RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CHD1LQ86WJ1 897 aa13.13□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 IFT57Q9NWB7 429 aa13.13□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 PRDM10Q9NQV6 1147 aa13.12□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 ZHX1Q9UKY1 873 aaPredicted RBP13.12□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 ABCA9Q8IUA7 1624 aa13.11□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 RNF17Q9BXT8 1623 aaKnown RBP13.11□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 ANKRD24Q8TF21 1146 aa13.11□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 LGR6Q9HBX8 967 aa13.11□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 ABCC11Q96J66 1382 aa13.11□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 ZNF771Q7L3S4 317 aaPredicted RBP13.11□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 NUTM1Q86Y26 1132 aa13.11□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 TBX22Q9Y458 520 aa13.11□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 RNF123Q5XPI4 1314 aa13.11□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 MCM4P33991 863 aa13.11□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 TAF7Q15545 349 aaPredicted RBP13.11□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 NSD2O96028 1365 aa13.1□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 GCP02774 474 aa13.1□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 NASPP49321 788 aaPredicted RBP13.1□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 SETD1BQ9UPS6 1966 aaKnown RBP13.1□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 TET3O43151 1660 aa13.1□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 TNNT3P45378 269 aaPredicted RBP13.1□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 TAF7LQ5H9L4 462 aa13.1□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 PANK2Q9BZ23 570 aa13.1□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 SRGAP3O43295 1099 aa13.09□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 XRCC6P12956 609 aaKnown RBP eCLIP13.09□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 TATP17735 454 aaPredicted RBP13.09□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 CSPP1Q1MSJ5 1256 aa13.09□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 PHAXQ9H814 394 aaKnown RBP13.09□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 PPRC1Q5VV67 1664 aaKnown RBP13.09□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 KIDINS220Q9ULH0 1771 aa13.09□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 KIF1BO60333 1816 aa13.09□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 BLMP54132 1417 aaPredicted RBP13.09□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 GORABQ5T7V8 394 aa13.09□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 HOXC9P31274 260 aa13.08□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 FLIIQ13045 1269 aa13.08□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 LRRFIP2Q9Y608 721 aaKnown RBP13.08□□□□□ -0.31
MSH5-SAPCD1-207ENST00000493662 NEXNQ0ZGT2 675 aa13.08□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 NBPF6Q5VWK0 638 aa13.08□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 NBPF4Q96M43 638 aa13.08□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 SPHKAPQ2M3C7 1700 aa13.08□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 PI4KAP2A4QPH2 592 aa13.08□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 KCNQ3O43525 872 aa13.08□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 PI4KAP1Q8N8J0 262 aa13.08□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 DTNBO60941 627 aa13.07□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 GNAI2P04899 355 aa13.07□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 CABP4P57796 275 aa13.07□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 PLEKHF1Q96S99 279 aa13.07□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 ZNF521Q96K83 1311 aa13.07□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 OTUD7AQ8TE49 926 aaPredicted RBP13.07□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 NEUROD6Q96NK8 337 aa13.07□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 LARP6Q9BRS8 491 aaKnown RBP13.07□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 ATP5J2-PTCD1G3V325 749 aa13.07□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 MRPL50Q8N5N7 158 aaKnown RBP13.07□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 CHPF2Q9P2E5 772 aa13.07□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 MADDQ8WXG6 1647 aa13.07□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 SRCIN1Q9C0H9 1055 aa13.06□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 C8orf34Q49A92 452 aa13.06□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 MAP3K4Q9Y6R4 1608 aa13.06□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 UQCRHLA0A096LP55 91 aa13.06□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 UQCRHP07919 91 aa13.06□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 BBXQ8WY36 941 aaPredicted RBP13.06□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 KDM5AP29375 1690 aaKnown RBP13.06□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 NPC1L1Q9UHC9 1359 aa13.05□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 MYOM2P54296 1465 aa13.05□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 ZMYM4Q5VZL5 1548 aa13.05□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 ABCA6Q8N139 1617 aa13.05□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.05□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 IFIT2P09913 472 aaKnown RBP13.05□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 NINLQ9Y2I6 1382 aa13.05□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 KCNH5Q8NCM2 988 aa13.05□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 SBNO2Q9Y2G9 1366 aa13.05□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 CCDC173Q0VFZ6 552 aa13.05□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 CCDC27Q2M243 656 aa13.05□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 ISY1Q9ULR0 285 aaKnown RBP13.05□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 A2ML1A8K2U0 1454 aa13.04□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 NFATC2IPQ8NCF5 419 aa13.04□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 ALDH1L2Q3SY69 923 aa13.04□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 RIMBP3CA6NJZ7 1639 aa13.03□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 RIMBP3BA6NNM3 1639 aa13.03□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 RIMBP3Q9UFD9 1639 aa13.03□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 CT47B1P0C2W7 299 aaPredicted RBP13.03□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 ZSCAN30Q86W11 494 aa13.03□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 GTF2E1P29083 439 aaPredicted RBP13.03□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 G3BP1Q13283 466 aaKnown RBP eCLIP13.03□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 GNAI3P08754 354 aa13.02□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 MCCP23508 829 aa13.02□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 FOSBP53539 338 aa13.02□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 CWF19L2Q2TBE0 894 aaKnown RBP13.02□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 PUS7Q96PZ0 661 aaKnown RBP13.02□□□□□ -0.32
MSH5-SAPCD1-207ENST00000493662 ZBTB3Q9H5J0 574 aa13.02□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 INO80Q9ULG1 1556 aaPredicted RBP13.02□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 EDC4Q6P2E9 1401 aaKnown RBP13.02□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 KDM4AO75164 1064 aa13.02□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 DDX58O95786 925 aaKnown RBP13.02□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 DIAPH3Q9NSV4 1193 aa13.02□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 ZBTB40Q9NUA8 1239 aa13.02□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 FLT4P35916 1363 aa13.02□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 UPF3BQ9BZI7 483 aaKnown RBP13.01□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 DIP2CQ9Y2E4 1556 aa13.01□□□□□ -0.33
MSH5-SAPCD1-207ENST00000493662 DNAJC2Q99543 621 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms