RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 CHMP4BQ9H444 224 aaKnown RBP13.72□□□□□ -0.21
DDX56-203ENST00000421223 C22orf23Q9BZE7 217 aa13.72□□□□□ -0.21
DDX56-203ENST00000421223 SBNO1A3KN83 1393 aa13.71□□□□□ -0.21
DDX56-203ENST00000421223 GAS2L2Q8NHY3 880 aa13.71□□□□□ -0.22
DDX56-203ENST00000421223 SETD1BQ9UPS6 1966 aaKnown RBP13.7□□□□□ -0.22
DDX56-203ENST00000421223 FRAT2O75474 233 aaPredicted RBP13.7□□□□□ -0.22
DDX56-203ENST00000421223 MEIS3Q99687 375 aa13.7□□□□□ -0.22
DDX56-203ENST00000421223 MON2Q7Z3U7 1717 aa13.7□□□□□ -0.22
DDX56-203ENST00000421223 EIF2S2P20042 333 aaKnown RBP13.7□□□□□ -0.22
DDX56-203ENST00000421223 C16orf71Q8IYS4 520 aaPredicted RBP13.7□□□□□ -0.22
DDX56-203ENST00000421223 LRRC59Q96AG4 307 aaKnown RBP13.7□□□□□ -0.22
DDX56-203ENST00000421223 TBC1D32Q96NH3 1257 aa13.7□□□□□ -0.22
DDX56-203ENST00000421223 STK31Q9BXU1 1019 aa13.7□□□□□ -0.22
DDX56-203ENST00000421223 ABCC4O15439 1325 aa13.7□□□□□ -0.22
DDX56-203ENST00000421223 USP31Q70CQ4 1352 aa13.69□□□□□ -0.22
DDX56-203ENST00000421223 GNAT3A8MTJ3 354 aa13.69□□□□□ -0.22
DDX56-203ENST00000421223 KNDC1Q76NI1 1749 aa13.69□□□□□ -0.22
DDX56-203ENST00000421223 FER1L4A9Z1Z3 1794 aa13.69□□□□□ -0.22
DDX56-203ENST00000421223 SMARCA5O60264 1052 aaPredicted RBP13.69□□□□□ -0.22
DDX56-203ENST00000421223 HAP1P54257 671 aaPredicted RBP13.69□□□□□ -0.22
DDX56-203ENST00000421223 BRPF1P55201 1214 aaPredicted RBP13.69□□□□□ -0.22
DDX56-203ENST00000421223 FKBP5Q13451 457 aaPredicted RBP13.69□□□□□ -0.22
DDX56-203ENST00000421223 PKNOX2Q96KN3 472 aa13.69□□□□□ -0.22
DDX56-203ENST00000421223 USP35Q9P2H5 1018 aa13.69□□□□□ -0.22
DDX56-203ENST00000421223 VIRMAQ69YN4 1812 aaKnown RBP13.69□□□□□ -0.22
DDX56-203ENST00000421223 DIP2AQ14689 1571 aa13.69□□□□□ -0.22
DDX56-203ENST00000421223 ARHGAP23Q9P227 1491 aa13.68□□□□□ -0.22
DDX56-203ENST00000421223 RGPD8O14715 1765 aaPredicted RBP13.68□□□□□ -0.22
DDX56-203ENST00000421223 PROSER2Q86WR7 435 aaPredicted RBP13.68□□□□□ -0.22
DDX56-203ENST00000421223 PIK3R4Q99570 1358 aa13.68□□□□□ -0.22
DDX56-203ENST00000421223 GCC1Q96CN9 775 aa13.68□□□□□ -0.22
DDX56-203ENST00000421223 SLIT1O75093 1534 aa13.67□□□□□ -0.22
DDX56-203ENST00000421223 AKAP12Q02952 1782 aa13.67□□□□□ -0.22
DDX56-203ENST00000421223 SSH2Q76I76 1423 aa13.67□□□□□ -0.22
DDX56-203ENST00000421223 IL17REQ8NFR9 667 aa13.67□□□□□ -0.22
DDX56-203ENST00000421223 TBC1D2Q9BYX2 928 aa13.67□□□□□ -0.22
DDX56-203ENST00000421223 IGSF1Q8N6C5 1336 aa13.67□□□□□ -0.22
DDX56-203ENST00000421223 PTCH1Q13635 1447 aa13.67□□□□□ -0.22
DDX56-203ENST00000421223 NBPF6Q5VWK0 638 aa13.66□□□□□ -0.22
DDX56-203ENST00000421223 NBPF4Q96M43 638 aa13.66□□□□□ -0.22
DDX56-203ENST00000421223 DLG5Q8TDM6 1919 aa13.66□□□□□ -0.22
DDX56-203ENST00000421223 OTUD7AQ8TE49 926 aaPredicted RBP13.66□□□□□ -0.22
DDX56-203ENST00000421223 ARHGEF10O15013 1369 aa13.66□□□□□ -0.22
DDX56-203ENST00000421223 PEAK1Q9H792 1746 aa13.65□□□□□ -0.22
DDX56-203ENST00000421223 ZC3H6P61129 1189 aaKnown RBP13.65□□□□□ -0.22
DDX56-203ENST00000421223 DDX17Q92841 729 aaKnown RBP13.65□□□□□ -0.22
DDX56-203ENST00000421223 LGR6Q9HBX8 967 aa13.65□□□□□ -0.22
DDX56-203ENST00000421223 MSH6P52701 1360 aa13.64□□□□□ -0.23
DDX56-203ENST00000421223 MPRIPQ6WCQ1 1025 aa13.64□□□□□ -0.23
DDX56-203ENST00000421223 CEP170BQ9Y4F5 1589 aaPredicted RBP13.64□□□□□ -0.23
DDX56-203ENST00000421223 INTS3Q68E01 1043 aaKnown RBP13.64□□□□□ -0.23
DDX56-203ENST00000421223 FOXD4L1Q9NU39 408 aa13.64□□□□□ -0.23
DDX56-203ENST00000421223 ANXA1P04083 346 aa13.64□□□□□ -0.23
DDX56-203ENST00000421223 RTN4Q9NQC3 1192 aaKnown RBP13.64□□□□□ -0.23
DDX56-203ENST00000421223 CRB1P82279 1406 aa13.63□□□□□ -0.23
DDX56-203ENST00000421223 TAF7Q15545 349 aaPredicted RBP13.63□□□□□ -0.23
DDX56-203ENST00000421223 RIMS1Q86UR5 1692 aaKnown RBP13.63□□□□□ -0.23
DDX56-203ENST00000421223 FLIIQ13045 1269 aa13.62□□□□□ -0.23
DDX56-203ENST00000421223 HDGFL1Q5TGJ6 251 aa13.62□□□□□ -0.23
DDX56-203ENST00000421223 CCDC30Q5VVM6 783 aa13.62□□□□□ -0.23
DDX56-203ENST00000421223 CEP85Q6P2H3 762 aa13.62□□□□□ -0.23
DDX56-203ENST00000421223 EXOC6BQ9Y2D4 811 aa13.62□□□□□ -0.23
DDX56-203ENST00000421223 GCP02774 474 aa13.62□□□□□ -0.23
DDX56-203ENST00000421223 TEFQ10587 303 aa13.62□□□□□ -0.23
DDX56-203ENST00000421223 ZNF530Q6P9A1 599 aaPredicted RBP13.62□□□□□ -0.23
DDX56-203ENST00000421223 IP6K1Q92551 441 aa13.62□□□□□ -0.23
DDX56-203ENST00000421223 ARXQ96QS3 562 aa13.62□□□□□ -0.23
DDX56-203ENST00000421223 TBC1D9Q6ZT07 1266 aa13.61□□□□□ -0.23
DDX56-203ENST00000421223 PTPRCP08575 1304 aa13.61□□□□□ -0.23
DDX56-203ENST00000421223 KCNQ3O43525 872 aa13.61□□□□□ -0.23
DDX56-203ENST00000421223 BMP2KLQ5H9B9 411 aa13.61□□□□□ -0.23
DDX56-203ENST00000421223 TSHZ3Q63HK5 1081 aa13.61□□□□□ -0.23
DDX56-203ENST00000421223 ANKRD44Q8N8A2 993 aa13.61□□□□□ -0.23
DDX56-203ENST00000421223 DCTPP1Q9H773 170 aa13.61□□□□□ -0.23
DDX56-203ENST00000421223 PHAXQ9H814 394 aaKnown RBP13.61□□□□□ -0.23
DDX56-203ENST00000421223 HSP90AA1P07900 732 aaKnown RBP13.61□□□□□ -0.23
DDX56-203ENST00000421223 KIAA0232Q92628 1395 aa13.6□□□□□ -0.23
DDX56-203ENST00000421223 KRT28Q7Z3Y7 464 aa13.6□□□□□ -0.23
DDX56-203ENST00000421223 HSCBQ8IWL3 235 aa13.6□□□□□ -0.23
DDX56-203ENST00000421223 PLEKHM2Q8IWE5 1019 aa13.6□□□□□ -0.23
DDX56-203ENST00000421223 RPAP2Q8IXW5 612 aaPredicted RBP13.6□□□□□ -0.23
DDX56-203ENST00000421223 KDRP35968 1356 aa13.59□□□□□ -0.23
DDX56-203ENST00000421223 MAP3K5Q99683 1374 aa13.59□□□□□ -0.23
DDX56-203ENST00000421223 RBM42Q9BTD8 480 aaKnown RBP13.59□□□□□ -0.23
DDX56-203ENST00000421223 ANKARQ7Z5J8 1434 aa13.59□□□□□ -0.23
DDX56-203ENST00000421223 KCNH5Q8NCM2 988 aa13.58□□□□□ -0.23
DDX56-203ENST00000421223 CABLES1Q8TDN4 633 aa13.58□□□□□ -0.23
DDX56-203ENST00000421223 TOPAZ1Q8N9V7 1692 aa13.58□□□□□ -0.23
DDX56-203ENST00000421223 NRKQ7Z2Y5 1582 aa13.58□□□□□ -0.23
DDX56-203ENST00000421223 GSPT1P15170 499 aaKnown RBP13.58□□□□□ -0.24
DDX56-203ENST00000421223 CCT4P50991 539 aaKnown RBP13.58□□□□□ -0.24
DDX56-203ENST00000421223 RTL1A6NKG5 1358 aa13.58□□□□□ -0.24
DDX56-203ENST00000421223 HMMRO75330 724 aa13.58□□□□□ -0.24
DDX56-203ENST00000421223 GNAI2P04899 355 aa13.58□□□□□ -0.24
DDX56-203ENST00000421223 C1orf141Q5JVX7 400 aa13.58□□□□□ -0.24
DDX56-203ENST00000421223 ANKRD24Q8TF21 1146 aa13.58□□□□□ -0.24
DDX56-203ENST00000421223 HSP90AB1P08238 724 aaKnown RBP13.57□□□□□ -0.24
DDX56-203ENST00000421223 HSPA2P54652 639 aa13.57□□□□□ -0.24
DDX56-203ENST00000421223 NLRP2Q9NX02 1062 aa13.57□□□□□ -0.24
DDX56-203ENST00000421223 PIK3C2AO00443 1686 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms