RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 LMOD3Q0VAK6 560 aa17.89■□□□□ 0.45
LIG1-202ENST00000427526 ANKRD45Q5TZF3 282 aa17.88■□□□□ 0.45
LIG1-202ENST00000427526 NCOA3Q9Y6Q9 1424 aa17.88■□□□□ 0.45
LIG1-202ENST00000427526 MAP3K19Q56UN5 1328 aa17.88■□□□□ 0.45
LIG1-202ENST00000427526 SNX21Q969T3 373 aa17.88■□□□□ 0.45
LIG1-202ENST00000427526 C1orf115Q9H7X2 142 aa17.88■□□□□ 0.45
LIG1-202ENST00000427526 NLRP6P59044 892 aa17.88■□□□□ 0.45
LIG1-202ENST00000427526 DDIT3P35638 169 aa17.87■□□□□ 0.45
LIG1-202ENST00000427526 ANKARQ7Z5J8 1434 aa17.87■□□□□ 0.45
LIG1-202ENST00000427526 FAM83GA6ND36 823 aa17.87■□□□□ 0.45
LIG1-202ENST00000427526 ZNF142P52746 1687 aaPredicted RBP17.86■□□□□ 0.45
LIG1-202ENST00000427526 SETD1BQ9UPS6 1966 aaKnown RBP17.86■□□□□ 0.45
LIG1-202ENST00000427526 HSCBQ8IWL3 235 aa17.86■□□□□ 0.45
LIG1-202ENST00000427526 DCTN1Q14203 1278 aa17.85■□□□□ 0.45
LIG1-202ENST00000427526 KIF2CQ99661 725 aa17.85■□□□□ 0.45
LIG1-202ENST00000427526 API5Q9BZZ5 524 aaKnown RBP17.85■□□□□ 0.45
LIG1-202ENST00000427526 NPHP4O75161 1426 aaPredicted RBP17.84■□□□□ 0.45
LIG1-202ENST00000427526 KIF24Q5T7B8 1368 aa17.84■□□□□ 0.45
LIG1-202ENST00000427526 PEAK1Q9H792 1746 aa17.84■□□□□ 0.45
LIG1-202ENST00000427526 PHF8Q9UPP1 1060 aa17.84■□□□□ 0.45
LIG1-202ENST00000427526 ABTB2Q8N961 1025 aa17.84■□□□□ 0.45
LIG1-202ENST00000427526 CHD2O14647 1828 aaKnown RBP17.84■□□□□ 0.45
LIG1-202ENST00000427526 PODXL2Q9NZ53 605 aa17.83■□□□□ 0.44
LIG1-202ENST00000427526 AMPHP49418 695 aa17.82■□□□□ 0.44
LIG1-202ENST00000427526 C14orf37Q86TY3 774 aa17.82■□□□□ 0.44
LIG1-202ENST00000427526 L1TD1Q5T7N2 865 aaKnown RBP17.82■□□□□ 0.44
LIG1-202ENST00000427526 NALCNQ8IZF0 1738 aa17.82■□□□□ 0.44
LIG1-202ENST00000427526 FMN2Q9NZ56 1722 aa17.82■□□□□ 0.44
LIG1-202ENST00000427526 ESCO1Q5FWF5 840 aa17.81■□□□□ 0.44
LIG1-202ENST00000427526 TBC1D9Q6ZT07 1266 aa17.81■□□□□ 0.44
LIG1-202ENST00000427526 PIK3C2AO00443 1686 aa17.8■□□□□ 0.44
LIG1-202ENST00000427526 FSD2A1L4K1 749 aa17.8■□□□□ 0.44
LIG1-202ENST00000427526 INTS3Q68E01 1043 aaKnown RBP17.8■□□□□ 0.44
LIG1-202ENST00000427526 SBNO1A3KN83 1393 aa17.8■□□□□ 0.44
LIG1-202ENST00000427526 FLT4P35916 1363 aa17.79■□□□□ 0.44
LIG1-202ENST00000427526 DCTPP1Q9H773 170 aa17.79■□□□□ 0.44
LIG1-202ENST00000427526 CHL1O00533 1208 aa17.78■□□□□ 0.44
LIG1-202ENST00000427526 TRAK2O60296 914 aa17.78■□□□□ 0.44
LIG1-202ENST00000427526 FAM43AQ8N2R8 423 aa17.78■□□□□ 0.44
LIG1-202ENST00000427526 EYA1Q99502 592 aa17.78■□□□□ 0.44
LIG1-202ENST00000427526 RGS12O14924 1447 aa17.78■□□□□ 0.44
LIG1-202ENST00000427526 ADGRL3Q9HAR2 1447 aa17.78■□□□□ 0.44
LIG1-202ENST00000427526 MCM10Q7L590 875 aa17.77■□□□□ 0.44
LIG1-202ENST00000427526 PSME1Q06323 249 aa17.77■□□□□ 0.44
LIG1-202ENST00000427526 ORAI2Q96SN7 254 aa17.77■□□□□ 0.44
LIG1-202ENST00000427526 PLEKHM2Q8IWE5 1019 aa17.77■□□□□ 0.43
LIG1-202ENST00000427526 CIZ1Q9ULV3 898 aaPredicted RBP17.77■□□□□ 0.43
LIG1-202ENST00000427526 GSPT1P15170 499 aaKnown RBP17.76■□□□□ 0.43
LIG1-202ENST00000427526 FOXO3O43524 673 aa17.76■□□□□ 0.43
LIG1-202ENST00000427526 CD2BP2O95400 341 aaKnown RBP17.76■□□□□ 0.43
LIG1-202ENST00000427526 KIAA0232Q92628 1395 aa17.76■□□□□ 0.43
LIG1-202ENST00000427526 HOXC9P31274 260 aa17.75■□□□□ 0.43
LIG1-202ENST00000427526 DDX11L8A8MPP1 907 aa17.75■□□□□ 0.43
LIG1-202ENST00000427526 CDC45O75419 566 aa17.75■□□□□ 0.43
LIG1-202ENST00000427526 XRCC6P12956 609 aaKnown RBP eCLIP17.75■□□□□ 0.43
LIG1-202ENST00000427526 XPCQ01831 940 aaPredicted RBP17.75■□□□□ 0.43
LIG1-202ENST00000427526 KRT24Q2M2I5 525 aa17.75■□□□□ 0.43
LIG1-202ENST00000427526 PROSER2Q86WR7 435 aaPredicted RBP17.75■□□□□ 0.43
LIG1-202ENST00000427526 LTV1Q96GA3 475 aaPredicted RBP17.75■□□□□ 0.43
LIG1-202ENST00000427526 ATP10DQ9P241 1426 aa17.75■□□□□ 0.43
LIG1-202ENST00000427526 GOLGA6L3A6NEY3 463 aa17.74■□□□□ 0.43
LIG1-202ENST00000427526 RGPD1P0DJD0 1748 aa17.74■□□□□ 0.43
LIG1-202ENST00000427526 HAP1P54257 671 aaPredicted RBP17.74■□□□□ 0.43
LIG1-202ENST00000427526 ANKRD44Q8N8A2 993 aa17.74■□□□□ 0.43
LIG1-202ENST00000427526 ARHGEF10O15013 1369 aa17.74■□□□□ 0.43
LIG1-202ENST00000427526 HSP90AB1P08238 724 aaKnown RBP17.74■□□□□ 0.43
LIG1-202ENST00000427526 MTHFSDQ2M296 383 aaKnown RBP17.74■□□□□ 0.43
LIG1-202ENST00000427526 GZF1Q9H116 711 aaPredicted RBP17.74■□□□□ 0.43
LIG1-202ENST00000427526 RAB3GAP1Q15042 981 aa17.73■□□□□ 0.43
LIG1-202ENST00000427526 TNPO1Q92973 898 aaKnown RBP17.73■□□□□ 0.43
LIG1-202ENST00000427526 IGSF1Q8N6C5 1336 aa17.72■□□□□ 0.43
LIG1-202ENST00000427526 RBM42Q9BTD8 480 aaKnown RBP17.72■□□□□ 0.43
LIG1-202ENST00000427526 K7ELQ4 463 aaPredicted RBP17.72■□□□□ 0.43
LIG1-202ENST00000427526 RPAP2Q8IXW5 612 aaPredicted RBP17.72■□□□□ 0.43
LIG1-202ENST00000427526 CRB1P82279 1406 aa17.71■□□□□ 0.43
LIG1-202ENST00000427526 PTPRCP08575 1304 aa17.71■□□□□ 0.43
LIG1-202ENST00000427526 TTC22Q5TAA0 569 aa17.71■□□□□ 0.43
LIG1-202ENST00000427526 CEP85Q6P2H3 762 aa17.71■□□□□ 0.43
LIG1-202ENST00000427526 KDRP35968 1356 aa17.7■□□□□ 0.42
LIG1-202ENST00000427526 C16orf71Q8IYS4 520 aaPredicted RBP17.7■□□□□ 0.42
LIG1-202ENST00000427526 MIS18AQ9NYP9 233 aa17.7■□□□□ 0.42
LIG1-202ENST00000427526 MARF1Q9Y4F3 1742 aaKnown RBP17.7■□□□□ 0.42
LIG1-202ENST00000427526 RTL1A6NKG5 1358 aa17.7■□□□□ 0.42
LIG1-202ENST00000427526 ZBTB7CA1YPR0 619 aa17.69■□□□□ 0.42
LIG1-202ENST00000427526 MSH6P52701 1360 aa17.68■□□□□ 0.42
LIG1-202ENST00000427526 USHBP1Q8N6Y0 703 aa17.68■□□□□ 0.42
LIG1-202ENST00000427526 HSPA2P54652 639 aa17.67■□□□□ 0.42
LIG1-202ENST00000427526 LMOD2Q6P5Q4 547 aa17.67■□□□□ 0.42
LIG1-202ENST00000427526 GBP4Q96PP9 640 aa17.67■□□□□ 0.42
LIG1-202ENST00000427526 GAS2L2Q8NHY3 880 aa17.66■□□□□ 0.42
LIG1-202ENST00000427526 OTUD7AQ8TE49 926 aaPredicted RBP17.66■□□□□ 0.42
LIG1-202ENST00000427526 RTF1Q92541 710 aaKnown RBP17.66■□□□□ 0.42
LIG1-202ENST00000427526 MEIS3Q99687 375 aa17.66■□□□□ 0.42
LIG1-202ENST00000427526 USP26Q9BXU7 913 aa17.66■□□□□ 0.42
LIG1-202ENST00000427526 PANK2Q9BZ23 570 aa17.66■□□□□ 0.42
LIG1-202ENST00000427526 MRE11P49959 708 aa17.66■□□□□ 0.42
LIG1-202ENST00000427526 SLC4A2P04920 1241 aa17.66■□□□□ 0.42
LIG1-202ENST00000427526 IP6K1Q92551 441 aa17.66■□□□□ 0.42
LIG1-202ENST00000427526 C19orf44Q9H6X5 657 aa17.66■□□□□ 0.42
LIG1-202ENST00000427526 ISY1Q9ULR0 285 aaKnown RBP17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms