RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 KIAA0232Q92628 1395 aa13.99□□□□□ -0.17
CHMP3-209ENST00000494623 CRB1P82279 1406 aa13.99□□□□□ -0.17
CHMP3-209ENST00000494623 DCTPP1Q9H773 170 aa13.99□□□□□ -0.17
CHMP3-209ENST00000494623 ARHGAP23Q9P227 1491 aa13.99□□□□□ -0.17
CHMP3-209ENST00000494623 ARHGEF10O15013 1369 aa13.99□□□□□ -0.17
CHMP3-209ENST00000494623 LTV1Q96GA3 475 aaPredicted RBP13.99□□□□□ -0.17
CHMP3-209ENST00000494623 SLIT1O75093 1534 aa13.98□□□□□ -0.17
CHMP3-209ENST00000494623 KIF24Q5T7B8 1368 aa13.98□□□□□ -0.17
CHMP3-209ENST00000494623 C14orf37Q86TY3 774 aa13.98□□□□□ -0.17
CHMP3-209ENST00000494623 HSCBQ8IWL3 235 aa13.98□□□□□ -0.17
CHMP3-209ENST00000494623 C16orf71Q8IYS4 520 aaPredicted RBP13.98□□□□□ -0.17
CHMP3-209ENST00000494623 APBB1O00213 710 aa13.98□□□□□ -0.17
CHMP3-209ENST00000494623 RBM25P49756 843 aaKnown RBP13.98□□□□□ -0.17
CHMP3-209ENST00000494623 ABTB2Q8N961 1025 aa13.98□□□□□ -0.17
CHMP3-209ENST00000494623 SLC4A10Q6U841 1118 aa13.97□□□□□ -0.17
CHMP3-209ENST00000494623 TBC1D9Q6ZT07 1266 aa13.97□□□□□ -0.17
CHMP3-209ENST00000494623 G2E3Q7L622 706 aa13.97□□□□□ -0.17
CHMP3-209ENST00000494623 PTPRCP08575 1304 aa13.97□□□□□ -0.17
CHMP3-209ENST00000494623 ANKRD44Q8N8A2 993 aa13.97□□□□□ -0.17
CHMP3-209ENST00000494623 GAS2L2Q8NHY3 880 aa13.97□□□□□ -0.17
CHMP3-209ENST00000494623 RBM33Q96EV2 1170 aaKnown RBP13.97□□□□□ -0.17
CHMP3-209ENST00000494623 MEIS3Q99687 375 aa13.97□□□□□ -0.17
CHMP3-209ENST00000494623 DIP2AQ14689 1571 aa13.97□□□□□ -0.17
CHMP3-209ENST00000494623 PLEKHM2Q8IWE5 1019 aa13.96□□□□□ -0.17
CHMP3-209ENST00000494623 RPAP2Q8IXW5 612 aaPredicted RBP13.96□□□□□ -0.17
CHMP3-209ENST00000494623 RGPD8O14715 1765 aaPredicted RBP13.96□□□□□ -0.17
CHMP3-209ENST00000494623 NALCNQ8IZF0 1738 aa13.96□□□□□ -0.18
CHMP3-209ENST00000494623 RGS12O14924 1447 aa13.96□□□□□ -0.18
CHMP3-209ENST00000494623 IGSF1Q8N6C5 1336 aa13.96□□□□□ -0.18
CHMP3-209ENST00000494623 F6X3S4 739 aa13.96□□□□□ -0.18
CHMP3-209ENST00000494623 CEP85Q6P2H3 762 aa13.96□□□□□ -0.18
CHMP3-209ENST00000494623 TRHP20396 242 aaPredicted RBP13.95□□□□□ -0.18
CHMP3-209ENST00000494623 HOXC9P31274 260 aa13.95□□□□□ -0.18
CHMP3-209ENST00000494623 IL27Q8NEV9 243 aa13.95□□□□□ -0.18
CHMP3-209ENST00000494623 RGPD1P0DJD0 1748 aa13.95□□□□□ -0.18
CHMP3-209ENST00000494623 MSH6P52701 1360 aa13.94□□□□□ -0.18
CHMP3-209ENST00000494623 GSPT1P15170 499 aaKnown RBP13.94□□□□□ -0.18
CHMP3-209ENST00000494623 NECTIN2Q92692 538 aa13.94□□□□□ -0.18
CHMP3-209ENST00000494623 CHMP5Q9NZZ3 219 aa13.94□□□□□ -0.18
CHMP3-209ENST00000494623 SMARCA5O60264 1052 aaPredicted RBP13.94□□□□□ -0.18
CHMP3-209ENST00000494623 KDRP35968 1356 aa13.94□□□□□ -0.18
CHMP3-209ENST00000494623 CEP170BQ9Y4F5 1589 aaPredicted RBP13.93□□□□□ -0.18
CHMP3-209ENST00000494623 GNAT3A8MTJ3 354 aa13.93□□□□□ -0.18
CHMP3-209ENST00000494623 RIMS1Q86UR5 1692 aaKnown RBP13.93□□□□□ -0.18
CHMP3-209ENST00000494623 RTL1A6NKG5 1358 aa13.93□□□□□ -0.18
CHMP3-209ENST00000494623 CDC45O75419 566 aa13.93□□□□□ -0.18
CHMP3-209ENST00000494623 OTUD7AQ8TE49 926 aaPredicted RBP13.93□□□□□ -0.18
CHMP3-209ENST00000494623 STK31Q9BXU1 1019 aa13.92□□□□□ -0.18
CHMP3-209ENST00000494623 USHBP1Q8N6Y0 703 aa13.92□□□□□ -0.18
CHMP3-209ENST00000494623 KIF2CQ99661 725 aa13.92□□□□□ -0.18
CHMP3-209ENST00000494623 BRPF3Q9ULD4 1205 aa13.92□□□□□ -0.18
CHMP3-209ENST00000494623 ATP10DQ9P241 1426 aa13.92□□□□□ -0.18
CHMP3-209ENST00000494623 TTC22Q5TAA0 569 aa13.92□□□□□ -0.18
CHMP3-209ENST00000494623 SNX21Q969T3 373 aa13.92□□□□□ -0.18
CHMP3-209ENST00000494623 FER1L4A9Z1Z3 1794 aa13.91□□□□□ -0.18
CHMP3-209ENST00000494623 ZBTB7CA1YPR0 619 aa13.91□□□□□ -0.18
CHMP3-209ENST00000494623 HTATSF1O43719 755 aaKnown RBP13.91□□□□□ -0.18
CHMP3-209ENST00000494623 HSP90AB1P08238 724 aaKnown RBP13.91□□□□□ -0.18
CHMP3-209ENST00000494623 RBM42Q9BTD8 480 aaKnown RBP13.91□□□□□ -0.18
CHMP3-209ENST00000494623 CCT4P50991 539 aaKnown RBP13.91□□□□□ -0.18
CHMP3-209ENST00000494623 IL17REQ8NFR9 667 aa13.91□□□□□ -0.18
CHMP3-209ENST00000494623 PHF8Q9UPP1 1060 aa13.91□□□□□ -0.18
CHMP3-209ENST00000494623 PIK3C2AO00443 1686 aa13.9□□□□□ -0.18
CHMP3-209ENST00000494623 MCM4P33991 863 aa13.9□□□□□ -0.18
CHMP3-209ENST00000494623 ANKARQ7Z5J8 1434 aa13.9□□□□□ -0.18
CHMP3-209ENST00000494623 PLEKHG5O94827 1062 aa13.89□□□□□ -0.19
CHMP3-209ENST00000494623 FKBP5Q13451 457 aaPredicted RBP13.89□□□□□ -0.19
CHMP3-209ENST00000494623 CCDC30Q5VVM6 783 aa13.89□□□□□ -0.19
CHMP3-209ENST00000494623 RTN4Q9NQC3 1192 aaKnown RBP13.89□□□□□ -0.19
CHMP3-209ENST00000494623 FOXD4L1Q9NU39 408 aa13.89□□□□□ -0.19
CHMP3-209ENST00000494623 FMN2Q9NZ56 1722 aa13.89□□□□□ -0.19
CHMP3-209ENST00000494623 HMMRO75330 724 aa13.89□□□□□ -0.19
CHMP3-209ENST00000494623 ANKLE2Q86XL3 938 aa13.89□□□□□ -0.19
CHMP3-209ENST00000494623 CD2BP2O95400 341 aaKnown RBP13.88□□□□□ -0.19
CHMP3-209ENST00000494623 FLIIQ13045 1269 aa13.88□□□□□ -0.19
CHMP3-209ENST00000494623 TAF7Q15545 349 aaPredicted RBP13.88□□□□□ -0.19
CHMP3-209ENST00000494623 HSP90AA1P07900 732 aaKnown RBP13.88□□□□□ -0.19
CHMP3-209ENST00000494623 GNAI2P04899 355 aa13.87□□□□□ -0.19
CHMP3-209ENST00000494623 SDSP20132 328 aa13.87□□□□□ -0.19
CHMP3-209ENST00000494623 PSME1Q06323 249 aa13.87□□□□□ -0.19
CHMP3-209ENST00000494623 ESCO1Q5FWF5 840 aa13.87□□□□□ -0.19
CHMP3-209ENST00000494623 XRN1Q8IZH2 1706 aaKnown RBP13.87□□□□□ -0.19
CHMP3-209ENST00000494623 MAP3K5Q99683 1374 aa13.86□□□□□ -0.19
CHMP3-209ENST00000494623 GZF1Q9H116 711 aaPredicted RBP13.86□□□□□ -0.19
CHMP3-209ENST00000494623 EXOC6BQ9Y2D4 811 aa13.86□□□□□ -0.19
CHMP3-209ENST00000494623 NBPF6Q5VWK0 638 aa13.85□□□□□ -0.19
CHMP3-209ENST00000494623 NBPF4Q96M43 638 aa13.85□□□□□ -0.19
CHMP3-209ENST00000494623 K7ELQ4 463 aaPredicted RBP13.84□□□□□ -0.19
CHMP3-209ENST00000494623 DDIT3P35638 169 aa13.84□□□□□ -0.19
CHMP3-209ENST00000494623 IP6K1Q92551 441 aa13.84□□□□□ -0.19
CHMP3-209ENST00000494623 CASC1Q6TDU7 716 aa13.84□□□□□ -0.19
CHMP3-209ENST00000494623 USP26Q9BXU7 913 aa13.84□□□□□ -0.19
CHMP3-209ENST00000494623 TRAK2O60296 914 aa13.84□□□□□ -0.19
CHMP3-209ENST00000494623 ARXQ96QS3 562 aa13.84□□□□□ -0.19
CHMP3-209ENST00000494623 NCOA3Q9Y6Q9 1424 aa13.83□□□□□ -0.2
CHMP3-209ENST00000494623 EIF5BO60841 1220 aaKnown RBP13.83□□□□□ -0.2
CHMP3-209ENST00000494623 GNAI3P08754 354 aa13.83□□□□□ -0.2
CHMP3-209ENST00000494623 EIF2S2P20042 333 aaKnown RBP13.83□□□□□ -0.2
CHMP3-209ENST00000494623 HDGFL1Q5TGJ6 251 aa13.83□□□□□ -0.2
CHMP3-209ENST00000494623 LGR6Q9HBX8 967 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms