RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 TBX22Q9Y458 520 aa13.57□□□□□ -0.24
PTPRF-204ENST00000412568 MAGI2Q86UL8 1455 aa13.56□□□□□ -0.24
PTPRF-204ENST00000412568 HSP90AA2PQ14568 343 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-204ENST00000412568 IL27Q8NEV9 243 aa13.56□□□□□ -0.24
PTPRF-204ENST00000412568 EIF2AK4Q9P2K8 1649 aaKnown RBP13.56□□□□□ -0.24
PTPRF-204ENST00000412568 H3BQV1 296 aa13.56□□□□□ -0.24
PTPRF-204ENST00000412568 IFFO2Q5TF58 517 aa13.56□□□□□ -0.24
PTPRF-204ENST00000412568 RSPH6AQ9H0K4 717 aa13.56□□□□□ -0.24
PTPRF-204ENST00000412568 RNF123Q5XPI4 1314 aa13.56□□□□□ -0.24
PTPRF-204ENST00000412568 ATP5J2-PTCD1G3V325 749 aa13.55□□□□□ -0.24
PTPRF-204ENST00000412568 VAMP4O75379 141 aa13.55□□□□□ -0.24
PTPRF-204ENST00000412568 CWC27Q6UX04 472 aaKnown RBP13.55□□□□□ -0.24
PTPRF-204ENST00000412568 PIK3C2GO75747 1445 aa13.55□□□□□ -0.24
PTPRF-204ENST00000412568 CADPS2Q86UW7 1296 aa13.55□□□□□ -0.24
PTPRF-204ENST00000412568 MYD88Q99836 296 aa13.55□□□□□ -0.24
PTPRF-204ENST00000412568 GCP02774 474 aa13.55□□□□□ -0.24
PTPRF-204ENST00000412568 ZCCHC11Q5TAX3 1644 aaKnown RBP13.54□□□□□ -0.24
PTPRF-204ENST00000412568 AMOTQ4VCS5 1084 aa13.54□□□□□ -0.24
PTPRF-204ENST00000412568 KIF6Q6ZMV9 814 aa13.54□□□□□ -0.24
PTPRF-204ENST00000412568 STK11IPQ8N1F8 1099 aa13.54□□□□□ -0.24
PTPRF-204ENST00000412568 PUS7Q96PZ0 661 aaKnown RBP13.54□□□□□ -0.24
PTPRF-204ENST00000412568 ZBTB3Q9H5J0 574 aa13.54□□□□□ -0.24
PTPRF-204ENST00000412568 CDK11BP21127 795 aaKnown RBP13.53□□□□□ -0.24
PTPRF-204ENST00000412568 DNAAF4Q8WXU2 420 aa13.53□□□□□ -0.24
PTPRF-204ENST00000412568 BRPF3Q9ULD4 1205 aa13.53□□□□□ -0.24
PTPRF-204ENST00000412568 TRIM35Q9UPQ4 493 aa13.53□□□□□ -0.24
PTPRF-204ENST00000412568 BICDL1Q6ZP65 573 aa13.53□□□□□ -0.24
PTPRF-204ENST00000412568 UPF3BQ9BZI7 483 aaKnown RBP13.53□□□□□ -0.24
PTPRF-204ENST00000412568 TMX4Q9H1E5 349 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-204ENST00000412568 METP08581 1390 aa13.53□□□□□ -0.24
PTPRF-204ENST00000412568 ADGBQ8N7X0 1667 aa13.53□□□□□ -0.24
PTPRF-204ENST00000412568 SF3A1Q15459 793 aaKnown RBP13.53□□□□□ -0.24
PTPRF-204ENST00000412568 CCDC27Q2M243 656 aa13.53□□□□□ -0.24
PTPRF-204ENST00000412568 CHPF2Q9P2E5 772 aa13.53□□□□□ -0.24
PTPRF-204ENST00000412568 TTC21AQ8NDW8 1320 aa13.52□□□□□ -0.24
PTPRF-204ENST00000412568 C16orf71Q8IYS4 520 aaPredicted RBP13.52□□□□□ -0.24
PTPRF-204ENST00000412568 CCDC8Q9H0W5 538 aaPredicted RBP13.52□□□□□ -0.24
PTPRF-204ENST00000412568 SMC3Q9UQE7 1217 aa13.52□□□□□ -0.24
PTPRF-204ENST00000412568 NEO1Q92859 1461 aa13.52□□□□□ -0.24
PTPRF-204ENST00000412568 TRAK2O60296 914 aa13.52□□□□□ -0.25
PTPRF-204ENST00000412568 IL13P35225 146 aa13.52□□□□□ -0.25
PTPRF-204ENST00000412568 RNF20Q5VTR2 975 aa13.52□□□□□ -0.25
PTPRF-204ENST00000412568 CNNM1Q9NRU3 951 aa13.52□□□□□ -0.25
PTPRF-204ENST00000412568 FKBP4Q02790 459 aaKnown RBP eCLIP13.52□□□□□ -0.25
PTPRF-204ENST00000412568 CHAF1AQ13111 956 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-204ENST00000412568 SKOR2Q2VWA4 1001 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-204ENST00000412568 SYAP1Q96A49 352 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-204ENST00000412568 FBXW7Q969H0 707 aa13.51□□□□□ -0.25
PTPRF-204ENST00000412568 DBF4Q9UBU7 674 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-204ENST00000412568 MAP3K2Q9Y2U5 619 aa13.51□□□□□ -0.25
PTPRF-204ENST00000412568 IL16Q14005 1332 aa13.51□□□□□ -0.25
PTPRF-204ENST00000412568 MRPL50Q8N5N7 158 aaKnown RBP13.51□□□□□ -0.25
PTPRF-204ENST00000412568 BOLA2Q9H3K6 86 aa13.51□□□□□ -0.25
PTPRF-204ENST00000412568 TMEM2Q9UHN6 1383 aa13.5□□□□□ -0.25
PTPRF-204ENST00000412568 HOXC9P31274 260 aa13.5□□□□□ -0.25
PTPRF-204ENST00000412568 C19orf44Q9H6X5 657 aa13.5□□□□□ -0.25
PTPRF-204ENST00000412568 CDC42BPAQ5VT25 1732 aa13.5□□□□□ -0.25
PTPRF-204ENST00000412568 GPTP24298 496 aa13.5□□□□□ -0.25
PTPRF-204ENST00000412568 G2E3Q7L622 706 aa13.5□□□□□ -0.25
PTPRF-204ENST00000412568 LARP6Q9BRS8 491 aaKnown RBP13.5□□□□□ -0.25
PTPRF-204ENST00000412568 PREX2Q70Z35 1606 aa13.5□□□□□ -0.25
PTPRF-204ENST00000412568 TSPOAP1O95153 1857 aa13.5□□□□□ -0.25
PTPRF-204ENST00000412568 TMOD3Q9NYL9 352 aa13.5□□□□□ -0.25
PTPRF-204ENST00000412568 CPLX1O14810 134 aa13.5□□□□□ -0.25
PTPRF-204ENST00000412568 MX1P20591 662 aa13.5□□□□□ -0.25
PTPRF-204ENST00000412568 STK3Q13188 491 aa13.5□□□□□ -0.25
PTPRF-204ENST00000412568 CCDC57Q2TAC2 916 aa13.5□□□□□ -0.25
PTPRF-204ENST00000412568 C8orf34Q49A92 452 aa13.5□□□□□ -0.25
PTPRF-204ENST00000412568 RAD21O60216 631 aa13.49□□□□□ -0.25
PTPRF-204ENST00000412568 NFATC2IPQ8NCF5 419 aa13.49□□□□□ -0.25
PTPRF-204ENST00000412568 MTMR7Q9Y216 660 aa13.49□□□□□ -0.25
PTPRF-204ENST00000412568 PRDM15P57071 1507 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-204ENST00000412568 PPP1R42Q7Z4L9 355 aa13.49□□□□□ -0.25
PTPRF-204ENST00000412568 A0A087WZG4 1122 aa13.49□□□□□ -0.25
PTPRF-204ENST00000412568 NUCB2P80303 420 aa13.49□□□□□ -0.25
PTPRF-204ENST00000412568 IFNL2Q8IZJ0 200 aa13.49□□□□□ -0.25
PTPRF-204ENST00000412568 FLT4P35916 1363 aa13.49□□□□□ -0.25
PTPRF-204ENST00000412568 PHAXQ9H814 394 aaKnown RBP13.48□□□□□ -0.25
PTPRF-204ENST00000412568 NPC1L1Q9UHC9 1359 aa13.48□□□□□ -0.25
PTPRF-204ENST00000412568 KDM5CP41229 1560 aa13.48□□□□□ -0.25
PTPRF-204ENST00000412568 TRDNQ13061 729 aa13.48□□□□□ -0.25
PTPRF-204ENST00000412568 UBE3BQ7Z3V4 1068 aa13.48□□□□□ -0.25
PTPRF-204ENST00000412568 TBC1D2Q9BYX2 928 aa13.48□□□□□ -0.25
PTPRF-204ENST00000412568 KIAA2012Q0VF49 1180 aa13.47□□□□□ -0.25
PTPRF-204ENST00000412568 RABEP1Q15276 862 aa13.47□□□□□ -0.25
PTPRF-204ENST00000412568 LARP1Q6PKG0 1096 aaKnown RBP13.47□□□□□ -0.25
PTPRF-204ENST00000412568 ERC1Q8IUD2 1116 aa13.47□□□□□ -0.25
PTPRF-204ENST00000412568 LGR6Q9HBX8 967 aa13.47□□□□□ -0.25
PTPRF-204ENST00000412568 LRRFIP1Q32MZ4 808 aaKnown RBP13.47□□□□□ -0.25
PTPRF-204ENST00000412568 SEC24BO95487 1268 aa13.47□□□□□ -0.25
PTPRF-204ENST00000412568 NFXL1Q6ZNB6 911 aa13.47□□□□□ -0.25
PTPRF-204ENST00000412568 CREBRFQ8IUR6 639 aa13.47□□□□□ -0.25
PTPRF-204ENST00000412568 KIF1BPQ96EK5 621 aa13.46□□□□□ -0.25
PTPRF-204ENST00000412568 CEP126Q9P2H0 1117 aa13.46□□□□□ -0.25
PTPRF-204ENST00000412568 ERVK-7P63135 1459 aa13.46□□□□□ -0.25
PTPRF-204ENST00000412568 HTATSF1O43719 755 aaKnown RBP13.46□□□□□ -0.25
PTPRF-204ENST00000412568 COPS6Q7L5N1 327 aa13.46□□□□□ -0.25
PTPRF-204ENST00000412568 RALYLQ86SE5 291 aaKnown RBP13.46□□□□□ -0.25
PTPRF-204ENST00000412568 CHMP4CQ96CF2 233 aa13.46□□□□□ -0.25
PTPRF-204ENST00000412568 TBC1D9Q6ZT07 1266 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms