RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 CFAP44Q96MT7 982 aa10.5□□□□□ -0.73
CD44-208ENST00000428726 CCDC9Q9Y3X0 531 aaKnown RBP10.5□□□□□ -0.73
CD44-208ENST00000428726 LRRC7Q96NW7 1537 aa10.5□□□□□ -0.73
CD44-208ENST00000428726 MAP2P11137 1827 aaKnown RBP10.5□□□□□ -0.73
CD44-208ENST00000428726 FOXD4L6Q3SYB3 417 aaPredicted RBP10.5□□□□□ -0.73
CD44-208ENST00000428726 FOXD4L3Q6VB84 417 aaPredicted RBP10.5□□□□□ -0.73
CD44-208ENST00000428726 TBC1D2Q9BYX2 928 aa10.5□□□□□ -0.73
CD44-208ENST00000428726 PHAXQ9H814 394 aaKnown RBP10.5□□□□□ -0.73
CD44-208ENST00000428726 UBR1Q8IWV7 1749 aa10.5□□□□□ -0.73
CD44-208ENST00000428726 CHRNA2Q15822 529 aa10.5□□□□□ -0.73
CD44-208ENST00000428726 AATKQ6ZMQ8 1374 aa10.49□□□□□ -0.73
CD44-208ENST00000428726 AIMP1Q12904 312 aaKnown RBP10.49□□□□□ -0.73
CD44-208ENST00000428726 CHD1LQ86WJ1 897 aa10.49□□□□□ -0.73
CD44-208ENST00000428726 CHAMP1Q96JM3 812 aa10.49□□□□□ -0.73
CD44-208ENST00000428726 ZNF692Q9BU19 519 aaPredicted RBP10.49□□□□□ -0.73
CD44-208ENST00000428726 C22orf23Q9BZE7 217 aa10.49□□□□□ -0.73
CD44-208ENST00000428726 IL1RAPL2Q9NP60 686 aa10.49□□□□□ -0.73
CD44-208ENST00000428726 USP35Q9P2H5 1018 aa10.49□□□□□ -0.73
CD44-208ENST00000428726 SRCAPQ6ZRS2 3230 aa10.49□□□□□ -0.73
CD44-208ENST00000428726 MON2Q7Z3U7 1717 aa10.48□□□□□ -0.73
CD44-208ENST00000428726 CDK12Q9NYV4 1490 aaPredicted RBP10.48□□□□□ -0.73
CD44-208ENST00000428726 A0A0G2JS52 829 aa10.48□□□□□ -0.73
CD44-208ENST00000428726 ZBTB22O15209 634 aa10.48□□□□□ -0.73
CD44-208ENST00000428726 CD2BP2O95400 341 aaKnown RBP10.48□□□□□ -0.73
CD44-208ENST00000428726 NBPF6Q5VWK0 638 aa10.48□□□□□ -0.73
CD44-208ENST00000428726 NBPF4Q96M43 638 aa10.48□□□□□ -0.73
CD44-208ENST00000428726 ADAMTS13Q76LX8 1427 aa10.48□□□□□ -0.73
CD44-208ENST00000428726 KIF16BQ96L93 1317 aa10.48□□□□□ -0.73
CD44-208ENST00000428726 HSP90AA1P07900 732 aaKnown RBP10.47□□□□□ -0.73
CD44-208ENST00000428726 CALD1Q05682 793 aaKnown RBP10.47□□□□□ -0.73
CD44-208ENST00000428726 LARP6Q9BRS8 491 aaKnown RBP10.47□□□□□ -0.73
CD44-208ENST00000428726 AKAP12Q02952 1782 aa10.47□□□□□ -0.73
CD44-208ENST00000428726 ITSN1Q15811 1721 aa10.47□□□□□ -0.73
CD44-208ENST00000428726 SLC39A6Q13433 755 aa10.47□□□□□ -0.73
CD44-208ENST00000428726 IL17REQ8NFR9 667 aa10.47□□□□□ -0.73
CD44-208ENST00000428726 IFT57Q9NWB7 429 aa10.47□□□□□ -0.73
CD44-208ENST00000428726 PLEKHG1Q9ULL1 1385 aa10.46□□□□□ -0.73
CD44-208ENST00000428726 PHF8Q9UPP1 1060 aa10.46□□□□□ -0.73
CD44-208ENST00000428726 VIRMAQ69YN4 1812 aaKnown RBP10.46□□□□□ -0.74
CD44-208ENST00000428726 ALDH1L2Q3SY69 923 aa10.46□□□□□ -0.74
CD44-208ENST00000428726 HOXC9P31274 260 aa10.45□□□□□ -0.74
CD44-208ENST00000428726 DDX54Q8TDD1 881 aaKnown RBP10.45□□□□□ -0.74
CD44-208ENST00000428726 C3P01024 1663 aa10.45□□□□□ -0.74
CD44-208ENST00000428726 PROSER2Q86WR7 435 aaPredicted RBP10.45□□□□□ -0.74
CD44-208ENST00000428726 ZNF330Q9Y3S2 320 aaPredicted RBP10.45□□□□□ -0.74
CD44-208ENST00000428726 AXIN2Q9Y2T1 843 aa10.44□□□□□ -0.74
CD44-208ENST00000428726 RILPL2Q969X0 211 aa10.44□□□□□ -0.74
CD44-208ENST00000428726 LMOD3Q0VAK6 560 aa10.44□□□□□ -0.74
CD44-208ENST00000428726 ANKLE2Q86XL3 938 aa10.44□□□□□ -0.74
CD44-208ENST00000428726 UTRNP46939 3433 aa10.43□□□□□ -0.74
CD44-208ENST00000428726 PNMA6EA0A0J9YXQ4 647 aa10.43□□□□□ -0.74
CD44-208ENST00000428726 ZNF853P0CG23 659 aa10.43□□□□□ -0.74
CD44-208ENST00000428726 NUCB1Q02818 461 aa10.43□□□□□ -0.74
CD44-208ENST00000428726 TBC1D9Q6ZT07 1266 aa10.43□□□□□ -0.74
CD44-208ENST00000428726 NUTM1Q86Y26 1132 aa10.43□□□□□ -0.74
CD44-208ENST00000428726 TBC1D32Q96NH3 1257 aa10.43□□□□□ -0.74
CD44-208ENST00000428726 MSH6P52701 1360 aa10.43□□□□□ -0.74
CD44-208ENST00000428726 CSB-PGBD3P0DP91 1061 aa10.43□□□□□ -0.74
CD44-208ENST00000428726 PRKCSHP14314 528 aaPredicted RBP10.43□□□□□ -0.74
CD44-208ENST00000428726 MYL6BP14649 208 aa10.43□□□□□ -0.74
CD44-208ENST00000428726 GSPT1P15170 499 aaKnown RBP10.43□□□□□ -0.74
CD44-208ENST00000428726 BRPF1P55201 1214 aaPredicted RBP10.43□□□□□ -0.74
CD44-208ENST00000428726 SMC5Q8IY18 1101 aa10.43□□□□□ -0.74
CD44-208ENST00000428726 NLRP2Q9NX02 1062 aa10.43□□□□□ -0.74
CD44-208ENST00000428726 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.42□□□□□ -0.74
CD44-208ENST00000428726 PLEKHG3A1L390 1219 aa10.42□□□□□ -0.74
CD44-208ENST00000428726 TRIM6-TRIM34B2RNG4 842 aa10.42□□□□□ -0.74
CD44-208ENST00000428726 CHL1O00533 1208 aa10.42□□□□□ -0.74
CD44-208ENST00000428726 HDAC1Q13547 482 aaPredicted RBP10.42□□□□□ -0.74
CD44-208ENST00000428726 USP6P35125 1406 aa10.42□□□□□ -0.74
CD44-208ENST00000428726 STK31Q9BXU1 1019 aa10.42□□□□□ -0.74
CD44-208ENST00000428726 RIMS1Q86UR5 1692 aaKnown RBP10.42□□□□□ -0.74
CD44-208ENST00000428726 HDGFL1Q5TGJ6 251 aa10.42□□□□□ -0.74
CD44-208ENST00000428726 ZNF530Q6P9A1 599 aaPredicted RBP10.42□□□□□ -0.74
CD44-208ENST00000428726 LRRFIP2Q9Y608 721 aaKnown RBP10.42□□□□□ -0.74
CD44-208ENST00000428726 TOPAZ1Q8N9V7 1692 aa10.41□□□□□ -0.74
CD44-208ENST00000428726 TBX22Q9Y458 520 aa10.41□□□□□ -0.74
CD44-208ENST00000428726 GNAT3A8MTJ3 354 aa10.41□□□□□ -0.74
CD44-208ENST00000428726 HSP90AB1P08238 724 aaKnown RBP10.41□□□□□ -0.74
CD44-208ENST00000428726 BECN1Q14457 450 aa10.41□□□□□ -0.74
CD44-208ENST00000428726 PROSER3Q2NL68 480 aa10.41□□□□□ -0.74
CD44-208ENST00000428726 CHPF2Q9P2E5 772 aa10.41□□□□□ -0.74
CD44-208ENST00000428726 TAOK2Q9UL54 1235 aa10.41□□□□□ -0.74
CD44-208ENST00000428726 NRKQ7Z2Y5 1582 aa10.4□□□□□ -0.74
CD44-208ENST00000428726 FLIIQ13045 1269 aa10.4□□□□□ -0.74
CD44-208ENST00000428726 SLIT1O75093 1534 aa10.4□□□□□ -0.74
CD44-208ENST00000428726 ARHGAP45Q92619 1136 aa10.4□□□□□ -0.74
CD44-208ENST00000428726 API5Q9BZZ5 524 aaKnown RBP10.4□□□□□ -0.74
CD44-208ENST00000428726 CHMP4BQ9H444 224 aaKnown RBP10.4□□□□□ -0.74
CD44-208ENST00000428726 ARHGAP23Q9P227 1491 aa10.39□□□□□ -0.75
CD44-208ENST00000428726 TEFQ10587 303 aa10.39□□□□□ -0.75
CD44-208ENST00000428726 CWF19L2Q2TBE0 894 aaKnown RBP10.39□□□□□ -0.75
CD44-208ENST00000428726 CEP85Q6P2H3 762 aa10.39□□□□□ -0.75
CD44-208ENST00000428726 KLHDC4Q8TBB5 520 aa10.39□□□□□ -0.75
CD44-208ENST00000428726 SIL1Q9H173 461 aa10.39□□□□□ -0.75
CD44-208ENST00000428726 OVOS2A0A0J9YW53 1432 aa10.39□□□□□ -0.75
CD44-208ENST00000428726 TAF7Q15545 349 aaPredicted RBP10.39□□□□□ -0.75
CD44-208ENST00000428726 OVOS2Q6IE36 1432 aa10.39□□□□□ -0.75
CD44-208ENST00000428726 KAT6BQ8WYB5 2073 aa10.39□□□□□ -0.75
CD44-208ENST00000428726 DLG5Q8TDM6 1919 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms