	P54750	535 aa		10.31	□□□□□ -0.76
CSTF3-208	ENST00000528865	KLHL40	Q2TBA0	621 aa		10.31	□□□□□ -0.76
CSTF3-208	ENST00000528865	GAS2L3	Q86XJ1	694 aa		10.31	□□□□□ -0.76
CSTF3-208	ENST00000528865	PANK2	Q9BZ23	570 aa		10.31	□□□□□ -0.76
CSTF3-208	ENST00000528865	STAP2	Q9UGK3	403 aa		10.31	□□□□□ -0.76
CSTF3-208	ENST00000528865	ANKAR	Q7Z5J8	1434 aa		10.31	□□□□□ -0.76
CSTF3-208	ENST00000528865	GOLGA6L22	H0YM25	854 aa		10.3	□□□□□ -0.76
CSTF3-208	ENST00000528865	HSP90AA1	P07900	732 aa	Known RBP	10.3	□□□□□ -0.76
CSTF3-208	ENST00000528865	GNAI3	P08754	354 aa		10.3	□□□□□ -0.76
CSTF3-208	ENST00000528865	CLCN1	P35523	988 aa		10.3	□□□□□ -0.76
CSTF3-208	ENST00000528865	CCDC30	Q5VVM6	783 aa		10.3	□□□□□ -0.76
CSTF3-208	ENST00000528865	MIS18A	Q9NYP9	233 aa		10.3	□□□□□ -0.76
CSTF3-208	ENST00000528865	KIF13A	Q9H1H9	1805 aa		10.3	□□□□□ -0.76
CSTF3-208	ENST00000528865	GNAT3	A8MTJ3	354 aa		10.29	□□□□□ -0.76
CSTF3-208	ENST00000528865	ST18	O60284	1047 aa		10.29	□□□□□ -0.76
CSTF3-208	ENST00000528865	AMPH	P49418	695 aa		10.29	□□□□□ -0.76
CSTF3-208	ENST00000528865	SLC26A8	Q96RN1	970 aa		10.29	□□□□□ -0.76
CSTF3-208	ENST00000528865	STK31	Q9BXU1	1019 aa		10.29	□□□□□ -0.76
CSTF3-208	ENST00000528865	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	10.29	□□□□□ -0.76
CSTF3-208	ENST00000528865	AOX1	Q06278	1338 aa		10.29	□□□□□ -0.76
CSTF3-208	ENST00000528865	LRRC37A3	O60309	1634 aa		10.29	□□□□□ -0.76
CSTF3-208	ENST00000528865	USP54	Q70EL1	1684 aa		10.28	□□□□□ -0.76
CSTF3-208	ENST00000528865	DIP2A	Q14689	1571 aa		10.28	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms