RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 FLAD1Q8NFF5 587 aa11.02□□□□□ -0.65
USP54-213ENST00000481991 ZCRB1Q8TBF4 217 aaKnown RBP11.02□□□□□ -0.65
USP54-213ENST00000481991 USP47Q96K76 1375 aa11.02□□□□□ -0.65
USP54-213ENST00000481991 SMIM5Q71RC9 77 aa11.01□□□□□ -0.65
USP54-213ENST00000481991 AK7Q96M32 723 aa11.01□□□□□ -0.65
USP54-213ENST00000481991 GOLGB1Q14789 3259 aaKnown RBP11.01□□□□□ -0.65
USP54-213ENST00000481991 WNK3Q9BYP7 1800 aa11□□□□□ -0.65
USP54-213ENST00000481991 PAPPAQ13219 1627 aa10.99□□□□□ -0.65
USP54-213ENST00000481991 AMPHP49418 695 aa10.99□□□□□ -0.65
USP54-213ENST00000481991 MPRIPQ6WCQ1 1025 aa10.99□□□□□ -0.65
USP54-213ENST00000481991 HDGFL2Q7Z4V5 671 aaPredicted RBP10.99□□□□□ -0.65
USP54-213ENST00000481991 NMRK2Q9NPI5 230 aa10.99□□□□□ -0.65
USP54-213ENST00000481991 BCS1LQ9Y276 419 aa10.99□□□□□ -0.65
USP54-213ENST00000481991 PIK3C2AO00443 1686 aa10.98□□□□□ -0.65
USP54-213ENST00000481991 HMGB2P26583 209 aaKnown RBP10.98□□□□□ -0.65
USP54-213ENST00000481991 PRELPP51888 382 aa10.98□□□□□ -0.65
USP54-213ENST00000481991 KLRG1Q96E93 195 aa10.98□□□□□ -0.65
USP54-213ENST00000481991 ANKRD36BQ8N2N9 1353 aa10.98□□□□□ -0.65
USP54-213ENST00000481991 ABCC6O95255 1503 aa10.98□□□□□ -0.65
USP54-213ENST00000481991 IP6K1Q92551 441 aa10.97□□□□□ -0.65
USP54-213ENST00000481991 ADCY9O60503 1353 aa10.97□□□□□ -0.65
USP54-213ENST00000481991 TRPM1Q7Z4N2 1603 aa10.96□□□□□ -0.65
USP54-213ENST00000481991 A0A0G2JLW4 131 aa10.96□□□□□ -0.65
USP54-213ENST00000481991 ADRA2BP18089 450 aa10.96□□□□□ -0.65
USP54-213ENST00000481991 FBLN1P23142 703 aa10.96□□□□□ -0.65
USP54-213ENST00000481991 USHBP1Q8N6Y0 703 aa10.96□□□□□ -0.65
USP54-213ENST00000481991 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.95□□□□□ -0.66
USP54-213ENST00000481991 RAPGEF4Q8WZA2 1011 aa10.95□□□□□ -0.66
USP54-213ENST00000481991 SLC12A5Q9H2X9 1139 aa10.95□□□□□ -0.66
USP54-213ENST00000481991 FCHSD2O94868 740 aa10.94□□□□□ -0.66
USP54-213ENST00000481991 RRAGCQ9HB90 399 aa10.94□□□□□ -0.66
USP54-213ENST00000481991 TATP17735 454 aaPredicted RBP10.93□□□□□ -0.66
USP54-213ENST00000481991 C9orf131Q5VYM1 1079 aa10.93□□□□□ -0.66
USP54-213ENST00000481991 RBM46Q8TBY0 533 aaKnown RBP10.93□□□□□ -0.66
USP54-213ENST00000481991 NFAT5O94916 1531 aa10.93□□□□□ -0.66
USP54-213ENST00000481991 QRICH2Q9H0J4 1663 aa10.92□□□□□ -0.66
USP54-213ENST00000481991 MMP10P09238 476 aa10.92□□□□□ -0.66
USP54-213ENST00000481991 NEUROD1Q13562 356 aa10.92□□□□□ -0.66
USP54-213ENST00000481991 AMIGO3Q86WK7 504 aa10.92□□□□□ -0.66
USP54-213ENST00000481991 SMARCC1Q92922 1105 aaPredicted RBP10.92□□□□□ -0.66
USP54-213ENST00000481991 COG3Q96JB2 828 aa10.92□□□□□ -0.66
USP54-213ENST00000481991 TERF2IPQ9NYB0 399 aa10.92□□□□□ -0.66
USP54-213ENST00000481991 NSD2O96028 1365 aa10.91□□□□□ -0.66
USP54-213ENST00000481991 USP31Q70CQ4 1352 aa10.91□□□□□ -0.66
USP54-213ENST00000481991 PALLDQ8WX93 1383 aa10.91□□□□□ -0.66
USP54-213ENST00000481991 TUBGCP6Q96RT7 1819 aa10.91□□□□□ -0.66
USP54-213ENST00000481991 HOXC9P31274 260 aa10.91□□□□□ -0.66
USP54-213ENST00000481991 FSTL1Q12841 308 aa10.91□□□□□ -0.66
USP54-213ENST00000481991 JMYQ8N9B5 988 aa10.91□□□□□ -0.66
USP54-213ENST00000481991 L3MBTL2Q969R5 705 aa10.91□□□□□ -0.66
USP54-213ENST00000481991 QSER1Q2KHR3 1735 aa10.9□□□□□ -0.66
USP54-213ENST00000481991 GNPATO15228 680 aa10.9□□□□□ -0.66
USP54-213ENST00000481991 TGFB2P61812 414 aa10.9□□□□□ -0.66
USP54-213ENST00000481991 NBPF6Q5VWK0 638 aa10.9□□□□□ -0.66
USP54-213ENST00000481991 NBPF4Q96M43 638 aa10.9□□□□□ -0.66
USP54-213ENST00000481991 ROCK2O75116 1388 aaKnown RBP10.9□□□□□ -0.67
USP54-213ENST00000481991 MAP3K19Q56UN5 1328 aa10.89□□□□□ -0.67
USP54-213ENST00000481991 KDM2BQ8NHM5 1336 aa10.89□□□□□ -0.67
USP54-213ENST00000481991 HSPA1AP0DMV8 641 aaKnown RBP10.89□□□□□ -0.67
USP54-213ENST00000481991 HSPA1BP0DMV9 641 aaKnown RBP10.89□□□□□ -0.67
USP54-213ENST00000481991 DPEP1P16444 411 aa10.89□□□□□ -0.67
USP54-213ENST00000481991 RNF181Q9P0P0 153 aa10.89□□□□□ -0.67
USP54-213ENST00000481991 COL24A1Q17RW2 1714 aa10.89□□□□□ -0.67
USP54-213ENST00000481991 SSFA2P28290 1259 aa10.88□□□□□ -0.67
USP54-213ENST00000481991 ATP6V1AP38606 617 aa10.88□□□□□ -0.67
USP54-213ENST00000481991 TMF1P82094 1093 aa10.88□□□□□ -0.67
USP54-213ENST00000481991 RRS1Q15050 365 aaKnown RBP10.88□□□□□ -0.67
USP54-213ENST00000481991 TRAPPC3LQ5T215 181 aa10.88□□□□□ -0.67
USP54-213ENST00000481991 PIGBQ92521 554 aa10.88□□□□□ -0.67
USP54-213ENST00000481991 KIAA1210Q9ULL0 1709 aa10.88□□□□□ -0.67
USP54-213ENST00000481991 LOC102724428A0A0B4J2F2 783 aa10.87□□□□□ -0.67
USP54-213ENST00000481991 SIK1P57059 783 aa10.87□□□□□ -0.67
USP54-213ENST00000481991 LINC00116Q8NCU8 138 aa10.87□□□□□ -0.67
USP54-213ENST00000481991 SMC1BQ8NDV3 1235 aa10.87□□□□□ -0.67
USP54-213ENST00000481991 CCDC87Q9NVE4 849 aa10.87□□□□□ -0.67
USP54-213ENST00000481991 PARP3Q9Y6F1 533 aa10.87□□□□□ -0.67
USP54-213ENST00000481991 SBNO2Q9Y2G9 1366 aa10.87□□□□□ -0.67
USP54-213ENST00000481991 PCDH11XQ9BZA7 1347 aa10.86□□□□□ -0.67
USP54-213ENST00000481991 PCDH11YQ9BZA8 1340 aa10.86□□□□□ -0.67
USP54-213ENST00000481991 LTN1O94822 1766 aa10.86□□□□□ -0.67
USP54-213ENST00000481991 NLGN1Q8N2Q7 840 aa10.86□□□□□ -0.67
USP54-213ENST00000481991 PIM2Q9P1W9 311 aa10.86□□□□□ -0.67
USP54-213ENST00000481991 DOT1LQ8TEK3 1739 aa10.86□□□□□ -0.67
USP54-213ENST00000481991 CGNL1Q0VF96 1302 aa10.85□□□□□ -0.67
USP54-213ENST00000481991 RFC4P35249 363 aa10.85□□□□□ -0.67
USP54-213ENST00000481991 SIN3AQ96ST3 1273 aa10.85□□□□□ -0.67
USP54-213ENST00000481991 RBM42Q9BTD8 480 aaKnown RBP10.85□□□□□ -0.67
USP54-213ENST00000481991 TMOD3Q9NYL9 352 aa10.85□□□□□ -0.67
USP54-213ENST00000481991 ASAP1Q9ULH1 1129 aa10.85□□□□□ -0.67
USP54-213ENST00000481991 RTCBQ9Y3I0 505 aaKnown RBP10.85□□□□□ -0.67
USP54-213ENST00000481991 MEGF6O75095 1541 aa10.84□□□□□ -0.67
USP54-213ENST00000481991 LY75O60449 1722 aa10.84□□□□□ -0.67
USP54-213ENST00000481991 CYP27B1O15528 508 aa10.84□□□□□ -0.67
USP54-213ENST00000481991 DALRD3Q5D0E6 543 aaKnown RBP10.84□□□□□ -0.67
USP54-213ENST00000481991 CARD11Q9BXL7 1154 aa10.84□□□□□ -0.67
USP54-213ENST00000481991 EDC4Q6P2E9 1401 aaKnown RBP10.84□□□□□ -0.67
USP54-213ENST00000481991 NSD3Q9BZ95 1437 aa10.84□□□□□ -0.67
USP54-213ENST00000481991 PPM1GO15355 546 aaPredicted RBP10.83□□□□□ -0.68
USP54-213ENST00000481991 ITPK1Q13572 414 aa10.83□□□□□ -0.68
USP54-213ENST00000481991 GGNBP2Q9H3C7 697 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms