RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-208ENST00000528280 HMGB2P26583 209 aaKnown RBP13.16□□□□□ -0.3
CHD7-208ENST00000528280 NBPF6Q5VWK0 638 aa13.16□□□□□ -0.3
CHD7-208ENST00000528280 NBPF4Q96M43 638 aa13.16□□□□□ -0.3
CHD7-208ENST00000528280 PDGFDQ9GZP0 370 aaPredicted RBP13.16□□□□□ -0.3
CHD7-208ENST00000528280 KNSTRNQ9Y448 316 aa13.16□□□□□ -0.3
CHD7-208ENST00000528280 WASHC2AQ641Q2 1341 aa13.15□□□□□ -0.3
CHD7-208ENST00000528280 FAM208AQ9UK61 1670 aaKnown RBP13.15□□□□□ -0.3
CHD7-208ENST00000528280 PPM1GO15355 546 aaPredicted RBP13.15□□□□□ -0.3
CHD7-208ENST00000528280 FHDC1Q9C0D6 1143 aaPredicted RBP13.15□□□□□ -0.3
CHD7-208ENST00000528280 PEAK1Q9H792 1746 aa13.15□□□□□ -0.3
CHD7-208ENST00000528280 WNK3Q9BYP7 1800 aa13.14□□□□□ -0.31
CHD7-208ENST00000528280 ZBTB7AO95365 584 aa13.14□□□□□ -0.31
CHD7-208ENST00000528280 ANO8Q9HCE9 1232 aaPredicted RBP13.14□□□□□ -0.31
CHD7-208ENST00000528280 NSD2O96028 1365 aa13.14□□□□□ -0.31
CHD7-208ENST00000528280 KIF20BQ96Q89 1820 aa13.13□□□□□ -0.31
CHD7-208ENST00000528280 POLKQ9UBT6 870 aa13.13□□□□□ -0.31
CHD7-208ENST00000528280 ATF5Q9Y2D1 282 aaPredicted RBP13.13□□□□□ -0.31
CHD7-208ENST00000528280 TXNRD1Q16881 649 aa13.12□□□□□ -0.31
CHD7-208ENST00000528280 MORC1Q86VD1 984 aa13.12□□□□□ -0.31
CHD7-208ENST00000528280 ACSBG1Q96GR2 724 aa13.12□□□□□ -0.31
CHD7-208ENST00000528280 EMILIN1Q9Y6C2 1016 aa13.12□□□□□ -0.31
CHD7-208ENST00000528280 SHANK3Q9BYB0 1731 aa13.11□□□□□ -0.31
CHD7-208ENST00000528280 PTF1AQ7RTS3 328 aa13.11□□□□□ -0.31
CHD7-208ENST00000528280 PROM2Q8N271 834 aa13.11□□□□□ -0.31
CHD7-208ENST00000528280 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.11□□□□□ -0.315e-6■■■■□ 22.9
CHD7-208ENST00000528280 SPG7Q9UQ90 795 aa13.11□□□□□ -0.31
CHD7-208ENST00000528280 TNNT2P45379 298 aaPredicted RBP13.1□□□□□ -0.31
CHD7-208ENST00000528280 SLC27A3Q5K4L6 730 aa13.1□□□□□ -0.31
CHD7-208ENST00000528280 SGIP1Q9BQI5 828 aa13.1□□□□□ -0.31
CHD7-208ENST00000528280 STK32BQ9NY57 414 aa13.1□□□□□ -0.31
CHD7-208ENST00000528280 PRIM1P49642 420 aaKnown RBP13.09□□□□□ -0.31
CHD7-208ENST00000528280 USHBP1Q8N6Y0 703 aa13.09□□□□□ -0.31
CHD7-208ENST00000528280 KIF7Q2M1P5 1343 aa13.09□□□□□ -0.31
CHD7-208ENST00000528280 PCDH11XQ9BZA7 1347 aa13.09□□□□□ -0.31
CHD7-208ENST00000528280 PCDH11YQ9BZA8 1340 aa13.09□□□□□ -0.31
CHD7-208ENST00000528280 KAT6BQ8WYB5 2073 aa13.08□□□□□ -0.32
CHD7-208ENST00000528280 SYTL4Q96C24 671 aaPredicted RBP13.08□□□□□ -0.32
CHD7-208ENST00000528280 EYA1Q99502 592 aa13.08□□□□□ -0.32
CHD7-208ENST00000528280 MAP3K5Q99683 1374 aa13.07□□□□□ -0.32
CHD7-208ENST00000528280 SLC15A2Q16348 729 aa13.07□□□□□ -0.32
CHD7-208ENST00000528280 MTFR1LQ9H019 292 aa13.07□□□□□ -0.32
CHD7-208ENST00000528280 MAP2P11137 1827 aaKnown RBP13.06□□□□□ -0.32
CHD7-208ENST00000528280 PLEKHG2Q9H7P9 1386 aa13.06□□□□□ -0.32
CHD7-208ENST00000528280 EIF4A2Q14240 407 aaKnown RBP13.05□□□□□ -0.32
CHD7-208ENST00000528280 NKX1-1Q15270 411 aaPredicted RBP13.05□□□□□ -0.32
CHD7-208ENST00000528280 GPR162Q16538 588 aa13.05□□□□□ -0.32
CHD7-208ENST00000528280 AMER1Q5JTC6 1135 aaPredicted RBP13.05□□□□□ -0.32
CHD7-208ENST00000528280 ARXQ96QS3 562 aa13.05□□□□□ -0.32
CHD7-208ENST00000528280 NHSQ6T4R5 1651 aa13.05□□□□□ -0.32
CHD7-208ENST00000528280 MEGF6O75095 1541 aa13.04□□□□□ -0.32
CHD7-208ENST00000528280 PER1O15534 1290 aaPredicted RBP13.04□□□□□ -0.32
CHD7-208ENST00000528280 IFNL2Q8IZJ0 200 aa13.04□□□□□ -0.32
CHD7-208ENST00000528280 SMARCC1Q92922 1105 aaPredicted RBP13.04□□□□□ -0.32
CHD7-208ENST00000528280 RGPD2P0DJD1 1756 aa13.03□□□□□ -0.32
CHD7-208ENST00000528280 CYP27B1O15528 508 aa13.03□□□□□ -0.32
CHD7-208ENST00000528280 AMOTQ4VCS5 1084 aa13.03□□□□□ -0.32
CHD7-208ENST00000528280 PLEKHO1Q53GL0 409 aaPredicted RBP13.03□□□□□ -0.32
CHD7-208ENST00000528280 NCAPD2Q15021 1401 aa13.03□□□□□ -0.32
CHD7-208ENST00000528280 ANKRD26Q9UPS8 1709 aa13.02□□□□□ -0.32
CHD7-208ENST00000528280 HSP90AB1P08238 724 aaKnown RBP13.02□□□□□ -0.33
CHD7-208ENST00000528280 GOLGB1Q14789 3259 aaKnown RBP13.01□□□□□ -0.33
CHD7-208ENST00000528280 HSPA6P17066 643 aa13.01□□□□□ -0.33
CHD7-208ENST00000528280 MPRIPQ6WCQ1 1025 aa13.01□□□□□ -0.33
CHD7-208ENST00000528280 SLC16A10Q8TF71 515 aa13.01□□□□□ -0.33
CHD7-208ENST00000528280 IGSF1Q8N6C5 1336 aa13.01□□□□□ -0.33
CHD7-208ENST00000528280 COL24A1Q17RW2 1714 aa13.01□□□□□ -0.33
CHD7-208ENST00000528280 NPC1L1Q9UHC9 1359 aa13□□□□□ -0.33
CHD7-208ENST00000528280 LRRC4BQ9NT99 713 aa13□□□□□ -0.33
CHD7-208ENST00000528280 CCNL1Q9UK58 526 aaPredicted RBP13□□□□□ -0.33
CHD7-208ENST00000528280 BTAF1O14981 1849 aa12.99□□□□□ -0.33
CHD7-208ENST00000528280 PHKG2P15735 406 aa12.99□□□□□ -0.33
CHD7-208ENST00000528280 MTHFSP49914 203 aa12.99□□□□□ -0.33
CHD7-208ENST00000528280 AKT1S1Q96B36 256 aa12.99□□□□□ -0.33
CHD7-208ENST00000528280 TFCP2L1Q9NZI6 479 aa12.99□□□□□ -0.33
CHD7-208ENST00000528280 ERVV-2B6SEH9 535 aa12.98□□□□□ -0.33
CHD7-208ENST00000528280 IL13P35225 146 aa12.98□□□□□ -0.33
CHD7-208ENST00000528280 CC2D1BQ5T0F9 858 aaKnown RBP12.98□□□□□ -0.33
CHD7-208ENST00000528280 FLAD1Q8NFF5 587 aa12.98□□□□□ -0.33
CHD7-208ENST00000528280 DCAF5Q96JK2 942 aa12.98□□□□□ -0.33
CHD7-208ENST00000528280 TMOD3Q9NYL9 352 aa12.98□□□□□ -0.33
CHD7-208ENST00000528280 C1orf141Q5JVX7 400 aa12.97□□□□□ -0.33
CHD7-208ENST00000528280 SULT6B1Q6IMI4 303 aa12.97□□□□□ -0.33
CHD7-208ENST00000528280 PIGBQ92521 554 aa12.97□□□□□ -0.33
CHD7-208ENST00000528280 DIAPH1O60610 1272 aaKnown RBP12.96□□□□□ -0.33
CHD7-208ENST00000528280 QSER1Q2KHR3 1735 aa12.96□□□□□ -0.34
CHD7-208ENST00000528280 PAPPAQ13219 1627 aa12.95□□□□□ -0.34
CHD7-208ENST00000528280 POLD1P28340 1107 aa12.94□□□□□ -0.34
CHD7-208ENST00000528280 ZNF827Q17R98 1081 aa12.94□□□□□ -0.34
CHD7-208ENST00000528280 ZNF530Q6P9A1 599 aaPredicted RBP12.94□□□□□ -0.34
CHD7-208ENST00000528280 PELP1Q8IZL8 1130 aaKnown RBP12.94□□□□□ -0.34
CHD7-208ENST00000528280 CFAP53Q96M91 514 aa12.94□□□□□ -0.34
CHD7-208ENST00000528280 ATP10DQ9P241 1426 aa12.94□□□□□ -0.34
CHD7-208ENST00000528280 PALLDQ8WX93 1383 aa12.94□□□□□ -0.34
CHD7-208ENST00000528280 PKD1L3Q7Z443 1732 aa12.93□□□□□ -0.34
CHD7-208ENST00000528280 DOT1LQ8TEK3 1739 aa12.93□□□□□ -0.34
CHD7-208ENST00000528280 GRIN3BO60391 1043 aa12.93□□□□□ -0.34
CHD7-208ENST00000528280 KCNQ4P56696 695 aa12.93□□□□□ -0.34
CHD7-208ENST00000528280 CABP4P57796 275 aa12.93□□□□□ -0.34
CHD7-208ENST00000528280 KDRP35968 1356 aa12.93□□□□□ -0.34
CHD7-208ENST00000528280 LOC102724428A0A0B4J2F2 783 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms