RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 RARSP54136 660 aaKnown RBP14.39□□□□□ -0.11
PTPRF-205ENST00000414879 TTC39AQ5SRH9 613 aa14.39□□□□□ -0.11
PTPRF-205ENST00000414879 NUTM2AQ8IVF1 878 aaPredicted RBP14.39□□□□□ -0.11
PTPRF-205ENST00000414879 ZFYVE16Q7Z3T8 1539 aa14.39□□□□□ -0.11
PTPRF-205ENST00000414879 CHD1LQ86WJ1 897 aa14.39□□□□□ -0.11
PTPRF-205ENST00000414879 FMNL2Q96PY5 1086 aa14.39□□□□□ -0.11
PTPRF-205ENST00000414879 PARD3Q8TEW0 1356 aa14.39□□□□□ -0.11
PTPRF-205ENST00000414879 ARHGAP45Q92619 1136 aa14.39□□□□□ -0.11
PTPRF-205ENST00000414879 MPHOSPH8Q99549 860 aa14.39□□□□□ -0.11
PTPRF-205ENST00000414879 AKAP2Q9Y2D5 859 aa14.39□□□□□ -0.11
PTPRF-205ENST00000414879 GOLGA6L19H0YKK7 550 aa14.38□□□□□ -0.11
PTPRF-205ENST00000414879 YTHDC2Q9H6S0 1430 aaKnown RBP14.38□□□□□ -0.11
PTPRF-205ENST00000414879 CLSTN1O94985 981 aa14.38□□□□□ -0.11
PTPRF-205ENST00000414879 TPM3P06753 285 aa14.38□□□□□ -0.11
PTPRF-205ENST00000414879 AMER1Q5JTC6 1135 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-205ENST00000414879 NAP1L5Q96NT1 182 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-205ENST00000414879 CTNNA3Q9UI47 895 aa14.38□□□□□ -0.11
PTPRF-205ENST00000414879 MCTP1Q6DN14 999 aa14.38□□□□□ -0.11
PTPRF-205ENST00000414879 TPM1P09493 284 aa14.37□□□□□ -0.11
PTPRF-205ENST00000414879 KIF1BPQ96EK5 621 aa14.37□□□□□ -0.11
PTPRF-205ENST00000414879 FOXD4L1Q9NU39 408 aa14.37□□□□□ -0.11
PTPRF-205ENST00000414879 KDM6BO15054 1643 aa14.37□□□□□ -0.11
PTPRF-205ENST00000414879 ANKRD20A12PQ8NF67 263 aa14.37□□□□□ -0.11
PTPRF-205ENST00000414879 GZF1Q9H116 711 aaPredicted RBP14.37□□□□□ -0.11
PTPRF-205ENST00000414879 NPATQ14207 1427 aa14.37□□□□□ -0.11
PTPRF-205ENST00000414879 SRGAP3O43295 1099 aa14.37□□□□□ -0.11
PTPRF-205ENST00000414879 TOM1O60784 492 aa14.37□□□□□ -0.11
PTPRF-205ENST00000414879 KRT32Q14532 448 aa14.37□□□□□ -0.11
PTPRF-205ENST00000414879 CWC22Q9HCG8 908 aaKnown RBP14.37□□□□□ -0.11
PTPRF-205ENST00000414879 ABCA9Q8IUA7 1624 aa14.36□□□□□ -0.11
PTPRF-205ENST00000414879 EXOC5O00471 708 aa14.36□□□□□ -0.11
PTPRF-205ENST00000414879 FYB1O15117 783 aa14.36□□□□□ -0.11
PTPRF-205ENST00000414879 XPCQ01831 940 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-205ENST00000414879 BECN2A8MW95 431 aa14.36□□□□□ -0.11
PTPRF-205ENST00000414879 FLT4P35916 1363 aa14.36□□□□□ -0.11
PTPRF-205ENST00000414879 TSR1Q2NL82 804 aaKnown RBP14.35□□□□□ -0.11
PTPRF-205ENST00000414879 CCDC184Q52MB2 194 aa14.35□□□□□ -0.11
PTPRF-205ENST00000414879 NCBP3Q53F19 620 aaKnown RBP14.35□□□□□ -0.11
PTPRF-205ENST00000414879 IGHMBP2P38935 993 aaKnown RBP14.35□□□□□ -0.11
PTPRF-205ENST00000414879 TPD52L1Q16890 204 aaPredicted RBP14.35□□□□□ -0.11
PTPRF-205ENST00000414879 TESK2Q96S53 571 aa14.35□□□□□ -0.11
PTPRF-205ENST00000414879 INSRP06213 1382 aa14.34□□□□□ -0.11
PTPRF-205ENST00000414879 VPS53Q5VIR6 699 aa14.34□□□□□ -0.11
PTPRF-205ENST00000414879 MYL6BP14649 208 aa14.34□□□□□ -0.11
PTPRF-205ENST00000414879 SSH1Q8WYL5 1049 aa14.34□□□□□ -0.11
PTPRF-205ENST00000414879 TCEAL9Q9UHQ7 104 aa14.34□□□□□ -0.11
PTPRF-205ENST00000414879 COL17A1Q9UMD9 1497 aaPredicted RBP14.34□□□□□ -0.11
PTPRF-205ENST00000414879 CCDC73Q6ZRK6 1079 aa14.34□□□□□ -0.11
PTPRF-205ENST00000414879 PHF23Q9BUL5 403 aaPredicted RBP14.34□□□□□ -0.11
PTPRF-205ENST00000414879 PIK3R4Q99570 1358 aa14.33□□□□□ -0.11
PTPRF-205ENST00000414879 MLH3Q9UHC1 1453 aa14.33□□□□□ -0.11
PTPRF-205ENST00000414879 A0A087WZG4 1122 aa14.33□□□□□ -0.11
PTPRF-205ENST00000414879 GLRX3O76003 335 aaKnown RBP14.33□□□□□ -0.11
PTPRF-205ENST00000414879 LETM1O95202 739 aaPredicted RBP14.33□□□□□ -0.11
PTPRF-205ENST00000414879 MCM10Q7L590 875 aa14.33□□□□□ -0.11
PTPRF-205ENST00000414879 AEBP1Q8IUX7 1158 aa14.33□□□□□ -0.12
PTPRF-205ENST00000414879 TMEM57Q8N5G2 664 aa14.33□□□□□ -0.12
PTPRF-205ENST00000414879 FBXW7Q969H0 707 aa14.33□□□□□ -0.12
PTPRF-205ENST00000414879 ANKRD24Q8TF21 1146 aa14.33□□□□□ -0.12
PTPRF-205ENST00000414879 DNAAF4Q8WXU2 420 aa14.33□□□□□ -0.12
PTPRF-205ENST00000414879 DNAJC2Q99543 621 aaKnown RBP14.33□□□□□ -0.12
PTPRF-205ENST00000414879 MBD3O95983 291 aa14.32□□□□□ -0.12
PTPRF-205ENST00000414879 PIP4K2BP78356 416 aa14.32□□□□□ -0.12
PTPRF-205ENST00000414879 ZSCAN31Q96LW9 406 aaPredicted RBP14.32□□□□□ -0.12
PTPRF-205ENST00000414879 CYP46A1Q9Y6A2 500 aa14.32□□□□□ -0.12
PTPRF-205ENST00000414879 DCAF8L1A6NGE4 600 aa14.32□□□□□ -0.12
PTPRF-205ENST00000414879 UNC13BO14795 1591 aa14.32□□□□□ -0.12
PTPRF-205ENST00000414879 BABAM1Q9NWV8 329 aa14.31□□□□□ -0.12
PTPRF-205ENST00000414879 PLEKHH1Q9ULM0 1364 aa14.31□□□□□ -0.12
PTPRF-205ENST00000414879 VPS37CA5D8V6 355 aaPredicted RBP14.31□□□□□ -0.12
PTPRF-205ENST00000414879 BICD2Q8TD16 824 aa14.31□□□□□ -0.12
PTPRF-205ENST00000414879 AACSQ86V21 672 aa14.3□□□□□ -0.12
PTPRF-205ENST00000414879 EDC4Q6P2E9 1401 aaKnown RBP14.3□□□□□ -0.12
PTPRF-205ENST00000414879 SNRPA1P09661 255 aaKnown RBP14.3□□□□□ -0.12
PTPRF-205ENST00000414879 AKAP4Q5JQC9 854 aa14.3□□□□□ -0.12
PTPRF-205ENST00000414879 BACH2Q9BYV9 841 aa14.3□□□□□ -0.12
PTPRF-205ENST00000414879 C1orf115Q9H7X2 142 aa14.3□□□□□ -0.12
PTPRF-205ENST00000414879 CIZ1Q9ULV3 898 aaPredicted RBP14.3□□□□□ -0.12
PTPRF-205ENST00000414879 KCNA6P17658 529 aa14.3□□□□□ -0.12
PTPRF-205ENST00000414879 SBNO2Q9Y2G9 1366 aa14.3□□□□□ -0.12
PTPRF-205ENST00000414879 NEK4P51957 841 aa14.29□□□□□ -0.12
PTPRF-205ENST00000414879 ZNF396Q96N95 335 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-205ENST00000414879 ZPR1O75312 459 aa14.29□□□□□ -0.12
PTPRF-205ENST00000414879 CDKL5O76039 1030 aa14.29□□□□□ -0.12
PTPRF-205ENST00000414879 GSE1Q14687 1217 aa14.29□□□□□ -0.12
PTPRF-205ENST00000414879 SMARCC1Q92922 1105 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-205ENST00000414879 FLIIQ13045 1269 aa14.28□□□□□ -0.12
PTPRF-205ENST00000414879 JMYQ8N9B5 988 aa14.28□□□□□ -0.12
PTPRF-205ENST00000414879 IFIT1P09914 478 aaKnown RBP14.28□□□□□ -0.12
PTPRF-205ENST00000414879 NGLY1Q96IV0 654 aa14.28□□□□□ -0.12
PTPRF-205ENST00000414879 ZNF287Q9HBT7 754 aa14.28□□□□□ -0.12
PTPRF-205ENST00000414879 NAT10Q9H0A0 1025 aaKnown RBP14.28□□□□□ -0.12
PTPRF-205ENST00000414879 IQGAP3Q86VI3 1631 aa14.28□□□□□ -0.12
PTPRF-205ENST00000414879 TMEM2Q9UHN6 1383 aa14.27□□□□□ -0.12
PTPRF-205ENST00000414879 CDCA7Q9BWT1 371 aaPredicted RBP14.27□□□□□ -0.12
PTPRF-205ENST00000414879 SASS6Q6UVJ0 657 aa14.27□□□□□ -0.13
PTPRF-205ENST00000414879 TRIM22Q8IYM9 498 aa14.27□□□□□ -0.13
PTPRF-205ENST00000414879 FOXD4L5Q5VV16 416 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-205ENST00000414879 FOXD4L4Q8WXT5 416 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-205ENST00000414879 DHX8Q14562 1220 aaKnown RBP14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 132 ms