RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 CFAP45Q9UL16 551 aa13.11□□□□□ -0.31
SCN4A-201ENST00000435607 LRRFIP2Q9Y608 721 aaKnown RBP13.11□□□□□ -0.31
SCN4A-201ENST00000435607 CABP2Q9NPB3 220 aa13.11□□□□□ -0.31
SCN4A-201ENST00000435607 CEBPZQ03701 1054 aaKnown RBP13.11□□□□□ -0.31
SCN4A-201ENST00000435607 TSPY26PQ9H489 355 aa13.11□□□□□ -0.31
SCN4A-201ENST00000435607 AKAP2Q9Y2D5 859 aa13.11□□□□□ -0.31
SCN4A-201ENST00000435607 HSP90AB3PQ58FF7 597 aa13.1□□□□□ -0.31
SCN4A-201ENST00000435607 AIDAQ96BJ3 306 aa13.1□□□□□ -0.31
SCN4A-201ENST00000435607 MYO1BO43795 1136 aa13.1□□□□□ -0.31
SCN4A-201ENST00000435607 IMMTQ16891 758 aaKnown RBP13.1□□□□□ -0.31
SCN4A-201ENST00000435607 DZIP1Q86YF9 867 aaKnown RBP13.1□□□□□ -0.31
SCN4A-201ENST00000435607 TTC21AQ8NDW8 1320 aa13.1□□□□□ -0.31
SCN4A-201ENST00000435607 CCDC192P0DO97 292 aa13.1□□□□□ -0.31
SCN4A-201ENST00000435607 DDX23Q9BUQ8 820 aaKnown RBP13.1□□□□□ -0.31
SCN4A-201ENST00000435607 NASPP49321 788 aaPredicted RBP13.1□□□□□ -0.31
SCN4A-201ENST00000435607 ZBED9Q6R2W3 1325 aa13.1□□□□□ -0.31
SCN4A-201ENST00000435607 FERP16591 822 aa13.1□□□□□ -0.31
SCN4A-201ENST00000435607 NEK4P51957 841 aa13.1□□□□□ -0.31
SCN4A-201ENST00000435607 TMEM266Q2M3C6 531 aa13.1□□□□□ -0.31
SCN4A-201ENST00000435607 CAVIN1Q6NZI2 390 aaKnown RBP13.09□□□□□ -0.31
SCN4A-201ENST00000435607 MRPS9P82933 396 aaKnown RBP13.09□□□□□ -0.31
SCN4A-201ENST00000435607 TSNARE1Q96NA8 513 aa13.09□□□□□ -0.31
SCN4A-201ENST00000435607 LRRCC1Q9C099 1032 aa13.09□□□□□ -0.31
SCN4A-201ENST00000435607 ABCF2Q9UG63 623 aa13.09□□□□□ -0.31
SCN4A-201ENST00000435607 CCDC7Q96M83 1385 aa13.09□□□□□ -0.31
SCN4A-201ENST00000435607 CCDC196A0A1B0GTZ2 297 aa13.09□□□□□ -0.31
SCN4A-201ENST00000435607 IFIT1P09914 478 aaKnown RBP13.09□□□□□ -0.31
SCN4A-201ENST00000435607 CTNNA2P26232 953 aa13.09□□□□□ -0.31
SCN4A-201ENST00000435607 KRT85P78386 507 aa13.09□□□□□ -0.31
SCN4A-201ENST00000435607 SIL1Q9H173 461 aa13.09□□□□□ -0.31
SCN4A-201ENST00000435607 NOP2P46087 812 aaKnown RBP13.08□□□□□ -0.31
SCN4A-201ENST00000435607 GCC1Q96CN9 775 aa13.08□□□□□ -0.31
SCN4A-201ENST00000435607 DYDC1Q8WWB3 177 aa13.08□□□□□ -0.32
SCN4A-201ENST00000435607 CEP63Q96MT8 703 aa13.08□□□□□ -0.32
SCN4A-201ENST00000435607 TNMDQ9H2S6 317 aa13.08□□□□□ -0.32
SCN4A-201ENST00000435607 SCAPERQ9BY12 1400 aa13.08□□□□□ -0.32
SCN4A-201ENST00000435607 SMTNL1A8MU46 457 aa13.08□□□□□ -0.32
SCN4A-201ENST00000435607 MAP2K1Q02750 393 aaPredicted RBP13.08□□□□□ -0.32
SCN4A-201ENST00000435607 NFKBIBQ15653 356 aa13.08□□□□□ -0.32
SCN4A-201ENST00000435607 LARP1Q6PKG0 1096 aaKnown RBP13.08□□□□□ -0.32
SCN4A-201ENST00000435607 ZNF444Q8N0Y2 327 aaPredicted RBP13.08□□□□□ -0.32
SCN4A-201ENST00000435607 CCDC96Q2M329 555 aa13.08□□□□□ -0.32
SCN4A-201ENST00000435607 STXBP4Q6ZWJ1 553 aa13.08□□□□□ -0.32
SCN4A-201ENST00000435607 CADPSQ9ULU8 1353 aa13.08□□□□□ -0.32
SCN4A-201ENST00000435607 FKBP15Q5T1M5 1219 aa13.08□□□□□ -0.32
SCN4A-201ENST00000435607 CCDC148Q8NFR7 591 aa13.08□□□□□ -0.32
SCN4A-201ENST00000435607 BAG4O95429 457 aaKnown RBP13.08□□□□□ -0.32
SCN4A-201ENST00000435607 GSTTP1A0A1W2PQM5 241 aa13.07□□□□□ -0.32
SCN4A-201ENST00000435607 BTBD11A6QL63 1104 aa13.07□□□□□ -0.32
SCN4A-201ENST00000435607 EXOC6Q8TAG9 804 aa13.07□□□□□ -0.32
SCN4A-201ENST00000435607 PHAXQ9H814 394 aaKnown RBP13.07□□□□□ -0.32
SCN4A-201ENST00000435607 USP8P40818 1118 aa13.07□□□□□ -0.32
SCN4A-201ENST00000435607 VTI1AQ96AJ9 217 aa13.07□□□□□ -0.32
SCN4A-201ENST00000435607 MYOM3Q5VTT5 1437 aa13.07□□□□□ -0.32
SCN4A-201ENST00000435607 CNTLNQ9NXG0 1405 aa13.07□□□□□ -0.32
SCN4A-201ENST00000435607 SPA17Q15506 151 aa13.07□□□□□ -0.32
SCN4A-201ENST00000435607 TWISTNBQ3B726 338 aaPredicted RBP13.07□□□□□ -0.32
SCN4A-201ENST00000435607 TMOD3Q9NYL9 352 aa13.07□□□□□ -0.32
SCN4A-201ENST00000435607 METTL24Q5JXM2 366 aa13.06□□□□□ -0.32
SCN4A-201ENST00000435607 BLOC1S2Q6QNY1 142 aa13.06□□□□□ -0.32
SCN4A-201ENST00000435607 UTP14AQ9BVJ6 771 aaKnown RBP13.06□□□□□ -0.32
SCN4A-201ENST00000435607 IDH1O75874 414 aaKnown RBP13.06□□□□□ -0.32
SCN4A-201ENST00000435607 RGS22Q8NE09 1264 aa13.06□□□□□ -0.32
SCN4A-201ENST00000435607 TAOK3Q9H2K8 898 aa13.06□□□□□ -0.32
SCN4A-201ENST00000435607 GCOM1H8Y6P7 765 aaPredicted RBP13.06□□□□□ -0.32
SCN4A-201ENST00000435607 FIBPO43427 364 aa13.06□□□□□ -0.32
SCN4A-201ENST00000435607 MYZAPP0CAP1 466 aa13.06□□□□□ -0.32
SCN4A-201ENST00000435607 ARHGAP5Q13017 1502 aa13.06□□□□□ -0.32
SCN4A-201ENST00000435607 SLU7O95391 586 aaKnown RBP13.05□□□□□ -0.32
SCN4A-201ENST00000435607 WDR33Q9C0J8 1336 aaKnown RBP13.05□□□□□ -0.32
SCN4A-201ENST00000435607 KIF4AO95239 1232 aa13.05□□□□□ -0.32
SCN4A-201ENST00000435607 KCNH5Q8NCM2 988 aa13.05□□□□□ -0.32
SCN4A-201ENST00000435607 SREK1Q8WXA9 508 aaKnown RBP13.05□□□□□ -0.32
SCN4A-201ENST00000435607 PSMD1Q99460 953 aa13.05□□□□□ -0.32
SCN4A-201ENST00000435607 PLCD3Q8N3E9 789 aa13.05□□□□□ -0.32
SCN4A-201ENST00000435607 SLC4A2P04920 1241 aa13.05□□□□□ -0.32
SCN4A-201ENST00000435607 STK3Q13188 491 aa13.05□□□□□ -0.32
SCN4A-201ENST00000435607 CABP5Q9NP86 173 aa13.05□□□□□ -0.32
SCN4A-201ENST00000435607 CACNA2D4Q7Z3S7 1137 aa13.05□□□□□ -0.32
SCN4A-201ENST00000435607 DMRT2Q9Y5R5 561 aa13.05□□□□□ -0.32
SCN4A-201ENST00000435607 AACSQ86V21 672 aa13.04□□□□□ -0.32
SCN4A-201ENST00000435607 B4DLN1 442 aa13.04□□□□□ -0.32
SCN4A-201ENST00000435607 MRPL12P52815 198 aaKnown RBP13.04□□□□□ -0.32
SCN4A-201ENST00000435607 IQCA1Q86XH1 822 aa13.04□□□□□ -0.32
SCN4A-201ENST00000435607 CTCFLQ8NI51 663 aaPredicted RBP13.04□□□□□ -0.32
SCN4A-201ENST00000435607 PRKAR2BP31323 418 aa13.04□□□□□ -0.32
SCN4A-201ENST00000435607 LARP1BQ659C4 914 aaKnown RBP13.04□□□□□ -0.32
SCN4A-201ENST00000435607 UBA5Q9GZZ9 404 aa13.04□□□□□ -0.32
SCN4A-201ENST00000435607 BCL11BQ9C0K0 894 aaPredicted RBP13.04□□□□□ -0.32
SCN4A-201ENST00000435607 U3KPZ7 1027 aaPredicted RBP13.04□□□□□ -0.32
SCN4A-201ENST00000435607 TRAF1Q13077 416 aa13.03□□□□□ -0.32
SCN4A-201ENST00000435607 CCDC12Q8WUD4 166 aaPredicted RBP13.03□□□□□ -0.32
SCN4A-201ENST00000435607 CTNNBL1Q8WYA6 563 aaPredicted RBP13.03□□□□□ -0.32
SCN4A-201ENST00000435607 NGLY1Q96IV0 654 aa13.03□□□□□ -0.32
SCN4A-201ENST00000435607 ZSCAN31Q96LW9 406 aaPredicted RBP13.03□□□□□ -0.32
SCN4A-201ENST00000435607 CCDC88BA6NC98 1476 aa13.03□□□□□ -0.32
SCN4A-201ENST00000435607 MRE11P49959 708 aa13.03□□□□□ -0.32
SCN4A-201ENST00000435607 SPATA24Q86W54 205 aa13.03□□□□□ -0.32
SCN4A-201ENST00000435607 RFX1P22670 979 aa13.03□□□□□ -0.32
SCN4A-201ENST00000435607 NCBP1Q09161 790 aaKnown RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms