RNA–Protein interactions for RNA: ENST00000428014.1

SMC1A-203, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 868 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-203ENST00000428014 AMER1Q5JTC6 1135 aaPredicted RBP12.52□□□□□ -0.41
SMC1A-203ENST00000428014 NLRP2Q9NX02 1062 aa12.52□□□□□ -0.41
SMC1A-203ENST00000428014 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.52□□□□□ -0.412e-7■□□□□ 10.9
SMC1A-203ENST00000428014 SOX12O15370 315 aa12.51□□□□□ -0.41
SMC1A-203ENST00000428014 BCL11BQ9C0K0 894 aaPredicted RBP12.51□□□□□ -0.41
SMC1A-203ENST00000428014 MAP2P11137 1827 aaKnown RBP12.51□□□□□ -0.41
SMC1A-203ENST00000428014 POLKQ9UBT6 870 aa12.5□□□□□ -0.41
SMC1A-203ENST00000428014 ZBTB12Q9Y330 459 aaPredicted RBP12.5□□□□□ -0.41
SMC1A-203ENST00000428014 SBF2Q86WG5 1849 aa12.5□□□□□ -0.41
SMC1A-203ENST00000428014 ZBTB7CA1YPR0 619 aa12.49□□□□□ -0.41
SMC1A-203ENST00000428014 RRS1Q15050 365 aaKnown RBP12.49□□□□□ -0.41
SMC1A-203ENST00000428014 MARCH10Q8NA82 808 aaPredicted RBP12.49□□□□□ -0.41
SMC1A-203ENST00000428014 HSP90AB2PQ58FF8 381 aa12.48□□□□□ -0.41
SMC1A-203ENST00000428014 CAMKK2Q96RR4 588 aa12.48□□□□□ -0.41
SMC1A-203ENST00000428014 NBPF6Q5VWK0 638 aa12.47□□□□□ -0.41
SMC1A-203ENST00000428014 NBPF4Q96M43 638 aa12.47□□□□□ -0.41
SMC1A-203ENST00000428014 NHSQ6T4R5 1651 aa12.46□□□□□ -0.41
SMC1A-203ENST00000428014 MORC1Q86VD1 984 aa12.46□□□□□ -0.41
SMC1A-203ENST00000428014 RAPGEF4Q8WZA2 1011 aa12.46□□□□□ -0.41
SMC1A-203ENST00000428014 EMILIN1Q9Y6C2 1016 aa12.46□□□□□ -0.41
SMC1A-203ENST00000428014 RREB1Q92766 1687 aa12.45□□□□□ -0.42
SMC1A-203ENST00000428014 IGSF1Q8N6C5 1336 aa12.45□□□□□ -0.42
SMC1A-203ENST00000428014 TRIM37O94972 964 aa12.45□□□□□ -0.42
SMC1A-203ENST00000428014 ZEB1P37275 1124 aaPredicted RBP12.45□□□□□ -0.42
SMC1A-203ENST00000428014 ZCRB1Q8TBF4 217 aaKnown RBP12.45□□□□□ -0.42
SMC1A-203ENST00000428014 KAT6BQ8WYB5 2073 aa12.45□□□□□ -0.42
SMC1A-203ENST00000428014 KDRP35968 1356 aa12.44□□□□□ -0.42
SMC1A-203ENST00000428014 PCDH11XQ9BZA7 1347 aa12.44□□□□□ -0.42
SMC1A-203ENST00000428014 PCDH11YQ9BZA8 1340 aa12.44□□□□□ -0.42
SMC1A-203ENST00000428014 MEGF6O75095 1541 aa12.44□□□□□ -0.42
SMC1A-203ENST00000428014 TATP17735 454 aaPredicted RBP12.44□□□□□ -0.42
SMC1A-203ENST00000428014 NKX1-1Q15270 411 aaPredicted RBP12.44□□□□□ -0.42
SMC1A-203ENST00000428014 PKD1L3Q7Z443 1732 aa12.44□□□□□ -0.42
SMC1A-203ENST00000428014 APBA3O96018 575 aa12.43□□□□□ -0.42
SMC1A-203ENST00000428014 FBLN1P23142 703 aa12.43□□□□□ -0.42
SMC1A-203ENST00000428014 FKBP8Q14318 412 aa12.43□□□□□ -0.42
SMC1A-203ENST00000428014 DEFB132Q7Z7B7 95 aa12.43□□□□□ -0.42
SMC1A-203ENST00000428014 POLR3GLQ9BT43 218 aa12.43□□□□□ -0.42
SMC1A-203ENST00000428014 SHANK3Q9BYB0 1731 aa12.42□□□□□ -0.42
SMC1A-203ENST00000428014 RGPD2P0DJD1 1756 aa12.41□□□□□ -0.42
SMC1A-203ENST00000428014 EN1Q05925 392 aaPredicted RBP12.41□□□□□ -0.42
SMC1A-203ENST00000428014 EIF4A2Q14240 407 aaKnown RBP12.41□□□□□ -0.42
SMC1A-203ENST00000428014 FAM182BQ5T319 152 aa12.41□□□□□ -0.42
SMC1A-203ENST00000428014 EYA1Q99502 592 aa12.41□□□□□ -0.42
SMC1A-203ENST00000428014 SPG7Q9UQ90 795 aa12.41□□□□□ -0.42
SMC1A-203ENST00000428014 AMOTQ4VCS5 1084 aa12.4□□□□□ -0.42
SMC1A-203ENST00000428014 SLC27A3Q5K4L6 730 aa12.4□□□□□ -0.42
SMC1A-203ENST00000428014 NBPF14Q5TI25 921 aa12.4□□□□□ -0.42
SMC1A-203ENST00000428014 LTV1Q96GA3 475 aaPredicted RBP12.4□□□□□ -0.42
SMC1A-203ENST00000428014 NUP188Q5SRE5 1749 aa12.39□□□□□ -0.43
SMC1A-203ENST00000428014 LRP5O75197 1615 aa12.38□□□□□ -0.43
SMC1A-203ENST00000428014 HSP90AB1P08238 724 aaKnown RBP12.38□□□□□ -0.43
SMC1A-203ENST00000428014 IL13P35225 146 aa12.38□□□□□ -0.43
SMC1A-203ENST00000428014 EZH2Q15910 746 aaKnown RBP12.38□□□□□ -0.43
SMC1A-203ENST00000428014 PPM1GO15355 546 aaPredicted RBP12.37□□□□□ -0.43
SMC1A-203ENST00000428014 CYP27B1O15528 508 aa12.36□□□□□ -0.43
SMC1A-203ENST00000428014 MTHFSP49914 203 aa12.36□□□□□ -0.43
SMC1A-203ENST00000428014 IFNL2Q8IZJ0 200 aa12.36□□□□□ -0.43
SMC1A-203ENST00000428014 BTAF1O14981 1849 aa12.36□□□□□ -0.43
SMC1A-203ENST00000428014 TXNRD1Q16881 649 aa12.35□□□□□ -0.43
SMC1A-203ENST00000428014 PLEKHO1Q53GL0 409 aaPredicted RBP12.35□□□□□ -0.43
SMC1A-203ENST00000428014 PROM2Q8N271 834 aa12.35□□□□□ -0.43
SMC1A-203ENST00000428014 COL3A1P02461 1466 aaPredicted RBP12.34□□□□□ -0.43
SMC1A-203ENST00000428014 PAPPAQ13219 1627 aa12.34□□□□□ -0.43
SMC1A-203ENST00000428014 ERVV-2B6SEH9 535 aa12.34□□□□□ -0.43
SMC1A-203ENST00000428014 DDX54Q8TDD1 881 aaKnown RBP12.34□□□□□ -0.43
SMC1A-203ENST00000428014 SMARCC1Q92922 1105 aaPredicted RBP12.34□□□□□ -0.43
SMC1A-203ENST00000428014 DCAF5Q96JK2 942 aa12.34□□□□□ -0.43
SMC1A-203ENST00000428014 LY75O60449 1722 aa12.34□□□□□ -0.43
SMC1A-203ENST00000428014 ZNF831Q5JPB2 1677 aa12.33□□□□□ -0.44
SMC1A-203ENST00000428014 KCNQ2O43526 872 aa12.33□□□□□ -0.44
SMC1A-203ENST00000428014 DIAPH1O60610 1272 aaKnown RBP12.33□□□□□ -0.44
SMC1A-203ENST00000428014 PHKG2P15735 406 aa12.33□□□□□ -0.44
SMC1A-203ENST00000428014 TNNT2P45379 298 aaPredicted RBP12.33□□□□□ -0.44
SMC1A-203ENST00000428014 QSER1Q2KHR3 1735 aa12.33□□□□□ -0.44
SMC1A-203ENST00000428014 DOT1LQ8TEK3 1739 aa12.33□□□□□ -0.44
SMC1A-203ENST00000428014 USHBP1Q8N6Y0 703 aa12.32□□□□□ -0.44
SMC1A-203ENST00000428014 CFAP53Q96M91 514 aa12.32□□□□□ -0.44
SMC1A-203ENST00000428014 PRIM1P49642 420 aaKnown RBP12.31□□□□□ -0.44
SMC1A-203ENST00000428014 RALBP1Q15311 655 aa12.31□□□□□ -0.44
SMC1A-203ENST00000428014 SPDYE4A6NLX3 237 aa12.3□□□□□ -0.44
SMC1A-203ENST00000428014 SLC15A2Q16348 729 aa12.3□□□□□ -0.44
SMC1A-203ENST00000428014 CC2D1BQ5T0F9 858 aaKnown RBP12.3□□□□□ -0.44
SMC1A-203ENST00000428014 PTF1AQ7RTS3 328 aa12.3□□□□□ -0.44
SMC1A-203ENST00000428014 SLC16A10Q8TF71 515 aa12.3□□□□□ -0.44
SMC1A-203ENST00000428014 NUDCQ9Y266 331 aa12.3□□□□□ -0.44
SMC1A-203ENST00000428014 SRCAPQ6ZRS2 3230 aa12.3□□□□□ -0.44
SMC1A-203ENST00000428014 ADAMTS7Q9UKP4 1686 aa12.29□□□□□ -0.44
SMC1A-203ENST00000428014 AKAP4Q5JQC9 854 aa12.29□□□□□ -0.44
SMC1A-203ENST00000428014 SULT6B1Q6IMI4 303 aa12.29□□□□□ -0.44
SMC1A-203ENST00000428014 ACSBG1Q96GR2 724 aa12.29□□□□□ -0.44
SMC1A-203ENST00000428014 STK32BQ9NY57 414 aa12.29□□□□□ -0.44
SMC1A-203ENST00000428014 ITGB4P16144 1822 aa12.29□□□□□ -0.44
SMC1A-203ENST00000428014 TOGARAM1Q9Y4F4 1720 aa12.28□□□□□ -0.44
SMC1A-203ENST00000428014 PPP2R1AP30153 589 aa12.28□□□□□ -0.44
SMC1A-203ENST00000428014 FLAD1Q8NFF5 587 aa12.28□□□□□ -0.44
SMC1A-203ENST00000428014 CICQ96RK0 1608 aaPredicted RBP12.28□□□□□ -0.44
SMC1A-203ENST00000428014 CASZ1Q86V15 1759 aa12.28□□□□□ -0.44
SMC1A-203ENST00000428014 MRC1P22897 1456 aa12.27□□□□□ -0.44
SMC1A-203ENST00000428014 FCHSD2O94868 740 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms