RNA–Protein interactions for RNA: ENST00000426246.2

USP42-203, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-203ENST00000426246 XIRP1Q702N8 1843 aaKnown RBP16.72■□□□□ 0.27
USP42-203ENST00000426246 USP19O94966 1318 aa16.71■□□□□ 0.27
USP42-203ENST00000426246 TRAK2O60296 914 aa16.71■□□□□ 0.27
USP42-203ENST00000426246 TRIM44Q96DX7 344 aaPredicted RBP16.71■□□□□ 0.27
USP42-203ENST00000426246 DTNBO60941 627 aa16.7■□□□□ 0.26
USP42-203ENST00000426246 SMARCA5O60264 1052 aaPredicted RBP16.7■□□□□ 0.26
USP42-203ENST00000426246 WDR63Q8IWG1 891 aa16.7■□□□□ 0.26
USP42-203ENST00000426246 TRIM35Q9UPQ4 493 aa16.7■□□□□ 0.26
USP42-203ENST00000426246 DLG5Q8TDM6 1919 aa16.7■□□□□ 0.26
USP42-203ENST00000426246 TRPM3Q9HCF6 1732 aaPredicted RBP16.7■□□□□ 0.26
USP42-203ENST00000426246 MPNDQ8N594 471 aa16.7■□□□□ 0.26
USP42-203ENST00000426246 NGDNQ8NEJ9 315 aaKnown RBP16.7■□□□□ 0.26
USP42-203ENST00000426246 TBC1D32Q96NH3 1257 aa16.69■□□□□ 0.26
USP42-203ENST00000426246 FCHSD2O94868 740 aa16.69■□□□□ 0.26
USP42-203ENST00000426246 TSHZ3Q63HK5 1081 aa16.69■□□□□ 0.26
USP42-203ENST00000426246 C16orf71Q8IYS4 520 aaPredicted RBP16.68■□□□□ 0.26
USP42-203ENST00000426246 MCM4P33991 863 aa16.67■□□□□ 0.26
USP42-203ENST00000426246 PHF8Q9UPP1 1060 aa16.67■□□□□ 0.26
USP42-203ENST00000426246 HSPA2P54652 639 aa16.67■□□□□ 0.26
USP42-203ENST00000426246 NFAT5O94916 1531 aa16.66■□□□□ 0.26
USP42-203ENST00000426246 MCM10Q7L590 875 aa16.66■□□□□ 0.26
USP42-203ENST00000426246 LTN1O94822 1766 aa16.66■□□□□ 0.26
USP42-203ENST00000426246 KIF1AQ12756 1690 aa16.65■□□□□ 0.26
USP42-203ENST00000426246 CHMP5Q9NZZ3 219 aa16.65■□□□□ 0.26
USP42-203ENST00000426246 PHRF1Q9P1Y6 1649 aaKnown RBP16.65■□□□□ 0.26
USP42-203ENST00000426246 MAP3K19Q56UN5 1328 aa16.65■□□□□ 0.26
USP42-203ENST00000426246 EIF4A2Q14240 407 aaKnown RBP16.65■□□□□ 0.26
USP42-203ENST00000426246 CHAMP1Q96JM3 812 aa16.65■□□□□ 0.26
USP42-203ENST00000426246 TWISTNBQ3B726 338 aaPredicted RBP16.64■□□□□ 0.25
USP42-203ENST00000426246 CHD1LQ86WJ1 897 aa16.64■□□□□ 0.25
USP42-203ENST00000426246 C1orf167Q5SNV9 1468 aa16.64■□□□□ 0.25
USP42-203ENST00000426246 LMOD2Q6P5Q4 547 aa16.64■□□□□ 0.25
USP42-203ENST00000426246 NCOA3Q9Y6Q9 1424 aa16.64■□□□□ 0.25
USP42-203ENST00000426246 HSP90AB2PQ58FF8 381 aa16.63■□□□□ 0.25
USP42-203ENST00000426246 PNNQ9H307 717 aaKnown RBP16.63■□□□□ 0.25
USP42-203ENST00000426246 SBNO1A3KN83 1393 aa16.63■□□□□ 0.25
USP42-203ENST00000426246 L1TD1Q5T7N2 865 aaKnown RBP16.63■□□□□ 0.25
USP42-203ENST00000426246 ORAI2Q96SN7 254 aa16.63■□□□□ 0.25
USP42-203ENST00000426246 DCCP43146 1447 aa16.62■□□□□ 0.25
USP42-203ENST00000426246 PLCB2Q00722 1185 aa16.62■□□□□ 0.25
USP42-203ENST00000426246 MST1RQ04912 1400 aa16.62■□□□□ 0.25
USP42-203ENST00000426246 SULT6B1Q6IMI4 303 aa16.62■□□□□ 0.25
USP42-203ENST00000426246 AEBP1Q8IUX7 1158 aa16.62■□□□□ 0.25
USP42-203ENST00000426246 TAOK2Q9UL54 1235 aa16.62■□□□□ 0.25
USP42-203ENST00000426246 TMEM94Q12767 1356 aa16.62■□□□□ 0.25
USP42-203ENST00000426246 F6X3S4 739 aa16.62■□□□□ 0.25
USP42-203ENST00000426246 XRCC6P12956 609 aaKnown RBP eCLIP16.62■□□□□ 0.25
USP42-203ENST00000426246 PROSER2Q86WR7 435 aaPredicted RBP16.62■□□□□ 0.25
USP42-203ENST00000426246 DDX49Q9Y6V7 483 aaKnown RBP16.62■□□□□ 0.25
USP42-203ENST00000426246 ALS2Q96Q42 1657 aa16.62■□□□□ 0.25
USP42-203ENST00000426246 RRAGDQ9NQL2 400 aaPredicted RBP16.61■□□□□ 0.25
USP42-203ENST00000426246 ESCO1Q5FWF5 840 aa16.61■□□□□ 0.25
USP42-203ENST00000426246 C8orf58Q8NAV2 365 aa16.61■□□□□ 0.25
USP42-203ENST00000426246 OTUD7AQ8TE49 926 aaPredicted RBP16.61■□□□□ 0.25
USP42-203ENST00000426246 C19orf44Q9H6X5 657 aa16.6■□□□□ 0.25
USP42-203ENST00000426246 FLT4P35916 1363 aa16.6■□□□□ 0.25
USP42-203ENST00000426246 TRIM6-TRIM34B2RNG4 842 aa16.6■□□□□ 0.25
USP42-203ENST00000426246 SLIT3O75094 1523 aa16.6■□□□□ 0.25
USP42-203ENST00000426246 MCTP1Q6DN14 999 aa16.6■□□□□ 0.25
USP42-203ENST00000426246 RILPL2Q969X0 211 aa16.6■□□□□ 0.25
USP42-203ENST00000426246 NLRP6P59044 892 aa16.59■□□□□ 0.25
USP42-203ENST00000426246 KIF24Q5T7B8 1368 aa16.59■□□□□ 0.25
USP42-203ENST00000426246 ANP32BQ92688 251 aaKnown RBP16.59■□□□□ 0.25
USP42-203ENST00000426246 CD2BP2O95400 341 aaKnown RBP16.59■□□□□ 0.25
USP42-203ENST00000426246 SSFA2P28290 1259 aa16.59■□□□□ 0.25
USP42-203ENST00000426246 IL16Q14005 1332 aa16.58■□□□□ 0.25
USP42-203ENST00000426246 ABTB2Q8N961 1025 aa16.58■□□□□ 0.25
USP42-203ENST00000426246 KDRP35968 1356 aa16.58■□□□□ 0.24
USP42-203ENST00000426246 LARP6Q9BRS8 491 aaKnown RBP16.58■□□□□ 0.24
USP42-203ENST00000426246 MBIPQ9NS73 344 aa16.58■□□□□ 0.24
USP42-203ENST00000426246 KIF16BQ96L93 1317 aa16.57■□□□□ 0.24
USP42-203ENST00000426246 NFE2L2Q16236 605 aa16.57■□□□□ 0.24
USP42-203ENST00000426246 TNPO1Q92973 898 aaKnown RBP16.57■□□□□ 0.24
USP42-203ENST00000426246 MAP4K4O95819 1239 aaPredicted RBP16.57■□□□□ 0.24
USP42-203ENST00000426246 ARHGEF10O15013 1369 aa16.57■□□□□ 0.24
USP42-203ENST00000426246 GOLGA6L22H0YM25 854 aa16.57■□□□□ 0.24
USP42-203ENST00000426246 TBC1D9Q6ZT07 1266 aa16.56■□□□□ 0.24
USP42-203ENST00000426246 RNF214Q8ND24 703 aa16.56■□□□□ 0.24
USP42-203ENST00000426246 GBP4Q96PP9 640 aa16.55■□□□□ 0.24
USP42-203ENST00000426246 HOXC9P31274 260 aa16.55■□□□□ 0.24
USP42-203ENST00000426246 ZBTB40Q9NUA8 1239 aa16.55■□□□□ 0.24
USP42-203ENST00000426246 EXOC6BQ9Y2D4 811 aa16.55■□□□□ 0.24
USP42-203ENST00000426246 CRYBG1Q9Y4K1 1723 aa16.55■□□□□ 0.24
USP42-203ENST00000426246 IGSF1Q8N6C5 1336 aa16.55■□□□□ 0.24
USP42-203ENST00000426246 FOXO3O43524 673 aa16.55■□□□□ 0.24
USP42-203ENST00000426246 RTL1A6NKG5 1358 aa16.54■□□□□ 0.24
USP42-203ENST00000426246 SLC4A2P04920 1241 aa16.54■□□□□ 0.24
USP42-203ENST00000426246 EIF2S2P20042 333 aaKnown RBP16.54■□□□□ 0.24
USP42-203ENST00000426246 PSME1Q06323 249 aa16.54■□□□□ 0.24
USP42-203ENST00000426246 CAVIN1Q6NZI2 390 aaKnown RBP16.53■□□□□ 0.24
USP42-203ENST00000426246 MED1Q15648 1581 aaPredicted RBP16.53■□□□□ 0.24
USP42-203ENST00000426246 RGPD2P0DJD1 1756 aa16.53■□□□□ 0.24
USP42-203ENST00000426246 RTF1Q92541 710 aaKnown RBP16.53■□□□□ 0.24
USP42-203ENST00000426246 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.52■□□□□ 0.23
USP42-203ENST00000426246 ZNF853P0CG23 659 aa16.52■□□□□ 0.23
USP42-203ENST00000426246 GNAI1P63096 354 aa16.51■□□□□ 0.23
USP42-203ENST00000426246 XPCQ01831 940 aaPredicted RBP16.51■□□□□ 0.23
USP42-203ENST00000426246 GAS2L2Q8NHY3 880 aa16.51■□□□□ 0.23
USP42-203ENST00000426246 DDX54Q8TDD1 881 aaKnown RBP16.51■□□□□ 0.23
USP42-203ENST00000426246 EYA1Q99502 592 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms