RNA–Protein interactions for RNA: ENST00000513769.5

TPM3-221, Transcript of tropomyosin 3, humanhuman

TSL 3

Gene TPM3, Length 539 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-221ENST00000513769 KCNH5Q8NCM2 988 aa13.02□□□□□ -0.33
TPM3-221ENST00000513769 FBXO22Q8NEZ5 403 aa13.02□□□□□ -0.33
TPM3-221ENST00000513769 MARVELD3Q96A59 401 aa13.02□□□□□ -0.33
TPM3-221ENST00000513769 RBM33Q96EV2 1170 aaKnown RBP13.02□□□□□ -0.33
TPM3-221ENST00000513769 U2AF1L5P0DN76 240 aaPredicted RBP13.01□□□□□ -0.33
TPM3-221ENST00000513769 U2AF1Q01081 240 aaKnown RBP eCLIP13.01□□□□□ -0.33
TPM3-221ENST00000513769 CDAN1Q8IWY9 1227 aa13.01□□□□□ -0.33
TPM3-221ENST00000513769 MSH6P52701 1360 aa13.01□□□□□ -0.33
TPM3-221ENST00000513769 KIF20BQ96Q89 1820 aa13.01□□□□□ -0.33
TPM3-221ENST00000513769 SMG6Q86US8 1419 aaKnown RBP13□□□□□ -0.33
TPM3-221ENST00000513769 NEFMP07197 916 aa13□□□□□ -0.33
TPM3-221ENST00000513769 ERICH6BQ5W0A0 696 aa13□□□□□ -0.33
TPM3-221ENST00000513769 WDR63Q8IWG1 891 aa13□□□□□ -0.33
TPM3-221ENST00000513769 MFRPQ9BY79 579 aa13□□□□□ -0.33
TPM3-221ENST00000513769 APAF1O14727 1248 aa12.99□□□□□ -0.33
TPM3-221ENST00000513769 IL13P35225 146 aa12.99□□□□□ -0.33
TPM3-221ENST00000513769 KRT28Q7Z3Y7 464 aa12.99□□□□□ -0.33
TPM3-221ENST00000513769 ORAI2Q96SN7 254 aa12.99□□□□□ -0.33
TPM3-221ENST00000513769 GTF3C3Q9Y5Q9 886 aa12.99□□□□□ -0.33
TPM3-221ENST00000513769 XIRP1Q702N8 1843 aaKnown RBP12.99□□□□□ -0.33
TPM3-221ENST00000513769 RGPD8O14715 1765 aaPredicted RBP12.99□□□□□ -0.33
TPM3-221ENST00000513769 C1orf167Q5SNV9 1468 aa12.98□□□□□ -0.33
TPM3-221ENST00000513769 OVOS2A0A0J9YW53 1432 aa12.98□□□□□ -0.33
TPM3-221ENST00000513769 OVOS2Q6IE36 1432 aa12.98□□□□□ -0.33
TPM3-221ENST00000513769 ZNF521Q96K83 1311 aa12.98□□□□□ -0.33
TPM3-221ENST00000513769 MAP2P11137 1827 aaKnown RBP12.98□□□□□ -0.33
TPM3-221ENST00000513769 FOXO3O43524 673 aa12.98□□□□□ -0.33
TPM3-221ENST00000513769 PLEKHF1Q96S99 279 aa12.98□□□□□ -0.33
TPM3-221ENST00000513769 NALCNQ8IZF0 1738 aa12.98□□□□□ -0.33
TPM3-221ENST00000513769 MST1RQ04912 1400 aa12.97□□□□□ -0.33
TPM3-221ENST00000513769 TMEM92Q6UXU6 159 aa12.97□□□□□ -0.33
TPM3-221ENST00000513769 TRMT2AQ8IZ69 625 aaKnown RBP12.97□□□□□ -0.33
TPM3-221ENST00000513769 TCP11L2Q8N4U5 519 aa12.97□□□□□ -0.33
TPM3-221ENST00000513769 SLAIN2Q9P270 581 aa12.97□□□□□ -0.33
TPM3-221ENST00000513769 NPHP3Q7Z494 1330 aa12.96□□□□□ -0.33
TPM3-221ENST00000513769 U2SURPO15042 1029 aaKnown RBP12.96□□□□□ -0.33
TPM3-221ENST00000513769 PPM1GO15355 546 aaPredicted RBP12.96□□□□□ -0.33
TPM3-221ENST00000513769 HOXB3P14651 431 aaPredicted RBP12.96□□□□□ -0.33
TPM3-221ENST00000513769 NRKQ7Z2Y5 1582 aa12.95□□□□□ -0.34
TPM3-221ENST00000513769 E9PSI1 815 aa12.95□□□□□ -0.34
TPM3-221ENST00000513769 EMILIN1Q9Y6C2 1016 aa12.95□□□□□ -0.34
TPM3-221ENST00000513769 CDK12Q9NYV4 1490 aaPredicted RBP12.95□□□□□ -0.34
TPM3-221ENST00000513769 SBNO1A3KN83 1393 aa12.94□□□□□ -0.34
TPM3-221ENST00000513769 ROBO1Q9Y6N7 1651 aa12.94□□□□□ -0.34
TPM3-221ENST00000513769 NEFLP07196 543 aa12.94□□□□□ -0.34
TPM3-221ENST00000513769 FBLN1P23142 703 aa12.94□□□□□ -0.34
TPM3-221ENST00000513769 AMPHP49418 695 aa12.94□□□□□ -0.34
TPM3-221ENST00000513769 EMP3P54852 163 aa12.94□□□□□ -0.34
TPM3-221ENST00000513769 SLFN5Q08AF3 891 aa12.94□□□□□ -0.34
TPM3-221ENST00000513769 WWC1Q8IX03 1113 aa12.94□□□□□ -0.34
TPM3-221ENST00000513769 COL3A1P02461 1466 aaPredicted RBP12.93□□□□□ -0.34
TPM3-221ENST00000513769 RRS1Q15050 365 aaKnown RBP12.93□□□□□ -0.34
TPM3-221ENST00000513769 IP6K1Q92551 441 aa12.93□□□□□ -0.34
TPM3-221ENST00000513769 SUPT16HQ9Y5B9 1047 aaKnown RBP12.93□□□□□ -0.34
TPM3-221ENST00000513769 FLT4P35916 1363 aa12.93□□□□□ -0.34
TPM3-221ENST00000513769 JCADQ9P266 1359 aa12.93□□□□□ -0.34
TPM3-221ENST00000513769 KIF1AQ12756 1690 aa12.93□□□□□ -0.34
TPM3-221ENST00000513769 MAPK8IP3Q9UPT6 1336 aa12.92□□□□□ -0.34
TPM3-221ENST00000513769 GCP02774 474 aa12.92□□□□□ -0.34
TPM3-221ENST00000513769 TMPOP42166 694 aaKnown RBP12.92□□□□□ -0.34
TPM3-221ENST00000513769 CCDC146Q8IYE0 955 aa12.92□□□□□ -0.34
TPM3-221ENST00000513769 RSPH6AQ9H0K4 717 aa12.92□□□□□ -0.34
TPM3-221ENST00000513769 USP54Q70EL1 1684 aa12.92□□□□□ -0.34
TPM3-221ENST00000513769 IL16Q14005 1332 aa12.91□□□□□ -0.34
TPM3-221ENST00000513769 MAP3K19Q56UN5 1328 aa12.91□□□□□ -0.34
TPM3-221ENST00000513769 RNF123Q5XPI4 1314 aa12.91□□□□□ -0.34
TPM3-221ENST00000513769 CALD1Q05682 793 aaKnown RBP12.91□□□□□ -0.34
TPM3-221ENST00000513769 DOK7Q18PE1 504 aa12.91□□□□□ -0.34
TPM3-221ENST00000513769 MEX3CQ5U5Q3 659 aaKnown RBP12.91□□□□□ -0.34
TPM3-221ENST00000513769 SALL2Q9Y467 1007 aaPredicted RBP12.91□□□□□ -0.34
TPM3-221ENST00000513769 SHPRHQ149N8 1683 aa12.91□□□□□ -0.34
TPM3-221ENST00000513769 EIF4A2Q14240 407 aaKnown RBP12.9□□□□□ -0.34
TPM3-221ENST00000513769 HSP90AB2PQ58FF8 381 aa12.9□□□□□ -0.34
TPM3-221ENST00000513769 DUSP27Q5VZP5 1158 aa12.9□□□□□ -0.34
TPM3-221ENST00000513769 ZNF710Q8N1W2 664 aa12.9□□□□□ -0.34
TPM3-221ENST00000513769 CT47B1P0C2W7 299 aaPredicted RBP12.89□□□□□ -0.35
TPM3-221ENST00000513769 HOXC9P31274 260 aa12.89□□□□□ -0.35
TPM3-221ENST00000513769 RIPK4P57078 832 aa12.89□□□□□ -0.35
TPM3-221ENST00000513769 LMOD3Q0VAK6 560 aa12.89□□□□□ -0.35
TPM3-221ENST00000513769 ARHGEF25Q86VW2 580 aa12.89□□□□□ -0.35
TPM3-221ENST00000513769 RTL1A6NKG5 1358 aa12.89□□□□□ -0.35
TPM3-221ENST00000513769 PHLPP1O60346 1717 aa12.88□□□□□ -0.35
TPM3-221ENST00000513769 ZNF772Q68DY9 489 aaPredicted RBP12.88□□□□□ -0.35
TPM3-221ENST00000513769 BRINP3Q76B58 766 aa12.88□□□□□ -0.35
TPM3-221ENST00000513769 CDCA7LQ96GN5 454 aa12.88□□□□□ -0.35
TPM3-221ENST00000513769 MYH16Q9H6N6 1097 aa12.88□□□□□ -0.35
TPM3-221ENST00000513769 RCAN3Q9UKA8 241 aa12.88□□□□□ -0.35
TPM3-221ENST00000513769 USP19O94966 1318 aa12.88□□□□□ -0.35
TPM3-221ENST00000513769 SOS2Q07890 1332 aaPredicted RBP12.88□□□□□ -0.35
TPM3-221ENST00000513769 ARHGEF10O15013 1369 aa12.87□□□□□ -0.35
TPM3-221ENST00000513769 HTATSF1O43719 755 aaKnown RBP12.87□□□□□ -0.35
TPM3-221ENST00000513769 PRKAR2BP31323 418 aa12.87□□□□□ -0.35
TPM3-221ENST00000513769 NFE2L2Q16236 605 aa12.87□□□□□ -0.35
TPM3-221ENST00000513769 SPATA31A6Q5VVP1 1343 aa12.87□□□□□ -0.35
TPM3-221ENST00000513769 SPATA31A3Q5VYP0 1347 aa12.87□□□□□ -0.35
TPM3-221ENST00000513769 PIK3C2AO00443 1686 aa12.86□□□□□ -0.35
TPM3-221ENST00000513769 SULT6B1Q6IMI4 303 aa12.86□□□□□ -0.35
TPM3-221ENST00000513769 FAM205CA6NFA0 338 aa12.85□□□□□ -0.35
TPM3-221ENST00000513769 NEUROD2Q15784 382 aa12.85□□□□□ -0.35
TPM3-221ENST00000513769 NUTM2GQ5VZR2 741 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms