RNA–Protein interactions for RNA: ENST00000496711.5

GARNL3-220, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 1 (best)

Gene GARNL3, Length 1,859 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-220ENST00000496711 HOXC9P31274 260 aa16.48■□□□□ 0.23
GARNL3-220ENST00000496711 ABTB2Q8N961 1025 aa16.48■□□□□ 0.23
GARNL3-220ENST00000496711 MTHFSDQ2M296 383 aaKnown RBP16.47■□□□□ 0.23
GARNL3-220ENST00000496711 GAS2L2Q8NHY3 880 aa16.47■□□□□ 0.23
GARNL3-220ENST00000496711 SEC24BO95487 1268 aa16.46■□□□□ 0.23
GARNL3-220ENST00000496711 NUTM2GQ5VZR2 741 aa16.46■□□□□ 0.23
GARNL3-220ENST00000496711 RGS12O14924 1447 aa16.46■□□□□ 0.23
GARNL3-220ENST00000496711 RTF1Q92541 710 aaKnown RBP16.46■□□□□ 0.22
GARNL3-220ENST00000496711 UPF2Q9HAU5 1272 aaKnown RBP16.46■□□□□ 0.22
GARNL3-220ENST00000496711 NUCB1Q02818 461 aa16.45■□□□□ 0.22
GARNL3-220ENST00000496711 RTL5Q5HYW3 569 aaPredicted RBP16.45■□□□□ 0.22
GARNL3-220ENST00000496711 CACNA1FO60840 1977 aa16.44■□□□□ 0.22
GARNL3-220ENST00000496711 FOXO3O43524 673 aa16.44■□□□□ 0.22
GARNL3-220ENST00000496711 KRT24Q2M2I5 525 aa16.44■□□□□ 0.22
GARNL3-220ENST00000496711 GCC1Q96CN9 775 aa16.44■□□□□ 0.22
GARNL3-220ENST00000496711 KIF1AQ12756 1690 aa16.43■□□□□ 0.22
GARNL3-220ENST00000496711 HTATSF1O43719 755 aaKnown RBP16.43■□□□□ 0.22
GARNL3-220ENST00000496711 C14orf37Q86TY3 774 aa16.43■□□□□ 0.22
GARNL3-220ENST00000496711 C1orf115Q9H7X2 142 aa16.43■□□□□ 0.22
GARNL3-220ENST00000496711 RGPD2P0DJD1 1756 aa16.43■□□□□ 0.22
GARNL3-220ENST00000496711 N4BP2Q86UW6 1770 aaPredicted RBP16.43■□□□□ 0.22
GARNL3-220ENST00000496711 PTPRCP08575 1304 aa16.42■□□□□ 0.22
GARNL3-220ENST00000496711 SLC4A3P48751 1232 aa16.42■□□□□ 0.22
GARNL3-220ENST00000496711 INTS3Q68E01 1043 aaKnown RBP16.42■□□□□ 0.22
GARNL3-220ENST00000496711 CHD1LQ86WJ1 897 aa16.42■□□□□ 0.22
GARNL3-220ENST00000496711 TRPM3Q9HCF6 1732 aaPredicted RBP16.42■□□□□ 0.22
GARNL3-220ENST00000496711 TSPYL4Q9UJ04 414 aa16.42■□□□□ 0.22
GARNL3-220ENST00000496711 RBM33Q96EV2 1170 aaKnown RBP16.41■□□□□ 0.22
GARNL3-220ENST00000496711 MAP3K5Q99683 1374 aa16.41■□□□□ 0.22
GARNL3-220ENST00000496711 TBC1D32Q96NH3 1257 aa16.4■□□□□ 0.22
GARNL3-220ENST00000496711 SLIT3O75094 1523 aa16.4■□□□□ 0.22
GARNL3-220ENST00000496711 ESCO1Q5FWF5 840 aa16.39■□□□□ 0.22
GARNL3-220ENST00000496711 LNPKQ9C0E8 428 aa16.39■□□□□ 0.22
GARNL3-220ENST00000496711 GNAT3A8MTJ3 354 aa16.39■□□□□ 0.21
GARNL3-220ENST00000496711 MSH6P52701 1360 aa16.39■□□□□ 0.21
GARNL3-220ENST00000496711 LMO7Q8WWI1 1683 aa16.39■□□□□ 0.21
GARNL3-220ENST00000496711 SIRT2Q8IXJ6 389 aa16.38■□□□□ 0.21
GARNL3-220ENST00000496711 USP35Q9P2H5 1018 aa16.38■□□□□ 0.21
GARNL3-220ENST00000496711 ATP10DQ9P241 1426 aa16.38■□□□□ 0.21
GARNL3-220ENST00000496711 PSME1Q06323 249 aa16.37■□□□□ 0.21
GARNL3-220ENST00000496711 BECN1Q14457 450 aa16.37■□□□□ 0.21
GARNL3-220ENST00000496711 IP6K1Q92551 441 aa16.37■□□□□ 0.21
GARNL3-220ENST00000496711 LTV1Q96GA3 475 aaPredicted RBP16.37■□□□□ 0.21
GARNL3-220ENST00000496711 MIS18AQ9NYP9 233 aa16.37■□□□□ 0.21
GARNL3-220ENST00000496711 KDM3BQ7LBC6 1761 aa16.37■□□□□ 0.21
GARNL3-220ENST00000496711 MED1Q15648 1581 aaPredicted RBP16.37■□□□□ 0.21
GARNL3-220ENST00000496711 KCNH5Q8NCM2 988 aa16.37■□□□□ 0.21
GARNL3-220ENST00000496711 CAMTA1Q9Y6Y1 1673 aa16.36■□□□□ 0.21
GARNL3-220ENST00000496711 ANKRD45Q5TZF3 282 aa16.36■□□□□ 0.21
GARNL3-220ENST00000496711 SLC4A2P04920 1241 aa16.35■□□□□ 0.21
GARNL3-220ENST00000496711 BMP2KLQ5H9B9 411 aa16.34■□□□□ 0.21
GARNL3-220ENST00000496711 BABAM1Q9NWV8 329 aa16.34■□□□□ 0.21
GARNL3-220ENST00000496711 SOS1Q07889 1333 aaPredicted RBP16.34■□□□□ 0.21
GARNL3-220ENST00000496711 ALS2Q96Q42 1657 aa16.34■□□□□ 0.21
GARNL3-220ENST00000496711 USHBP1Q8N6Y0 703 aa16.33■□□□□ 0.21
GARNL3-220ENST00000496711 MFAP1P55081 439 aaKnown RBP16.33■□□□□ 0.2
GARNL3-220ENST00000496711 ANKRD44Q8N8A2 993 aa16.33■□□□□ 0.2
GARNL3-220ENST00000496711 RPAP2Q8IXW5 612 aaPredicted RBP16.32■□□□□ 0.2
GARNL3-220ENST00000496711 STK31Q9BXU1 1019 aa16.32■□□□□ 0.2
GARNL3-220ENST00000496711 RGPD5Q99666 1765 aa16.31■□□□□ 0.2
GARNL3-220ENST00000496711 IL17REQ8NFR9 667 aa16.31■□□□□ 0.2
GARNL3-220ENST00000496711 ORAI2Q96SN7 254 aa16.31■□□□□ 0.2
GARNL3-220ENST00000496711 C22orf23Q9BZE7 217 aa16.31■□□□□ 0.2
GARNL3-220ENST00000496711 NCAPD2Q15021 1401 aa16.31■□□□□ 0.2
GARNL3-220ENST00000496711 DEKP35659 375 aaKnown RBP16.31■□□□□ 0.2
GARNL3-220ENST00000496711 CEP85Q6P2H3 762 aa16.31■□□□□ 0.2
GARNL3-220ENST00000496711 DCTPP1Q9H773 170 aa16.31■□□□□ 0.2
GARNL3-220ENST00000496711 CEMIPQ8WUJ3 1361 aa16.31■□□□□ 0.2
GARNL3-220ENST00000496711 PXDNLA1KZ92 1463 aa16.31■□□□□ 0.2
GARNL3-220ENST00000496711 C1orf167Q5SNV9 1468 aa16.31■□□□□ 0.2
GARNL3-220ENST00000496711 STRCP1A6NGW2 1772 aa16.3■□□□□ 0.2
GARNL3-220ENST00000496711 CCT4P50991 539 aaKnown RBP16.3■□□□□ 0.2
GARNL3-220ENST00000496711 TAF7Q15545 349 aaPredicted RBP16.3■□□□□ 0.2
GARNL3-220ENST00000496711 CCDC30Q5VVM6 783 aa16.3■□□□□ 0.2
GARNL3-220ENST00000496711 NBPF6Q5VWK0 638 aa16.3■□□□□ 0.2
GARNL3-220ENST00000496711 G2E3Q7L622 706 aa16.3■□□□□ 0.2
GARNL3-220ENST00000496711 NBPF4Q96M43 638 aa16.3■□□□□ 0.2
GARNL3-220ENST00000496711 MEIS3Q99687 375 aa16.29■□□□□ 0.2
GARNL3-220ENST00000496711 MST1RQ04912 1400 aa16.29■□□□□ 0.2
GARNL3-220ENST00000496711 ZBTB7CA1YPR0 619 aa16.29■□□□□ 0.2
GARNL3-220ENST00000496711 NFKBIBQ15653 356 aa16.29■□□□□ 0.2
GARNL3-220ENST00000496711 PROSER2Q86WR7 435 aaPredicted RBP16.29■□□□□ 0.2
GARNL3-220ENST00000496711 GCP02774 474 aa16.27■□□□□ 0.2
GARNL3-220ENST00000496711 XPCQ01831 940 aaPredicted RBP16.27■□□□□ 0.2
GARNL3-220ENST00000496711 SIPA1L3O60292 1781 aaPredicted RBP16.27■□□□□ 0.2
GARNL3-220ENST00000496711 F6X3S4 739 aa16.27■□□□□ 0.19
GARNL3-220ENST00000496711 FLIIQ13045 1269 aa16.27■□□□□ 0.19
GARNL3-220ENST00000496711 SLC4A10Q6U841 1118 aa16.27■□□□□ 0.19
GARNL3-220ENST00000496711 ARHGEF25Q86VW2 580 aa16.27■□□□□ 0.19
GARNL3-220ENST00000496711 TBC1D2Q9BYX2 928 aa16.26■□□□□ 0.19
GARNL3-220ENST00000496711 OVOS2A0A0G2JMS6 1433 aa16.26■□□□□ 0.19
GARNL3-220ENST00000496711 CRYBG1Q9Y4K1 1723 aa16.25■□□□□ 0.19
GARNL3-220ENST00000496711 HMMRO75330 724 aa16.25■□□□□ 0.19
GARNL3-220ENST00000496711 DCCP43146 1447 aa16.25■□□□□ 0.19
GARNL3-220ENST00000496711 ADAMTS7Q9UKP4 1686 aa16.25■□□□□ 0.19
GARNL3-220ENST00000496711 PXDNQ92626 1479 aa16.25■□□□□ 0.19
GARNL3-220ENST00000496711 LMTK3Q96Q04 1460 aa16.25■□□□□ 0.19
GARNL3-220ENST00000496711 FKBP5Q13451 457 aaPredicted RBP16.25■□□□□ 0.19
GARNL3-220ENST00000496711 LRRC59Q96AG4 307 aaKnown RBP16.25■□□□□ 0.19
GARNL3-220ENST00000496711 C19orf44Q9H6X5 657 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms