RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 OTUD7AQ8TE49 926 aaPredicted RBP23.91■■□□□ 1.42
VIM-203ENST00000469543 MEIS3Q99687 375 aa23.91■■□□□ 1.42
VIM-203ENST00000469543 TRHP20396 242 aaPredicted RBP23.91■■□□□ 1.42
VIM-203ENST00000469543 SLC4A10Q6U841 1118 aa23.91■■□□□ 1.42
VIM-203ENST00000469543 TSPYL4Q9UJ04 414 aa23.9■■□□□ 1.42
VIM-203ENST00000469543 BMP2KLQ5H9B9 411 aa23.89■■□□□ 1.42
VIM-203ENST00000469543 USHBP1Q8N6Y0 703 aa23.89■■□□□ 1.42
VIM-203ENST00000469543 RTN4Q9NQC3 1192 aaKnown RBP23.89■■□□□ 1.42
VIM-203ENST00000469543 TOPAZ1Q8N9V7 1692 aa23.89■■□□□ 1.42
VIM-203ENST00000469543 SMARCA5O60264 1052 aaPredicted RBP23.89■■□□□ 1.41
VIM-203ENST00000469543 ABTB2Q8N961 1025 aa23.89■■□□□ 1.41
VIM-203ENST00000469543 RTF1Q92541 710 aaKnown RBP23.89■■□□□ 1.41
VIM-203ENST00000469543 INTS3Q68E01 1043 aaKnown RBP23.88■■□□□ 1.41
VIM-203ENST00000469543 TBC1D9Q6ZT07 1266 aa23.88■■□□□ 1.41
VIM-203ENST00000469543 RGS12O14924 1447 aa23.88■■□□□ 1.41
VIM-203ENST00000469543 CRB1P82279 1406 aa23.88■■□□□ 1.41
VIM-203ENST00000469543 BRPF3Q9ULD4 1205 aa23.88■■□□□ 1.41
VIM-203ENST00000469543 RBM42Q9BTD8 480 aaKnown RBP23.87■■□□□ 1.41
VIM-203ENST00000469543 GSPT1P15170 499 aaKnown RBP23.87■■□□□ 1.41
VIM-203ENST00000469543 CEP170BQ9Y4F5 1589 aaPredicted RBP23.86■■□□□ 1.41
VIM-203ENST00000469543 MSH6P52701 1360 aa23.86■■□□□ 1.41
VIM-203ENST00000469543 FLT4P35916 1363 aa23.86■■□□□ 1.41
VIM-203ENST00000469543 CHMP4BQ9H444 224 aaKnown RBP23.86■■□□□ 1.41
VIM-203ENST00000469543 TTC21AQ8NDW8 1320 aa23.85■■□□□ 1.41
VIM-203ENST00000469543 CD2BP2O95400 341 aaKnown RBP23.85■■□□□ 1.41
VIM-203ENST00000469543 PLEKHM2Q8IWE5 1019 aa23.85■■□□□ 1.41
VIM-203ENST00000469543 DCTPP1Q9H773 170 aa23.85■■□□□ 1.41
VIM-203ENST00000469543 KIF2CQ99661 725 aa23.84■■□□□ 1.41
VIM-203ENST00000469543 SBNO1A3KN83 1393 aa23.84■■□□□ 1.41
VIM-203ENST00000469543 DIP2AQ14689 1571 aa23.84■■□□□ 1.41
VIM-203ENST00000469543 ZBTB7CA1YPR0 619 aa23.84■■□□□ 1.41
VIM-203ENST00000469543 CEP85Q6P2H3 762 aa23.84■■□□□ 1.41
VIM-203ENST00000469543 HOXC9P31274 260 aa23.83■■□□□ 1.41
VIM-203ENST00000469543 ARHGAP23Q9P227 1491 aa23.83■■□□□ 1.41
VIM-203ENST00000469543 FOXD4L1Q9NU39 408 aa23.83■■□□□ 1.4
VIM-203ENST00000469543 SLIT1O75093 1534 aa23.82■■□□□ 1.4
VIM-203ENST00000469543 IGSF1Q8N6C5 1336 aa23.82■■□□□ 1.4
VIM-203ENST00000469543 RBM25P49756 843 aaKnown RBP23.82■■□□□ 1.4
VIM-203ENST00000469543 RGPD1P0DJD0 1748 aa23.81■■□□□ 1.4
VIM-203ENST00000469543 ANKRD44Q8N8A2 993 aa23.81■■□□□ 1.4
VIM-203ENST00000469543 NALCNQ8IZF0 1738 aa23.8■■□□□ 1.4
VIM-203ENST00000469543 IL17REQ8NFR9 667 aa23.8■■□□□ 1.4
VIM-203ENST00000469543 ARHGEF10O15013 1369 aa23.8■■□□□ 1.4
VIM-203ENST00000469543 KIAA0232Q92628 1395 aa23.8■■□□□ 1.4
VIM-203ENST00000469543 ATP10DQ9P241 1426 aa23.8■■□□□ 1.4
VIM-203ENST00000469543 SETD1BQ9UPS6 1966 aaKnown RBP23.79■■□□□ 1.4
VIM-203ENST00000469543 RTL1A6NKG5 1358 aa23.79■■□□□ 1.4
VIM-203ENST00000469543 ARXQ96QS3 562 aa23.79■■□□□ 1.4
VIM-203ENST00000469543 KDRP35968 1356 aa23.79■■□□□ 1.4
VIM-203ENST00000469543 HSCBQ8IWL3 235 aa23.78■■□□□ 1.4
VIM-203ENST00000469543 PIK3C2AO00443 1686 aa23.78■■□□□ 1.4
VIM-203ENST00000469543 XPCQ01831 940 aaPredicted RBP23.77■■□□□ 1.4
VIM-203ENST00000469543 GZF1Q9H116 711 aaPredicted RBP23.76■■□□□ 1.39
VIM-203ENST00000469543 PTPRCP08575 1304 aa23.76■■□□□ 1.39
VIM-203ENST00000469543 GNAT3A8MTJ3 354 aa23.76■■□□□ 1.39
VIM-203ENST00000469543 TSHZ3Q63HK5 1081 aa23.75■■□□□ 1.39
VIM-203ENST00000469543 GAS2L2Q8NHY3 880 aa23.75■■□□□ 1.39
VIM-203ENST00000469543 RPAP2Q8IXW5 612 aaPredicted RBP23.74■■□□□ 1.39
VIM-203ENST00000469543 FER1L4A9Z1Z3 1794 aa23.74■■□□□ 1.39
VIM-203ENST00000469543 FKBP5Q13451 457 aaPredicted RBP23.74■■□□□ 1.39
VIM-203ENST00000469543 HAP1P54257 671 aaPredicted RBP23.73■■□□□ 1.39
VIM-203ENST00000469543 ESCO1Q5FWF5 840 aa23.73■■□□□ 1.39
VIM-203ENST00000469543 TTC22Q5TAA0 569 aa23.73■■□□□ 1.39
VIM-203ENST00000469543 PHF8Q9UPP1 1060 aa23.73■■□□□ 1.39
VIM-203ENST00000469543 EXOC6BQ9Y2D4 811 aa23.73■■□□□ 1.39
VIM-203ENST00000469543 CDC45O75419 566 aa23.72■■□□□ 1.39
VIM-203ENST00000469543 SDSP20132 328 aa23.71■■□□□ 1.39
VIM-203ENST00000469543 FLIIQ13045 1269 aa23.71■■□□□ 1.39
VIM-203ENST00000469543 NBPF6Q5VWK0 638 aa23.71■■□□□ 1.39
VIM-203ENST00000469543 NBPF4Q96M43 638 aa23.71■■□□□ 1.39
VIM-203ENST00000469543 CHMP5Q9NZZ3 219 aa23.71■■□□□ 1.39
VIM-203ENST00000469543 MCM4P33991 863 aa23.7■■□□□ 1.39
VIM-203ENST00000469543 STK31Q9BXU1 1019 aa23.7■■□□□ 1.39
VIM-203ENST00000469543 LGR6Q9HBX8 967 aa23.7■■□□□ 1.39
VIM-203ENST00000469543 FMN2Q9NZ56 1722 aa23.7■■□□□ 1.38
VIM-203ENST00000469543 KIF24Q5T7B8 1368 aa23.7■■□□□ 1.38
VIM-203ENST00000469543 LRRC59Q96AG4 307 aaKnown RBP23.7■■□□□ 1.38
VIM-203ENST00000469543 PHAXQ9H814 394 aaKnown RBP23.69■■□□□ 1.38
VIM-203ENST00000469543 HSP90AB1P08238 724 aaKnown RBP23.69■■□□□ 1.38
VIM-203ENST00000469543 PNMA6EA0A0J9YXQ4 647 aa23.68■■□□□ 1.38
VIM-203ENST00000469543 PSME1Q06323 249 aa23.68■■□□□ 1.38
VIM-203ENST00000469543 EIF2S2P20042 333 aaKnown RBP23.67■■□□□ 1.38
VIM-203ENST00000469543 LMOD2Q6P5Q4 547 aa23.67■■□□□ 1.38
VIM-203ENST00000469543 ORAI2Q96SN7 254 aa23.67■■□□□ 1.38
VIM-203ENST00000469543 KCNQ3O43525 872 aa23.66■■□□□ 1.38
VIM-203ENST00000469543 ANKLE2Q86XL3 938 aa23.66■■□□□ 1.38
VIM-203ENST00000469543 SNX21Q969T3 373 aa23.66■■□□□ 1.38
VIM-203ENST00000469543 TAF7Q15545 349 aaPredicted RBP23.66■■□□□ 1.38
VIM-203ENST00000469543 DDIT3P35638 169 aa23.65■■□□□ 1.38
VIM-203ENST00000469543 XRN1Q8IZH2 1706 aaKnown RBP23.65■■□□□ 1.38
VIM-203ENST00000469543 NWD1Q149M9 1564 aa23.65■■□□□ 1.38
VIM-203ENST00000469543 ANXA1P04083 346 aa23.65■■□□□ 1.38
VIM-203ENST00000469543 HSP90AA1P07900 732 aaKnown RBP23.65■■□□□ 1.38
VIM-203ENST00000469543 CCDC30Q5VVM6 783 aa23.65■■□□□ 1.38
VIM-203ENST00000469543 CCT4P50991 539 aaKnown RBP23.64■■□□□ 1.38
VIM-203ENST00000469543 MAP3K5Q99683 1374 aa23.63■■□□□ 1.37
VIM-203ENST00000469543 GNAI2P04899 355 aa23.63■■□□□ 1.37
VIM-203ENST00000469543 USP26Q9BXU7 913 aa23.62■■□□□ 1.37
VIM-203ENST00000469543 MARF1Q9Y4F3 1742 aaKnown RBP23.62■■□□□ 1.37
VIM-203ENST00000469543 TNPO1Q92973 898 aaKnown RBP23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms