RNA–Protein interactions for RNA: ENST00000447439.6

KLHL3-202, Transcript of kelch like family member 3, humanhuman

TSL 1 (best)

Gene KLHL3, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-202ENST00000447439 TNPO1Q92973 898 aaKnown RBP11.74□□□□□ -0.53
KLHL3-202ENST00000447439 RGS12O14924 1447 aa11.74□□□□□ -0.53
KLHL3-202ENST00000447439 TRHP20396 242 aaPredicted RBP11.73□□□□□ -0.53
KLHL3-202ENST00000447439 HDGFP51858 240 aaKnown RBP11.73□□□□□ -0.53
KLHL3-202ENST00000447439 CEP85Q6P2H3 762 aa11.73□□□□□ -0.53
KLHL3-202ENST00000447439 GAS2L2Q8NHY3 880 aa11.73□□□□□ -0.53
KLHL3-202ENST00000447439 AMOTL2Q9Y2J4 779 aa11.73□□□□□ -0.53
KLHL3-202ENST00000447439 PTPRUQ92729 1446 aa11.73□□□□□ -0.53
KLHL3-202ENST00000447439 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.73□□□□□ -0.53
KLHL3-202ENST00000447439 NGDNQ8NEJ9 315 aaKnown RBP11.73□□□□□ -0.53
KLHL3-202ENST00000447439 DCTPP1Q9H773 170 aa11.73□□□□□ -0.53
KLHL3-202ENST00000447439 C3P01024 1663 aa11.73□□□□□ -0.53
KLHL3-202ENST00000447439 MON2Q7Z3U7 1717 aa11.73□□□□□ -0.53
KLHL3-202ENST00000447439 RIMS1Q86UR5 1692 aaKnown RBP11.73□□□□□ -0.53
KLHL3-202ENST00000447439 CDC45O75419 566 aa11.73□□□□□ -0.53
KLHL3-202ENST00000447439 XRCC6P12956 609 aaKnown RBP eCLIP11.73□□□□□ -0.53
KLHL3-202ENST00000447439 INTS3Q68E01 1043 aaKnown RBP11.73□□□□□ -0.53
KLHL3-202ENST00000447439 TSPYL4Q9UJ04 414 aa11.73□□□□□ -0.53
KLHL3-202ENST00000447439 PEAK1Q9H792 1746 aa11.72□□□□□ -0.53
KLHL3-202ENST00000447439 DDIT3P35638 169 aa11.72□□□□□ -0.53
KLHL3-202ENST00000447439 TECPR2O15040 1411 aa11.72□□□□□ -0.53
KLHL3-202ENST00000447439 USP6P35125 1406 aa11.72□□□□□ -0.53
KLHL3-202ENST00000447439 AMPHP49418 695 aa11.72□□□□□ -0.53
KLHL3-202ENST00000447439 ANKRD44Q8N8A2 993 aa11.72□□□□□ -0.53
KLHL3-202ENST00000447439 CHMP4BQ9H444 224 aaKnown RBP11.72□□□□□ -0.53
KLHL3-202ENST00000447439 OVOS2A0A0J9YW53 1432 aa11.71□□□□□ -0.53
KLHL3-202ENST00000447439 OVOS2Q6IE36 1432 aa11.71□□□□□ -0.53
KLHL3-202ENST00000447439 ATP10DQ9P241 1426 aa11.71□□□□□ -0.53
KLHL3-202ENST00000447439 GOLGA6L3A6NEY3 463 aa11.71□□□□□ -0.53
KLHL3-202ENST00000447439 TTC22Q5TAA0 569 aa11.71□□□□□ -0.53
KLHL3-202ENST00000447439 USHBP1Q8N6Y0 703 aa11.71□□□□□ -0.53
KLHL3-202ENST00000447439 SNX21Q969T3 373 aa11.71□□□□□ -0.53
KLHL3-202ENST00000447439 EYA1Q99502 592 aa11.71□□□□□ -0.53
KLHL3-202ENST00000447439 ITSN1Q15811 1721 aa11.71□□□□□ -0.54
KLHL3-202ENST00000447439 SSFA2P28290 1259 aa11.71□□□□□ -0.54
KLHL3-202ENST00000447439 AKAP12Q02952 1782 aa11.71□□□□□ -0.54
KLHL3-202ENST00000447439 RTL1A6NKG5 1358 aa11.7□□□□□ -0.54
KLHL3-202ENST00000447439 PLEKHG3A1L390 1219 aa11.7□□□□□ -0.54
KLHL3-202ENST00000447439 SDSP20132 328 aa11.7□□□□□ -0.54
KLHL3-202ENST00000447439 C14orf37Q86TY3 774 aa11.7□□□□□ -0.54
KLHL3-202ENST00000447439 RTF1Q92541 710 aaKnown RBP11.7□□□□□ -0.54
KLHL3-202ENST00000447439 SIRT1Q96EB6 747 aa11.7□□□□□ -0.54
KLHL3-202ENST00000447439 CRB1P82279 1406 aa11.7□□□□□ -0.54
KLHL3-202ENST00000447439 K7ELQ4 463 aaPredicted RBP11.7□□□□□ -0.54
KLHL3-202ENST00000447439 EXOC6BQ9Y2D4 811 aa11.7□□□□□ -0.54
KLHL3-202ENST00000447439 NCOA3Q9Y6Q9 1424 aa11.69□□□□□ -0.54
KLHL3-202ENST00000447439 ZBTB7CA1YPR0 619 aa11.69□□□□□ -0.54
KLHL3-202ENST00000447439 RRAGDQ9NQL2 400 aaPredicted RBP11.69□□□□□ -0.54
KLHL3-202ENST00000447439 NLRP6P59044 892 aa11.69□□□□□ -0.54
KLHL3-202ENST00000447439 CHAMP1Q96JM3 812 aa11.68□□□□□ -0.54
KLHL3-202ENST00000447439 NRKQ7Z2Y5 1582 aa11.68□□□□□ -0.54
KLHL3-202ENST00000447439 CEP170BQ9Y4F5 1589 aaPredicted RBP11.68□□□□□ -0.54
KLHL3-202ENST00000447439 UBR1Q8IWV7 1749 aa11.68□□□□□ -0.54
KLHL3-202ENST00000447439 PKP1Q13835 747 aa11.67□□□□□ -0.54
KLHL3-202ENST00000447439 L1TD1Q5T7N2 865 aaKnown RBP11.67□□□□□ -0.54
KLHL3-202ENST00000447439 FSD2A1L4K1 749 aa11.67□□□□□ -0.54
KLHL3-202ENST00000447439 RAB3GAP1Q15042 981 aa11.67□□□□□ -0.54
KLHL3-202ENST00000447439 EID1Q9Y6B2 187 aa11.67□□□□□ -0.54
KLHL3-202ENST00000447439 GAS2L3Q86XJ1 694 aa11.66□□□□□ -0.54
KLHL3-202ENST00000447439 RPAP2Q8IXW5 612 aaPredicted RBP11.66□□□□□ -0.54
KLHL3-202ENST00000447439 USP26Q9BXU7 913 aa11.66□□□□□ -0.54
KLHL3-202ENST00000447439 PLEKHG1Q9ULL1 1385 aa11.66□□□□□ -0.54
KLHL3-202ENST00000447439 FKBP5Q13451 457 aaPredicted RBP11.66□□□□□ -0.54
KLHL3-202ENST00000447439 USP31Q70CQ4 1352 aa11.65□□□□□ -0.54
KLHL3-202ENST00000447439 PNMA6EA0A0J9YXQ4 647 aa11.65□□□□□ -0.54
KLHL3-202ENST00000447439 DDX11L8A8MPP1 907 aa11.65□□□□□ -0.54
KLHL3-202ENST00000447439 FOXD4L5Q5VV16 416 aaPredicted RBP11.65□□□□□ -0.54
KLHL3-202ENST00000447439 FOXD4L4Q8WXT5 416 aaPredicted RBP11.65□□□□□ -0.54
KLHL3-202ENST00000447439 KIAA0232Q92628 1395 aa11.65□□□□□ -0.54
KLHL3-202ENST00000447439 PTPRCP08575 1304 aa11.65□□□□□ -0.54
KLHL3-202ENST00000447439 KCNA6P17658 529 aa11.65□□□□□ -0.54
KLHL3-202ENST00000447439 NOL8Q76FK4 1167 aaKnown RBP11.65□□□□□ -0.54
KLHL3-202ENST00000447439 ZGPATQ8N5A5 531 aaKnown RBP11.65□□□□□ -0.54
KLHL3-202ENST00000447439 SSH2Q76I76 1423 aa11.64□□□□□ -0.55
KLHL3-202ENST00000447439 FLT4P35916 1363 aa11.64□□□□□ -0.55
KLHL3-202ENST00000447439 FAM43AQ8N2R8 423 aa11.64□□□□□ -0.55
KLHL3-202ENST00000447439 FLIIQ13045 1269 aa11.63□□□□□ -0.55
KLHL3-202ENST00000447439 ABTB2Q8N961 1025 aa11.63□□□□□ -0.55
KLHL3-202ENST00000447439 IL17REQ8NFR9 667 aa11.63□□□□□ -0.55
KLHL3-202ENST00000447439 SBNO1A3KN83 1393 aa11.63□□□□□ -0.55
KLHL3-202ENST00000447439 ARHGEF10O15013 1369 aa11.63□□□□□ -0.55
KLHL3-202ENST00000447439 TOPAZ1Q8N9V7 1692 aa11.63□□□□□ -0.55
KLHL3-202ENST00000447439 EIF5BO60841 1220 aaKnown RBP11.63□□□□□ -0.55
KLHL3-202ENST00000447439 GBP4Q96PP9 640 aa11.63□□□□□ -0.55
KLHL3-202ENST00000447439 STK31Q9BXU1 1019 aa11.63□□□□□ -0.55
KLHL3-202ENST00000447439 KIF24Q5T7B8 1368 aa11.63□□□□□ -0.55
KLHL3-202ENST00000447439 HOXC9P31274 260 aa11.63□□□□□ -0.55
KLHL3-202ENST00000447439 PHAXQ9H814 394 aaKnown RBP11.63□□□□□ -0.55
KLHL3-202ENST00000447439 GRPEL1Q9HAV7 217 aa11.63□□□□□ -0.55
KLHL3-202ENST00000447439 IGSF1Q8N6C5 1336 aa11.62□□□□□ -0.55
KLHL3-202ENST00000447439 MAP4K4O95819 1239 aaPredicted RBP11.62□□□□□ -0.55
KLHL3-202ENST00000447439 EIF2S2P20042 333 aaKnown RBP11.62□□□□□ -0.55
KLHL3-202ENST00000447439 PDE1AP54750 535 aa11.62□□□□□ -0.55
KLHL3-202ENST00000447439 RILPL2Q969X0 211 aa11.62□□□□□ -0.55
KLHL3-202ENST00000447439 IL1RAPL2Q9NP60 686 aa11.62□□□□□ -0.55
KLHL3-202ENST00000447439 LRRFIP2Q9Y608 721 aaKnown RBP11.62□□□□□ -0.55
KLHL3-202ENST00000447439 ANXA1P04083 346 aa11.62□□□□□ -0.55
KLHL3-202ENST00000447439 GNAI2P04899 355 aa11.62□□□□□ -0.55
KLHL3-202ENST00000447439 MCTP1Q6DN14 999 aa11.62□□□□□ -0.55
KLHL3-202ENST00000447439 RGPD8O14715 1765 aaPredicted RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms