RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 ZCRB1Q8TBF4 217 aaKnown RBP16.62■□□□□ 0.25
PTPRF-213ENST00000481019 COL3A1P02461 1466 aaPredicted RBP16.61■□□□□ 0.25
PTPRF-213ENST00000481019 SF3B2Q13435 895 aaKnown RBP16.61■□□□□ 0.25
PTPRF-213ENST00000481019 AEBP1Q8IUX7 1158 aa16.61■□□□□ 0.25
PTPRF-213ENST00000481019 ACSBG1Q96GR2 724 aa16.61■□□□□ 0.25
PTPRF-213ENST00000481019 IGSF1Q8N6C5 1336 aa16.61■□□□□ 0.25
PTPRF-213ENST00000481019 PKD1L3Q7Z443 1732 aa16.6■□□□□ 0.25
PTPRF-213ENST00000481019 APBA3O96018 575 aa16.6■□□□□ 0.25
PTPRF-213ENST00000481019 TATP17735 454 aaPredicted RBP16.6■□□□□ 0.25
PTPRF-213ENST00000481019 EZH2Q15910 746 aaKnown RBP16.6■□□□□ 0.25
PTPRF-213ENST00000481019 RAPGEF4Q8WZA2 1011 aa16.6■□□□□ 0.25
PTPRF-213ENST00000481019 CAMKK2Q96RR4 588 aa16.6■□□□□ 0.25
PTPRF-213ENST00000481019 NHSQ6T4R5 1651 aa16.59■□□□□ 0.25
PTPRF-213ENST00000481019 BAG6P46379 1132 aa16.59■□□□□ 0.25
PTPRF-213ENST00000481019 CYP27B1O15528 508 aa16.58■□□□□ 0.24
PTPRF-213ENST00000481019 BCL11BQ9C0K0 894 aaPredicted RBP16.58■□□□□ 0.24
PTPRF-213ENST00000481019 DOT1LQ8TEK3 1739 aa16.57■□□□□ 0.24
PTPRF-213ENST00000481019 PPP2R1AP30153 589 aa16.57■□□□□ 0.24
PTPRF-213ENST00000481019 TOGARAM1Q9Y4F4 1720 aa16.56■□□□□ 0.24
PTPRF-213ENST00000481019 RREB1Q92766 1687 aa16.56■□□□□ 0.24
PTPRF-213ENST00000481019 BTAF1O14981 1849 aa16.55■□□□□ 0.24
PTPRF-213ENST00000481019 PARD3Q8TEW0 1356 aa16.54■□□□□ 0.24
PTPRF-213ENST00000481019 NUP188Q5SRE5 1749 aa16.54■□□□□ 0.24
PTPRF-213ENST00000481019 SULT6B1Q6IMI4 303 aa16.54■□□□□ 0.24
PTPRF-213ENST00000481019 PROM2Q8N271 834 aa16.54■□□□□ 0.24
PTPRF-213ENST00000481019 PCDH11XQ9BZA7 1347 aa16.53■□□□□ 0.24
PTPRF-213ENST00000481019 PCDH11YQ9BZA8 1340 aa16.53■□□□□ 0.24
PTPRF-213ENST00000481019 DIAPH1O60610 1272 aaKnown RBP16.53■□□□□ 0.24
PTPRF-213ENST00000481019 PRIM1P49642 420 aaKnown RBP16.53■□□□□ 0.24
PTPRF-213ENST00000481019 KDRP35968 1356 aa16.52■□□□□ 0.24
PTPRF-213ENST00000481019 KAT6BQ8WYB5 2073 aa16.52■□□□□ 0.24
PTPRF-213ENST00000481019 HMOX1P09601 288 aa16.52■□□□□ 0.24
PTPRF-213ENST00000481019 RGPD3A6NKT7 1758 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-213ENST00000481019 RGPD4Q7Z3J3 1758 aa16.51■□□□□ 0.23
PTPRF-213ENST00000481019 SRCAPQ6ZRS2 3230 aa16.5■□□□□ 0.23
PTPRF-213ENST00000481019 PLSCR1O15162 318 aa16.5■□□□□ 0.23
PTPRF-213ENST00000481019 PHKG2P15735 406 aa16.5■□□□□ 0.23
PTPRF-213ENST00000481019 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.5■□□□□ 0.23
PTPRF-213ENST00000481019 SPG7Q9UQ90 795 aa16.5■□□□□ 0.23
PTPRF-213ENST00000481019 SYTL4Q96C24 671 aaPredicted RBP16.49■□□□□ 0.23
PTPRF-213ENST00000481019 ITGB4P16144 1822 aa16.49■□□□□ 0.23
PTPRF-213ENST00000481019 NKX1-1Q15270 411 aaPredicted RBP16.48■□□□□ 0.23
PTPRF-213ENST00000481019 PSDA5PKW4 1024 aaPredicted RBP16.47■□□□□ 0.23
PTPRF-213ENST00000481019 U2SURPO15042 1029 aaKnown RBP16.47■□□□□ 0.23
PTPRF-213ENST00000481019 TXNRD1Q16881 649 aa16.46■□□□□ 0.23
PTPRF-213ENST00000481019 PLEKHO1Q53GL0 409 aaPredicted RBP16.46■□□□□ 0.23
PTPRF-213ENST00000481019 ZNF530Q6P9A1 599 aaPredicted RBP16.46■□□□□ 0.23
PTPRF-213ENST00000481019 IFNL2Q8IZJ0 200 aa16.46■□□□□ 0.23
PTPRF-213ENST00000481019 ANO8Q9HCE9 1232 aaPredicted RBP16.46■□□□□ 0.23
PTPRF-213ENST00000481019 KDM6AO15550 1401 aaPredicted RBP16.45■□□□□ 0.22
PTPRF-213ENST00000481019 KCNQ4P56696 695 aa16.45■□□□□ 0.22
PTPRF-213ENST00000481019 R3HDM1Q15032 1099 aaKnown RBP16.45■□□□□ 0.22
PTPRF-213ENST00000481019 LRRC4BQ9NT99 713 aa16.45■□□□□ 0.22
PTPRF-213ENST00000481019 PLEKHG2Q9H7P9 1386 aa16.45■□□□□ 0.22
PTPRF-213ENST00000481019 MPRIPQ6WCQ1 1025 aa16.44■□□□□ 0.22
PTPRF-213ENST00000481019 PIGBQ92521 554 aa16.44■□□□□ 0.22
PTPRF-213ENST00000481019 CFAP53Q96M91 514 aa16.44■□□□□ 0.22
PTPRF-213ENST00000481019 LY75O60449 1722 aa16.44■□□□□ 0.22
PTPRF-213ENST00000481019 MTHFSDQ2M296 383 aaKnown RBP16.43■□□□□ 0.22
PTPRF-213ENST00000481019 AMOTQ4VCS5 1084 aa16.43■□□□□ 0.22
PTPRF-213ENST00000481019 PAPPAQ13219 1627 aa16.43■□□□□ 0.22
PTPRF-213ENST00000481019 RALBP1Q15311 655 aa16.42■□□□□ 0.22
PTPRF-213ENST00000481019 PHACTR3Q96KR7 559 aa16.42■□□□□ 0.22
PTPRF-213ENST00000481019 RSPH6AQ9H0K4 717 aa16.42■□□□□ 0.22
PTPRF-213ENST00000481019 U2AF1L5P0DN76 240 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-213ENST00000481019 U2AF1Q01081 240 aaKnown RBP eCLIP16.4■□□□□ 0.22
PTPRF-213ENST00000481019 LGR6Q9HBX8 967 aa16.4■□□□□ 0.22
PTPRF-213ENST00000481019 PRKAR2BP31323 418 aa16.39■□□□□ 0.21
PTPRF-213ENST00000481019 PDGFDQ9GZP0 370 aaPredicted RBP16.39■□□□□ 0.21
PTPRF-213ENST00000481019 PRKRIP1Q9H875 184 aaPredicted RBP16.39■□□□□ 0.21
PTPRF-213ENST00000481019 ASAP1Q9ULH1 1129 aa16.39■□□□□ 0.21
PTPRF-213ENST00000481019 MYBBP1AQ9BQG0 1328 aaKnown RBP16.39■□□□□ 0.21
PTPRF-213ENST00000481019 SCN11AQ9UI33 1791 aa16.38■□□□□ 0.21
PTPRF-213ENST00000481019 VIRMAQ69YN4 1812 aaKnown RBP16.38■□□□□ 0.21
PTPRF-213ENST00000481019 ZNF827Q17R98 1081 aa16.38■□□□□ 0.21
PTPRF-213ENST00000481019 AKAP4Q5JQC9 854 aa16.38■□□□□ 0.21
PTPRF-213ENST00000481019 DIEXFQ68CQ4 756 aaKnown RBP16.38■□□□□ 0.21
PTPRF-213ENST00000481019 DCAF5Q96JK2 942 aa16.38■□□□□ 0.21
PTPRF-213ENST00000481019 PALLDQ8WX93 1383 aa16.38■□□□□ 0.21
PTPRF-213ENST00000481019 ADAMTS7Q9UKP4 1686 aa16.37■□□□□ 0.21
PTPRF-213ENST00000481019 C1orf141Q5JVX7 400 aa16.37■□□□□ 0.21
PTPRF-213ENST00000481019 ATG3Q9NT62 314 aa16.37■□□□□ 0.21
PTPRF-213ENST00000481019 TMOD3Q9NYL9 352 aa16.37■□□□□ 0.21
PTPRF-213ENST00000481019 NUDCQ9Y266 331 aa16.37■□□□□ 0.21
PTPRF-213ENST00000481019 ERVV-2B6SEH9 535 aa16.36■□□□□ 0.21
PTPRF-213ENST00000481019 NBPF14Q5TI25 921 aa16.36■□□□□ 0.21
PTPRF-213ENST00000481019 RNMTO43148 476 aaKnown RBP16.35■□□□□ 0.21
PTPRF-213ENST00000481019 HSP90AB1P08238 724 aaKnown RBP16.35■□□□□ 0.21
PTPRF-213ENST00000481019 CCNL1Q9UK58 526 aaPredicted RBP16.35■□□□□ 0.21
PTPRF-213ENST00000481019 CASZ1Q86V15 1759 aa16.35■□□□□ 0.21
PTPRF-213ENST00000481019 TUBGCP6Q96RT7 1819 aa16.35■□□□□ 0.21
PTPRF-213ENST00000481019 FCHSD2O94868 740 aa16.34■□□□□ 0.21
PTPRF-213ENST00000481019 SLC15A2Q16348 729 aa16.34■□□□□ 0.21
PTPRF-213ENST00000481019 SLC27A3Q5K4L6 730 aa16.34■□□□□ 0.21
PTPRF-213ENST00000481019 NFATC2IPQ8NCF5 419 aa16.34■□□□□ 0.21
PTPRF-213ENST00000481019 AKT1S1Q96B36 256 aa16.34■□□□□ 0.21
PTPRF-213ENST00000481019 SLC4A9Q96Q91 983 aa16.34■□□□□ 0.21
PTPRF-213ENST00000481019 TAF1LQ8IZX4 1826 aa16.33■□□□□ 0.21
PTPRF-213ENST00000481019 CABP4P57796 275 aa16.33■□□□□ 0.2
PTPRF-213ENST00000481019 CCDC184Q52MB2 194 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms