RNA–Protein interactions for RNA: ENST00000469739.6

TOP3A-203, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 3,196 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-203ENST00000469739 MTHFSDQ2M296 383 aaKnown RBP11.86□□□□□ -0.51
TOP3A-203ENST00000469739 SAMD1Q6SPF0 538 aaPredicted RBP11.86□□□□□ -0.51
TOP3A-203ENST00000469739 IFT57Q9NWB7 429 aa11.86□□□□□ -0.51
TOP3A-203ENST00000469739 RTF1Q92541 710 aaKnown RBP11.85□□□□□ -0.51
TOP3A-203ENST00000469739 GLIPR1L2Q4G1C9 344 aa11.85□□□□□ -0.51
TOP3A-203ENST00000469739 EYA1Q99502 592 aa11.85□□□□□ -0.51
TOP3A-203ENST00000469739 PTCH1Q13635 1447 aa11.85□□□□□ -0.51
TOP3A-203ENST00000469739 CT47B1P0C2W7 299 aaPredicted RBP11.85□□□□□ -0.51
TOP3A-203ENST00000469739 ESCO1Q5FWF5 840 aa11.85□□□□□ -0.51
TOP3A-203ENST00000469739 ZBTB7BO15156 539 aaPredicted RBP11.84□□□□□ -0.51
TOP3A-203ENST00000469739 SLC4A2P04920 1241 aa11.84□□□□□ -0.51
TOP3A-203ENST00000469739 TSPYL4Q9UJ04 414 aa11.84□□□□□ -0.51
TOP3A-203ENST00000469739 CALD1Q05682 793 aaKnown RBP11.84□□□□□ -0.51
TOP3A-203ENST00000469739 RGPD8O14715 1765 aaPredicted RBP11.84□□□□□ -0.51
TOP3A-203ENST00000469739 ZNF142P52746 1687 aaPredicted RBP11.84□□□□□ -0.51
TOP3A-203ENST00000469739 G2E3Q7L622 706 aa11.83□□□□□ -0.51
TOP3A-203ENST00000469739 C16orf71Q8IYS4 520 aaPredicted RBP11.83□□□□□ -0.51
TOP3A-203ENST00000469739 CDK12Q9NYV4 1490 aaPredicted RBP11.83□□□□□ -0.52
TOP3A-203ENST00000469739 PLEKHG3A1L390 1219 aa11.83□□□□□ -0.52
TOP3A-203ENST00000469739 ALDH1L2Q3SY69 923 aa11.83□□□□□ -0.52
TOP3A-203ENST00000469739 SIRT2Q8IXJ6 389 aa11.83□□□□□ -0.52
TOP3A-203ENST00000469739 NALCNQ8IZF0 1738 aa11.83□□□□□ -0.52
TOP3A-203ENST00000469739 SMARCA5O60264 1052 aaPredicted RBP11.83□□□□□ -0.52
TOP3A-203ENST00000469739 LMOD3Q0VAK6 560 aa11.83□□□□□ -0.52
TOP3A-203ENST00000469739 FOXD4L1Q9NU39 408 aa11.83□□□□□ -0.52
TOP3A-203ENST00000469739 ZNF853P0CG23 659 aa11.82□□□□□ -0.52
TOP3A-203ENST00000469739 USP6P35125 1406 aa11.82□□□□□ -0.52
TOP3A-203ENST00000469739 ADAMTSL3P82987 1691 aa11.82□□□□□ -0.52
TOP3A-203ENST00000469739 CHD1LQ86WJ1 897 aa11.81□□□□□ -0.52
TOP3A-203ENST00000469739 TBX22Q9Y458 520 aa11.81□□□□□ -0.52
TOP3A-203ENST00000469739 AATKQ6ZMQ8 1374 aa11.81□□□□□ -0.52
TOP3A-203ENST00000469739 HDAC1Q13547 482 aaPredicted RBP11.81□□□□□ -0.52
TOP3A-203ENST00000469739 FAM43AQ8N2R8 423 aa11.81□□□□□ -0.52
TOP3A-203ENST00000469739 PSME1Q06323 249 aa11.81□□□□□ -0.52
TOP3A-203ENST00000469739 OTUD7AQ8TE49 926 aaPredicted RBP11.81□□□□□ -0.52
TOP3A-203ENST00000469739 SMC5Q8IY18 1101 aa11.8□□□□□ -0.52
TOP3A-203ENST00000469739 MEIS3Q99687 375 aa11.8□□□□□ -0.52
TOP3A-203ENST00000469739 LRRC59Q96AG4 307 aaKnown RBP11.8□□□□□ -0.52
TOP3A-203ENST00000469739 C22orf23Q9BZE7 217 aa11.8□□□□□ -0.52
TOP3A-203ENST00000469739 EIF2S2P20042 333 aaKnown RBP11.79□□□□□ -0.52
TOP3A-203ENST00000469739 ORAI2Q96SN7 254 aa11.79□□□□□ -0.52
TOP3A-203ENST00000469739 VSIG10Q8N0Z9 540 aa11.79□□□□□ -0.52
TOP3A-203ENST00000469739 TBC1D2Q9BYX2 928 aa11.79□□□□□ -0.52
TOP3A-203ENST00000469739 OVOS2A0A0J9YW53 1432 aa11.79□□□□□ -0.52
TOP3A-203ENST00000469739 OVOS2Q6IE36 1432 aa11.79□□□□□ -0.52
TOP3A-203ENST00000469739 TSHZ3Q63HK5 1081 aa11.79□□□□□ -0.52
TOP3A-203ENST00000469739 DDX17Q92841 729 aaKnown RBP11.79□□□□□ -0.52
TOP3A-203ENST00000469739 FMN2Q9NZ56 1722 aa11.78□□□□□ -0.52
TOP3A-203ENST00000469739 DLG5Q8TDM6 1919 aa11.78□□□□□ -0.52
TOP3A-203ENST00000469739 ANXA1P04083 346 aa11.78□□□□□ -0.52
TOP3A-203ENST00000469739 NUCB1Q02818 461 aa11.78□□□□□ -0.52
TOP3A-203ENST00000469739 BECN1Q14457 450 aa11.78□□□□□ -0.52
TOP3A-203ENST00000469739 TBC1D32Q96NH3 1257 aa11.78□□□□□ -0.52
TOP3A-203ENST00000469739 ZMYND15Q9H091 742 aa11.78□□□□□ -0.52
TOP3A-203ENST00000469739 PEAK1Q9H792 1746 aa11.78□□□□□ -0.52
TOP3A-203ENST00000469739 CHD2O14647 1828 aaKnown RBP11.77□□□□□ -0.52
TOP3A-203ENST00000469739 CHL1O00533 1208 aa11.77□□□□□ -0.52
TOP3A-203ENST00000469739 API5Q9BZZ5 524 aaKnown RBP11.77□□□□□ -0.52
TOP3A-203ENST00000469739 PHF8Q9UPP1 1060 aa11.77□□□□□ -0.52
TOP3A-203ENST00000469739 HOXC9P31274 260 aa11.77□□□□□ -0.53
TOP3A-203ENST00000469739 ANKLE2Q86XL3 938 aa11.77□□□□□ -0.53
TOP3A-203ENST00000469739 FKBP5Q13451 457 aaPredicted RBP11.77□□□□□ -0.53
TOP3A-203ENST00000469739 AAMPQ13685 434 aa11.77□□□□□ -0.53
TOP3A-203ENST00000469739 RBM42Q9BTD8 480 aaKnown RBP11.77□□□□□ -0.53
TOP3A-203ENST00000469739 SSH2Q76I76 1423 aa11.76□□□□□ -0.53
TOP3A-203ENST00000469739 PIK3C2AO00443 1686 aa11.76□□□□□ -0.53
TOP3A-203ENST00000469739 PDE4CQ08493 712 aa11.75□□□□□ -0.53
TOP3A-203ENST00000469739 PIK3R4Q99570 1358 aa11.75□□□□□ -0.53
TOP3A-203ENST00000469739 ABCC4O15439 1325 aa11.75□□□□□ -0.53
TOP3A-203ENST00000469739 ZC3H6P61129 1189 aaKnown RBP11.75□□□□□ -0.53
TOP3A-203ENST00000469739 IL17REQ8NFR9 667 aa11.75□□□□□ -0.53
TOP3A-203ENST00000469739 LGR6Q9HBX8 967 aa11.75□□□□□ -0.53
TOP3A-203ENST00000469739 EXOC6BQ9Y2D4 811 aa11.75□□□□□ -0.53
TOP3A-203ENST00000469739 FLT4P35916 1363 aa11.74□□□□□ -0.53
TOP3A-203ENST00000469739 RGPD1P0DJD0 1748 aa11.74□□□□□ -0.53
TOP3A-203ENST00000469739 MPRIPQ6WCQ1 1025 aa11.74□□□□□ -0.53
TOP3A-203ENST00000469739 PAXIP1Q6ZW49 1069 aaPredicted RBP11.74□□□□□ -0.53
TOP3A-203ENST00000469739 GZF1Q9H116 711 aaPredicted RBP11.74□□□□□ -0.53
TOP3A-203ENST00000469739 MSH6P52701 1360 aa11.74□□□□□ -0.53
TOP3A-203ENST00000469739 MARF1Q9Y4F3 1742 aaKnown RBP11.74□□□□□ -0.53
TOP3A-203ENST00000469739 KCNQ3O43525 872 aa11.74□□□□□ -0.53
TOP3A-203ENST00000469739 NBPF6Q5VWK0 638 aa11.74□□□□□ -0.53
TOP3A-203ENST00000469739 NBPF4Q96M43 638 aa11.74□□□□□ -0.53
TOP3A-203ENST00000469739 STK31Q9BXU1 1019 aa11.73□□□□□ -0.53
TOP3A-203ENST00000469739 ANKARQ7Z5J8 1434 aa11.73□□□□□ -0.53
TOP3A-203ENST00000469739 GNAT3A8MTJ3 354 aa11.73□□□□□ -0.53
TOP3A-203ENST00000469739 ARHGAP45Q92619 1136 aa11.73□□□□□ -0.53
TOP3A-203ENST00000469739 PHAXQ9H814 394 aaKnown RBP11.73□□□□□ -0.53
TOP3A-203ENST00000469739 USP31Q70CQ4 1352 aa11.73□□□□□ -0.53
TOP3A-203ENST00000469739 TTC21AQ8NDW8 1320 aa11.72□□□□□ -0.53
TOP3A-203ENST00000469739 TBC1D9Q6ZT07 1266 aa11.72□□□□□ -0.53
TOP3A-203ENST00000469739 SBNO1A3KN83 1393 aa11.72□□□□□ -0.53
TOP3A-203ENST00000469739 USP54Q70EL1 1684 aa11.72□□□□□ -0.53
TOP3A-203ENST00000469739 HSP90AA1P07900 732 aaKnown RBP11.71□□□□□ -0.53
TOP3A-203ENST00000469739 GAS2L2Q8NHY3 880 aa11.71□□□□□ -0.53
TOP3A-203ENST00000469739 CABLES1Q8TDN4 633 aa11.71□□□□□ -0.53
TOP3A-203ENST00000469739 GCC1Q96CN9 775 aa11.71□□□□□ -0.53
TOP3A-203ENST00000469739 GSPT1P15170 499 aaKnown RBP11.71□□□□□ -0.54
TOP3A-203ENST00000469739 CEP85Q6P2H3 762 aa11.71□□□□□ -0.54
TOP3A-203ENST00000469739 PROSER2Q86WR7 435 aaPredicted RBP11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms