RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 HAP1P54257 671 aaPredicted RBP25.52■■□□□ 1.68
USP39-204ENST00000409766 RTF1Q92541 710 aaKnown RBP25.51■■□□□ 1.67
USP39-204ENST00000409766 KRT24Q2M2I5 525 aa25.51■■□□□ 1.67
USP39-204ENST00000409766 MYT1Q01538 1121 aa25.5■■□□□ 1.67
USP39-204ENST00000409766 API5Q9BZZ5 524 aaKnown RBP25.5■■□□□ 1.67
USP39-204ENST00000409766 CHMP4BQ9H444 224 aaKnown RBP25.5■■□□□ 1.67
USP39-204ENST00000409766 SMC5Q8IY18 1101 aa25.49■■□□□ 1.67
USP39-204ENST00000409766 ORAI2Q96SN7 254 aa25.49■■□□□ 1.67
USP39-204ENST00000409766 HTATSF1O43719 755 aaKnown RBP25.49■■□□□ 1.67
USP39-204ENST00000409766 IP6K1Q92551 441 aa25.49■■□□□ 1.67
USP39-204ENST00000409766 PHRF1Q9P1Y6 1649 aaKnown RBP25.48■■□□□ 1.67
USP39-204ENST00000409766 LRRC37A3O60309 1634 aa25.48■■□□□ 1.67
USP39-204ENST00000409766 PROSER2Q86WR7 435 aaPredicted RBP25.47■■□□□ 1.67
USP39-204ENST00000409766 KCNH5Q8NCM2 988 aa25.47■■□□□ 1.67
USP39-204ENST00000409766 LTV1Q96GA3 475 aaPredicted RBP25.47■■□□□ 1.67
USP39-204ENST00000409766 DDRGK1Q96HY6 314 aa25.45■■□□□ 1.66
USP39-204ENST00000409766 MIS18AQ9NYP9 233 aa25.45■■□□□ 1.66
USP39-204ENST00000409766 GNAT3A8MTJ3 354 aa25.44■■□□□ 1.66
USP39-204ENST00000409766 TSPYL4Q9UJ04 414 aa25.44■■□□□ 1.66
USP39-204ENST00000409766 HSPA2P54652 639 aa25.43■■□□□ 1.66
USP39-204ENST00000409766 TRPM3Q9HCF6 1732 aaPredicted RBP25.42■■□□□ 1.66
USP39-204ENST00000409766 RGS12O14924 1447 aa25.42■■□□□ 1.66
USP39-204ENST00000409766 C19orf44Q9H6X5 657 aa25.42■■□□□ 1.66
USP39-204ENST00000409766 SLIT3O75094 1523 aa25.41■■□□□ 1.66
USP39-204ENST00000409766 MSH6P52701 1360 aa25.41■■□□□ 1.66
USP39-204ENST00000409766 MAP3K5Q99683 1374 aa25.41■■□□□ 1.66
USP39-204ENST00000409766 KIF1AQ12756 1690 aa25.41■■□□□ 1.66
USP39-204ENST00000409766 C1orf167Q5SNV9 1468 aa25.41■■□□□ 1.66
USP39-204ENST00000409766 XPCQ01831 940 aaPredicted RBP25.4■■□□□ 1.66
USP39-204ENST00000409766 INTS3Q68E01 1043 aaKnown RBP25.4■■□□□ 1.66
USP39-204ENST00000409766 USHBP1Q8N6Y0 703 aa25.39■■□□□ 1.66
USP39-204ENST00000409766 LMTK3Q96Q04 1460 aa25.39■■□□□ 1.65
USP39-204ENST00000409766 NUCB1Q02818 461 aa25.39■■□□□ 1.65
USP39-204ENST00000409766 NBPF6Q5VWK0 638 aa25.39■■□□□ 1.65
USP39-204ENST00000409766 NBPF4Q96M43 638 aa25.39■■□□□ 1.65
USP39-204ENST00000409766 USP19O94966 1318 aa25.39■■□□□ 1.65
USP39-204ENST00000409766 PTPRCP08575 1304 aa25.39■■□□□ 1.65
USP39-204ENST00000409766 SEC24BO95487 1268 aa25.38■■□□□ 1.65
USP39-204ENST00000409766 GCP02774 474 aa25.38■■□□□ 1.65
USP39-204ENST00000409766 IL17REQ8NFR9 667 aa25.38■■□□□ 1.65
USP39-204ENST00000409766 C1orf115Q9H7X2 142 aa25.38■■□□□ 1.65
USP39-204ENST00000409766 RGPD2P0DJD1 1756 aa25.37■■□□□ 1.65
USP39-204ENST00000409766 ARHGEF25Q86VW2 580 aa25.36■■□□□ 1.65
USP39-204ENST00000409766 KRT28Q7Z3Y7 464 aa25.36■■□□□ 1.65
USP39-204ENST00000409766 SIRT2Q8IXJ6 389 aa25.36■■□□□ 1.65
USP39-204ENST00000409766 STRCP1A6NGW2 1772 aa25.35■■□□□ 1.65
USP39-204ENST00000409766 SLC4A2P04920 1241 aa25.35■■□□□ 1.65
USP39-204ENST00000409766 GCC1Q96CN9 775 aa25.34■■□□□ 1.65
USP39-204ENST00000409766 BABAM1Q9NWV8 329 aa25.34■■□□□ 1.65
USP39-204ENST00000409766 MST1RQ04912 1400 aa25.33■■□□□ 1.65
USP39-204ENST00000409766 ZBTB7CA1YPR0 619 aa25.33■■□□□ 1.65
USP39-204ENST00000409766 CHD1LQ86WJ1 897 aa25.32■■□□□ 1.64
USP39-204ENST00000409766 TAF7Q15545 349 aaPredicted RBP25.32■■□□□ 1.64
USP39-204ENST00000409766 TMEM94Q12767 1356 aa25.32■■□□□ 1.64
USP39-204ENST00000409766 ALS2Q96Q42 1657 aa25.31■■□□□ 1.64
USP39-204ENST00000409766 LMOD2Q6P5Q4 547 aa25.3■■□□□ 1.64
USP39-204ENST00000409766 CEMIPQ8WUJ3 1361 aa25.3■■□□□ 1.64
USP39-204ENST00000409766 NCAPD2Q15021 1401 aa25.3■■□□□ 1.64
USP39-204ENST00000409766 NCOA3Q9Y6Q9 1424 aa25.3■■□□□ 1.64
USP39-204ENST00000409766 STRCQ7RTU9 1775 aa25.3■■□□□ 1.64
USP39-204ENST00000409766 LRRC59Q96AG4 307 aaKnown RBP25.3■■□□□ 1.64
USP39-204ENST00000409766 DCCP43146 1447 aa25.29■■□□□ 1.64
USP39-204ENST00000409766 LNPKQ9C0E8 428 aa25.29■■□□□ 1.64
USP39-204ENST00000409766 SOS1Q07889 1333 aaPredicted RBP25.29■■□□□ 1.64
USP39-204ENST00000409766 FAM208AQ9UK61 1670 aaKnown RBP25.29■■□□□ 1.64
USP39-204ENST00000409766 ATF3P18847 181 aa25.29■■□□□ 1.64
USP39-204ENST00000409766 G2E3Q7L622 706 aa25.28■■□□□ 1.64
USP39-204ENST00000409766 CACNA1FO60840 1977 aa25.27■■□□□ 1.64
USP39-204ENST00000409766 MED1Q15648 1581 aaPredicted RBP25.27■■□□□ 1.64
USP39-204ENST00000409766 LMO7Q8WWI1 1683 aa25.27■■□□□ 1.64
USP39-204ENST00000409766 ANKRD45Q5TZF3 282 aa25.26■■□□□ 1.63
USP39-204ENST00000409766 CAMTA1Q9Y6Y1 1673 aa25.26■■□□□ 1.63
USP39-204ENST00000409766 ATP10DQ9P241 1426 aa25.26■■□□□ 1.63
USP39-204ENST00000409766 CCDC30Q5VVM6 783 aa25.25■■□□□ 1.63
USP39-204ENST00000409766 STK31Q9BXU1 1019 aa25.25■■□□□ 1.63
USP39-204ENST00000409766 PLEKHG5O94827 1062 aa25.25■■□□□ 1.63
USP39-204ENST00000409766 ANKRD24Q8TF21 1146 aa25.24■■□□□ 1.63
USP39-204ENST00000409766 AXIN2Q9Y2T1 843 aa25.24■■□□□ 1.63
USP39-204ENST00000409766 UPF2Q9HAU5 1272 aaKnown RBP25.24■■□□□ 1.63
USP39-204ENST00000409766 ANKRD44Q8N8A2 993 aa25.23■■□□□ 1.63
USP39-204ENST00000409766 RGPD5Q99666 1765 aa25.22■■□□□ 1.63
USP39-204ENST00000409766 SLC4A3P48751 1232 aa25.22■■□□□ 1.63
USP39-204ENST00000409766 PLEKHO1Q53GL0 409 aaPredicted RBP25.22■■□□□ 1.63
USP39-204ENST00000409766 TBC1D32Q96NH3 1257 aa25.22■■□□□ 1.63
USP39-204ENST00000409766 LGR6Q9HBX8 967 aa25.22■■□□□ 1.63
USP39-204ENST00000409766 AMOTQ4VCS5 1084 aa25.22■■□□□ 1.63
USP39-204ENST00000409766 AKAP4Q5JQC9 854 aa25.22■■□□□ 1.63
USP39-204ENST00000409766 RPAP2Q8IXW5 612 aaPredicted RBP25.22■■□□□ 1.63
USP39-204ENST00000409766 MEIS3Q99687 375 aa25.22■■□□□ 1.63
USP39-204ENST00000409766 DCTPP1Q9H773 170 aa25.22■■□□□ 1.63
USP39-204ENST00000409766 DAXXQ9UER7 740 aaPredicted RBP25.22■■□□□ 1.63
USP39-204ENST00000409766 CCT4P50991 539 aaKnown RBP25.21■■□□□ 1.63
USP39-204ENST00000409766 KDM3BQ7LBC6 1761 aa25.21■■□□□ 1.63
USP39-204ENST00000409766 F6X3S4 739 aa25.2■■□□□ 1.63
USP39-204ENST00000409766 FLIIQ13045 1269 aa25.2■■□□□ 1.62
USP39-204ENST00000409766 CEP85Q6P2H3 762 aa25.2■■□□□ 1.62
USP39-204ENST00000409766 ZNF530Q6P9A1 599 aaPredicted RBP25.2■■□□□ 1.62
USP39-204ENST00000409766 NBR1Q14596 966 aa25.19■■□□□ 1.62
USP39-204ENST00000409766 CADPS2Q86UW7 1296 aa25.19■■□□□ 1.62
USP39-204ENST00000409766 BMP2KLQ5H9B9 411 aa25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms