RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 PTPRCP08575 1304 aa10.08□□□□□ -0.8
LIMCH1-216ENST00000512820 TRIM5Q9C035 493 aa10.08□□□□□ -0.8
LIMCH1-216ENST00000512820 CEP170Q5SW79 1584 aa10.08□□□□□ -0.8
LIMCH1-216ENST00000512820 RIC3Q7Z5B4 369 aa10.08□□□□□ -0.8
LIMCH1-216ENST00000512820 WDR7Q9Y4E6 1490 aa10.08□□□□□ -0.8
LIMCH1-216ENST00000512820 ZBTB7BO15156 539 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-216ENST00000512820 AEBP1Q8IUX7 1158 aa10.08□□□□□ -0.8
LIMCH1-216ENST00000512820 A0A1W2PP64 1363 aa10.08□□□□□ -0.8
LIMCH1-216ENST00000512820 CCDC192P0DO97 292 aa10.07□□□□□ -0.8
LIMCH1-216ENST00000512820 ANKRD44Q8N8A2 993 aa10.07□□□□□ -0.8
LIMCH1-216ENST00000512820 PHACTR3Q96KR7 559 aa10.07□□□□□ -0.8
LIMCH1-216ENST00000512820 PTPRTO14522 1441 aa10.07□□□□□ -0.8
LIMCH1-216ENST00000512820 CCDC73Q6ZRK6 1079 aa10.07□□□□□ -0.8
LIMCH1-216ENST00000512820 MEIS3Q99687 375 aa10.07□□□□□ -0.8
LIMCH1-216ENST00000512820 TSHZ3Q63HK5 1081 aa10.07□□□□□ -0.8
LIMCH1-216ENST00000512820 ERC1Q8IUD2 1116 aa10.07□□□□□ -0.8
LIMCH1-216ENST00000512820 FBXW7Q969H0 707 aa10.07□□□□□ -0.8
LIMCH1-216ENST00000512820 PKNOX2Q96KN3 472 aa10.07□□□□□ -0.8
LIMCH1-216ENST00000512820 PDRG1Q9NUG6 133 aa10.07□□□□□ -0.8
LIMCH1-216ENST00000512820 HIP1O00291 1037 aa10.06□□□□□ -0.8
LIMCH1-216ENST00000512820 TTC5Q8N0Z6 440 aa10.06□□□□□ -0.8
LIMCH1-216ENST00000512820 JAKMIP1Q96N16 626 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-216ENST00000512820 DCTPP1Q9H773 170 aa10.06□□□□□ -0.8
LIMCH1-216ENST00000512820 PLA2R1Q13018 1463 aa10.06□□□□□ -0.8
LIMCH1-216ENST00000512820 LARP1BQ659C4 914 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-216ENST00000512820 GDPD2Q9HCC8 539 aa10.06□□□□□ -0.8
LIMCH1-216ENST00000512820 PLEKHM2Q8IWE5 1019 aa10.06□□□□□ -0.8
LIMCH1-216ENST00000512820 ABCC2Q92887 1545 aa10.06□□□□□ -0.8
LIMCH1-216ENST00000512820 KRT85P78386 507 aa10.06□□□□□ -0.8
LIMCH1-216ENST00000512820 UBE2Q2Q8WVN8 375 aa10.06□□□□□ -0.8
LIMCH1-216ENST00000512820 TMX3Q96JJ7 454 aa10.06□□□□□ -0.8
LIMCH1-216ENST00000512820 KDM5DQ9BY66 1539 aa10.05□□□□□ -0.8
LIMCH1-216ENST00000512820 GNAT3A8MTJ3 354 aa10.05□□□□□ -0.8
LIMCH1-216ENST00000512820 NCBP3Q53F19 620 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-216ENST00000512820 LRRFIP2Q9Y608 721 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-216ENST00000512820 CASTP20810 708 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-216ENST00000512820 ZSCAN31Q96LW9 406 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-216ENST00000512820 SLC26A8Q96RN1 970 aa10.05□□□□□ -0.8
LIMCH1-216ENST00000512820 ZNF771Q7L3S4 317 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-216ENST00000512820 KIF1BPQ96EK5 621 aa10.05□□□□□ -0.8
LIMCH1-216ENST00000512820 PRDM15P57071 1507 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 CPLX1O14810 134 aa10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 RAB11FIP3O75154 756 aa10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 FLIIQ13045 1269 aa10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 BCL11BQ9C0K0 894 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 PDE1AP54750 535 aa10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 STK3Q13188 491 aa10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 TPD52L1Q16890 204 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 PLEKHO1Q53GL0 409 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 CCDC183Q5T5S1 534 aa10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 TNMDQ9H2S6 317 aa10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 LRSAM1Q6UWE0 723 aa10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 AACSQ86V21 672 aa10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 CCDC34Q96HJ3 373 aa10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 NEUROD6Q96NK8 337 aa10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 ZMYM3Q14202 1370 aa10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 CCDC83Q8IWF9 413 aa10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 PDCL3Q9H2J4 239 aa10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 ZRANB1Q9UGI0 708 aa10.04□□□□□ -0.8
LIMCH1-216ENST00000512820 ANKRD1Q15327 319 aa10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 LRRFIP1Q32MZ4 808 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 ZGPATQ8N5A5 531 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 SDF4Q9BRK5 362 aa10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 USP26Q9BXU7 913 aa10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 TOMM22Q9NS69 142 aa10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 USP25Q9UHP3 1055 aa10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 PRIM1P49642 420 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 CEBPZQ03701 1054 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 BLOC1S2Q6QNY1 142 aa10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 SIL1Q9H173 461 aa10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 ABCA8O94911 1581 aa10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 TRHP20396 242 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 MCM5P33992 734 aa10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 CEP85Q6P2H3 762 aa10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 HOMER1Q86YM7 354 aa10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 DNAJC2Q99543 621 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 LARP6Q9BRS8 491 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 SAMD9LQ8IVG5 1584 aa10.03□□□□□ -0.8
LIMCH1-216ENST00000512820 GLRX3O76003 335 aaKnown RBP10.02□□□□□ -0.8
LIMCH1-216ENST00000512820 KRT24Q2M2I5 525 aa10.02□□□□□ -0.8
LIMCH1-216ENST00000512820 PRPF40BQ6NWY9 871 aaKnown RBP10.02□□□□□ -0.8
LIMCH1-216ENST00000512820 ZNF530Q6P9A1 599 aaPredicted RBP10.02□□□□□ -0.8
LIMCH1-216ENST00000512820 NUP62CLQ9H1M0 184 aa10.02□□□□□ -0.8
LIMCH1-216ENST00000512820 TAF7Q15545 349 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-216ENST00000512820 CPLX2Q6PUV4 134 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-216ENST00000512820 LIMCH1Q9UPQ0 1083 aa10.02□□□□□ -0.81
LIMCH1-216ENST00000512820 ATP10AO60312 1499 aa10.02□□□□□ -0.81
LIMCH1-216ENST00000512820 FERMT3Q86UX7 667 aa10.02□□□□□ -0.81
LIMCH1-216ENST00000512820 RAPGEF4Q8WZA2 1011 aa10.02□□□□□ -0.81
LIMCH1-216ENST00000512820 ANTXR1Q9H6X2 564 aa10.02□□□□□ -0.81
LIMCH1-216ENST00000512820 ERVK-7P63135 1459 aa10.02□□□□□ -0.81
LIMCH1-216ENST00000512820 KINO60870 393 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-216ENST00000512820 DDX54Q8TDD1 881 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-216ENST00000512820 SPATA32Q96LK8 384 aa10.02□□□□□ -0.81
LIMCH1-216ENST00000512820 ZNF518AQ6AHZ1 1483 aa10.02□□□□□ -0.81
LIMCH1-216ENST00000512820 SYNMO15061 1565 aa10.01□□□□□ -0.81
LIMCH1-216ENST00000512820 ASXL2Q76L83 1435 aa10.01□□□□□ -0.81
LIMCH1-216ENST00000512820 ESYT1Q9BSJ8 1104 aa10.01□□□□□ -0.81
LIMCH1-216ENST00000512820 NAT10Q9H0A0 1025 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-216ENST00000512820 PPP6R1Q9UPN7 881 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 129.4 ms