RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 CAVIN1Q6NZI2 390 aaKnown RBP15.46■□□□□ 0.07
COL6A3-212ENST00000491769 ZNF622Q969S3 477 aaKnown RBP eCLIP15.46■□□□□ 0.07
COL6A3-212ENST00000491769 CLEC11AQ9Y240 323 aa15.46■□□□□ 0.07
COL6A3-212ENST00000491769 CEP57L1Q8IYX8 460 aa15.46■□□□□ 0.07
COL6A3-212ENST00000491769 SPC24Q8NBT2 197 aa15.46■□□□□ 0.07
COL6A3-212ENST00000491769 CUL5Q93034 780 aa15.46■□□□□ 0.07
COL6A3-212ENST00000491769 UBA5Q9GZZ9 404 aa15.46■□□□□ 0.07
COL6A3-212ENST00000491769 CCDC39Q9UFE4 941 aa15.46■□□□□ 0.07
COL6A3-212ENST00000491769 ANKRD50Q9ULJ7 1429 aa15.46■□□□□ 0.06
COL6A3-212ENST00000491769 C16orf71Q8IYS4 520 aaPredicted RBP15.45■□□□□ 0.06
COL6A3-212ENST00000491769 C6orf229H3BNL8 230 aa15.45■□□□□ 0.06
COL6A3-212ENST00000491769 PRPF40AO75400 957 aaKnown RBP15.45■□□□□ 0.06
COL6A3-212ENST00000491769 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.45■□□□□ 0.06
COL6A3-212ENST00000491769 RAD54L2Q9Y4B4 1467 aa15.45■□□□□ 0.06
COL6A3-212ENST00000491769 FEZ1Q99689 392 aa15.45■□□□□ 0.06
COL6A3-212ENST00000491769 TSPY26PQ9H489 355 aa15.45■□□□□ 0.06
COL6A3-212ENST00000491769 RAPGEF3O95398 923 aa15.45■□□□□ 0.06
COL6A3-212ENST00000491769 CCDC112Q8NEF3 446 aa15.45■□□□□ 0.06
COL6A3-212ENST00000491769 DHX8Q14562 1220 aaKnown RBP15.44■□□□□ 0.06
COL6A3-212ENST00000491769 TRMT1LQ7Z2T5 733 aaKnown RBP15.44■□□□□ 0.06
COL6A3-212ENST00000491769 BCAR3O75815 825 aa15.44■□□□□ 0.06
COL6A3-212ENST00000491769 VTI1AQ96AJ9 217 aa15.44■□□□□ 0.06
COL6A3-212ENST00000491769 SLC12A5Q9H2X9 1139 aa15.44■□□□□ 0.06
COL6A3-212ENST00000491769 PPP1R12BO60237 982 aaPredicted RBP15.44■□□□□ 0.06
COL6A3-212ENST00000491769 IFIT1P09914 478 aaKnown RBP15.44■□□□□ 0.06
COL6A3-212ENST00000491769 DHX37Q8IY37 1157 aaKnown RBP15.44■□□□□ 0.06
COL6A3-212ENST00000491769 MCM2P49736 904 aa15.43■□□□□ 0.06
COL6A3-212ENST00000491769 CWC27Q6UX04 472 aaKnown RBP15.43■□□□□ 0.06
COL6A3-212ENST00000491769 FAM177A1Q8N128 213 aaPredicted RBP15.43■□□□□ 0.06
COL6A3-212ENST00000491769 NFKBIBQ15653 356 aa15.43■□□□□ 0.06
COL6A3-212ENST00000491769 IMMTQ16891 758 aaKnown RBP15.43■□□□□ 0.06
COL6A3-212ENST00000491769 PSMD1Q99460 953 aa15.43■□□□□ 0.06
COL6A3-212ENST00000491769 AEBP1Q8IUX7 1158 aa15.43■□□□□ 0.06
COL6A3-212ENST00000491769 GCC1Q96CN9 775 aa15.43■□□□□ 0.06
COL6A3-212ENST00000491769 NASPP49321 788 aaPredicted RBP15.42■□□□□ 0.06
COL6A3-212ENST00000491769 AAMPQ13685 434 aa15.42■□□□□ 0.06
COL6A3-212ENST00000491769 WASF1Q92558 559 aa15.42■□□□□ 0.06
COL6A3-212ENST00000491769 TNMDQ9H2S6 317 aa15.42■□□□□ 0.06
COL6A3-212ENST00000491769 BLOC1S2Q6QNY1 142 aa15.42■□□□□ 0.06
COL6A3-212ENST00000491769 ZNF444Q8N0Y2 327 aaPredicted RBP15.42■□□□□ 0.06
COL6A3-212ENST00000491769 JAKMIP3Q5VZ66 844 aa15.42■□□□□ 0.06
COL6A3-212ENST00000491769 IL1RAPL2Q9NP60 686 aa15.42■□□□□ 0.06
COL6A3-212ENST00000491769 EIF5P55010 431 aaKnown RBP15.42■□□□□ 0.06
COL6A3-212ENST00000491769 SCAPERQ9BY12 1400 aa15.41■□□□□ 0.06
COL6A3-212ENST00000491769 PPP2R1AP30153 589 aa15.41■□□□□ 0.06
COL6A3-212ENST00000491769 LARP1BQ659C4 914 aaKnown RBP15.41■□□□□ 0.06
COL6A3-212ENST00000491769 KCNH5Q8NCM2 988 aa15.41■□□□□ 0.06
COL6A3-212ENST00000491769 CCDC150Q8NCX0 1101 aa15.41■□□□□ 0.06
COL6A3-212ENST00000491769 PRG4Q92954 1404 aaPredicted RBP15.41■□□□□ 0.06
COL6A3-212ENST00000491769 GNAT3A8MTJ3 354 aa15.41■□□□□ 0.06
COL6A3-212ENST00000491769 MYD88Q99836 296 aa15.41■□□□□ 0.06
COL6A3-212ENST00000491769 RSPH6AQ9H0K4 717 aa15.41■□□□□ 0.06
COL6A3-212ENST00000491769 PDZRN3Q9UPQ7 1066 aa15.41■□□□□ 0.06
COL6A3-212ENST00000491769 COMMD10Q9Y6G5 202 aa15.41■□□□□ 0.06
COL6A3-212ENST00000491769 PDRG1Q9NUG6 133 aa15.41■□□□□ 0.06
COL6A3-212ENST00000491769 TRMT112Q9UI30 125 aaKnown RBP15.41■□□□□ 0.06
COL6A3-212ENST00000491769 TTC16Q8NEE8 873 aa15.4■□□□□ 0.06
COL6A3-212ENST00000491769 JAKMIP1Q96N16 626 aaKnown RBP15.4■□□□□ 0.06
COL6A3-212ENST00000491769 FAM43AQ8N2R8 423 aa15.4■□□□□ 0.06
COL6A3-212ENST00000491769 AKAP2Q9Y2D5 859 aa15.4■□□□□ 0.06
COL6A3-212ENST00000491769 EHMT1Q9H9B1 1298 aa15.4■□□□□ 0.06
COL6A3-212ENST00000491769 RABEP1Q15276 862 aa15.4■□□□□ 0.06
COL6A3-212ENST00000491769 CETN2P41208 172 aa15.4■□□□□ 0.06
COL6A3-212ENST00000491769 USHBP1Q8N6Y0 703 aa15.4■□□□□ 0.06
COL6A3-212ENST00000491769 FGD5Q6ZNL6 1462 aa15.4■□□□□ 0.06
COL6A3-212ENST00000491769 FAM193AP78312 1265 aa15.39■□□□□ 0.06
COL6A3-212ENST00000491769 MIS18AQ9NYP9 233 aa15.39■□□□□ 0.06
COL6A3-212ENST00000491769 ATAD2BQ9ULI0 1458 aa15.39■□□□□ 0.05
COL6A3-212ENST00000491769 ECM2O94769 699 aaPredicted RBP15.39■□□□□ 0.05
COL6A3-212ENST00000491769 TAF4BQ92750 862 aa15.39■□□□□ 0.05
COL6A3-212ENST00000491769 EXOC5O00471 708 aa15.39■□□□□ 0.05
COL6A3-212ENST00000491769 RANBP6O60518 1105 aaKnown RBP15.39■□□□□ 0.05
COL6A3-212ENST00000491769 SLF2Q8IX21 1173 aa15.39■□□□□ 0.05
COL6A3-212ENST00000491769 SYNJ2O15056 1496 aa15.39■□□□□ 0.05
COL6A3-212ENST00000491769 LRRFIP2Q9Y608 721 aaKnown RBP15.39■□□□□ 0.05
COL6A3-212ENST00000491769 MBD3O95983 291 aa15.39■□□□□ 0.05
COL6A3-212ENST00000491769 KIAA1328Q86T90 577 aa15.38■□□□□ 0.05
COL6A3-212ENST00000491769 CEP131Q9UPN4 1083 aa15.38■□□□□ 0.05
COL6A3-212ENST00000491769 SLC5A1P13866 664 aa15.38■□□□□ 0.05
COL6A3-212ENST00000491769 HMGN5P82970 282 aaKnown RBP15.38■□□□□ 0.05
COL6A3-212ENST00000491769 CBFA2T2O43439 604 aa15.38■□□□□ 0.05
COL6A3-212ENST00000491769 NUTM1Q86Y26 1132 aa15.38■□□□□ 0.05
COL6A3-212ENST00000491769 CCDC7Q96M83 1385 aa15.37■□□□□ 0.05
COL6A3-212ENST00000491769 SLC52A1Q9NWF4 448 aa15.37■□□□□ 0.05
COL6A3-212ENST00000491769 CUX1P39880 1505 aa15.37■□□□□ 0.05
COL6A3-212ENST00000491769 MYO1BO43795 1136 aa15.37■□□□□ 0.05
COL6A3-212ENST00000491769 FERMT2Q96AC1 680 aa15.37■□□□□ 0.05
COL6A3-212ENST00000491769 NAPBQ9H115 298 aa15.37■□□□□ 0.05
COL6A3-212ENST00000491769 KRT85P78386 507 aa15.37■□□□□ 0.05
COL6A3-212ENST00000491769 DDX11Q96FC9 970 aa15.37■□□□□ 0.05
COL6A3-212ENST00000491769 RFC4P35249 363 aa15.37■□□□□ 0.05
COL6A3-212ENST00000491769 SLC4A8Q2Y0W8 1093 aa15.37■□□□□ 0.05
COL6A3-212ENST00000491769 EPB41L2O43491 1005 aaKnown RBP15.36■□□□□ 0.05
COL6A3-212ENST00000491769 SPATA32Q96LK8 384 aa15.36■□□□□ 0.05
COL6A3-212ENST00000491769 CWC15Q9P013 229 aaKnown RBP15.36■□□□□ 0.05
COL6A3-212ENST00000491769 GPTP24298 496 aa15.36■□□□□ 0.05
COL6A3-212ENST00000491769 IFIT5Q13325 482 aaKnown RBP15.36■□□□□ 0.05
COL6A3-212ENST00000491769 WWC3Q9ULE0 1092 aa15.36■□□□□ 0.05
COL6A3-212ENST00000491769 CCDC192P0DO97 292 aa15.36■□□□□ 0.05
COL6A3-212ENST00000491769 TSG101Q99816 390 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms