RNA–Protein interactions for RNA: ENST00000409472.5

SCAMP4-202, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 2 BASIC

Gene SCAMP4, Length 2,394 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-202ENST00000409472 CHL1O00533 1208 aa19.22■□□□□ 0.67
SCAMP4-202ENST00000409472 C14orf37Q86TY3 774 aa19.22■□□□□ 0.67
SCAMP4-202ENST00000409472 SMC5Q8IY18 1101 aa19.22■□□□□ 0.67
SCAMP4-202ENST00000409472 DDRGK1Q96HY6 314 aa19.22■□□□□ 0.67
SCAMP4-202ENST00000409472 HOXC9P31274 260 aa19.22■□□□□ 0.67
SCAMP4-202ENST00000409472 LTN1O94822 1766 aa19.21■□□□□ 0.67
SCAMP4-202ENST00000409472 RGS12O14924 1447 aa19.21■□□□□ 0.67
SCAMP4-202ENST00000409472 LTV1Q96GA3 475 aaPredicted RBP19.21■□□□□ 0.67
SCAMP4-202ENST00000409472 ARHGAP45Q92619 1136 aa19.2■□□□□ 0.66
SCAMP4-202ENST00000409472 PHF8Q9UPP1 1060 aa19.2■□□□□ 0.66
SCAMP4-202ENST00000409472 ADGRL3Q9HAR2 1447 aa19.19■□□□□ 0.66
SCAMP4-202ENST00000409472 SIRT2Q8IXJ6 389 aa19.19■□□□□ 0.66
SCAMP4-202ENST00000409472 USHBP1Q8N6Y0 703 aa19.19■□□□□ 0.66
SCAMP4-202ENST00000409472 USP35Q9P2H5 1018 aa19.18■□□□□ 0.66
SCAMP4-202ENST00000409472 LNPKQ9C0E8 428 aa19.17■□□□□ 0.66
SCAMP4-202ENST00000409472 LRRC37A3O60309 1634 aa19.17■□□□□ 0.66
SCAMP4-202ENST00000409472 NPHP4O75161 1426 aaPredicted RBP19.17■□□□□ 0.66
SCAMP4-202ENST00000409472 PLEKHG5O94827 1062 aa19.17■□□□□ 0.66
SCAMP4-202ENST00000409472 SETD1BQ9UPS6 1966 aaKnown RBP19.16■□□□□ 0.66
SCAMP4-202ENST00000409472 XPCQ01831 940 aaPredicted RBP19.16■□□□□ 0.66
SCAMP4-202ENST00000409472 NFAT5O94916 1531 aa19.16■□□□□ 0.66
SCAMP4-202ENST00000409472 ESCO1Q5FWF5 840 aa19.15■□□□□ 0.66
SCAMP4-202ENST00000409472 KIAA0232Q92628 1395 aa19.15■□□□□ 0.66
SCAMP4-202ENST00000409472 NUCB1Q02818 461 aa19.14■□□□□ 0.66
SCAMP4-202ENST00000409472 ORAI2Q96SN7 254 aa19.13■□□□□ 0.65
SCAMP4-202ENST00000409472 API5Q9BZZ5 524 aaKnown RBP19.13■□□□□ 0.65
SCAMP4-202ENST00000409472 TSPYL4Q9UJ04 414 aa19.13■□□□□ 0.65
SCAMP4-202ENST00000409472 RGPD2P0DJD1 1756 aa19.13■□□□□ 0.65
SCAMP4-202ENST00000409472 RTF1Q92541 710 aaKnown RBP19.13■□□□□ 0.65
SCAMP4-202ENST00000409472 MSH6P52701 1360 aa19.13■□□□□ 0.65
SCAMP4-202ENST00000409472 ZBTB7CA1YPR0 619 aa19.12■□□□□ 0.65
SCAMP4-202ENST00000409472 G2E3Q7L622 706 aa19.11■□□□□ 0.65
SCAMP4-202ENST00000409472 CHD1LQ86WJ1 897 aa19.11■□□□□ 0.65
SCAMP4-202ENST00000409472 GAS2L2Q8NHY3 880 aa19.11■□□□□ 0.65
SCAMP4-202ENST00000409472 TBC1D32Q96NH3 1257 aa19.1■□□□□ 0.65
SCAMP4-202ENST00000409472 KIF24Q5T7B8 1368 aa19.1■□□□□ 0.65
SCAMP4-202ENST00000409472 ATP10DQ9P241 1426 aa19.09■□□□□ 0.65
SCAMP4-202ENST00000409472 SLC4A2P04920 1241 aa19.09■□□□□ 0.65
SCAMP4-202ENST00000409472 PSME1Q06323 249 aa19.09■□□□□ 0.65
SCAMP4-202ENST00000409472 ANKRD45Q5TZF3 282 aa19.08■□□□□ 0.65
SCAMP4-202ENST00000409472 INTS3Q68E01 1043 aaKnown RBP19.08■□□□□ 0.65
SCAMP4-202ENST00000409472 IL17REQ8NFR9 667 aa19.08■□□□□ 0.65
SCAMP4-202ENST00000409472 FAM208AQ9UK61 1670 aaKnown RBP19.08■□□□□ 0.65
SCAMP4-202ENST00000409472 RTL1A6NKG5 1358 aa19.08■□□□□ 0.64
SCAMP4-202ENST00000409472 NBPF6Q5VWK0 638 aa19.07■□□□□ 0.64
SCAMP4-202ENST00000409472 NBPF4Q96M43 638 aa19.07■□□□□ 0.64
SCAMP4-202ENST00000409472 DAXXQ9UER7 740 aaPredicted RBP19.07■□□□□ 0.64
SCAMP4-202ENST00000409472 MAP3K5Q99683 1374 aa19.07■□□□□ 0.64
SCAMP4-202ENST00000409472 GNAT3A8MTJ3 354 aa19.07■□□□□ 0.64
SCAMP4-202ENST00000409472 F6X3S4 739 aa19.07■□□□□ 0.64
SCAMP4-202ENST00000409472 MFAP1P55081 439 aaKnown RBP19.07■□□□□ 0.64
SCAMP4-202ENST00000409472 NECTIN2Q92692 538 aa19.07■□□□□ 0.64
SCAMP4-202ENST00000409472 EIF5BO60841 1220 aaKnown RBP19.06■□□□□ 0.64
SCAMP4-202ENST00000409472 LRRC59Q96AG4 307 aaKnown RBP19.06■□□□□ 0.64
SCAMP4-202ENST00000409472 PKNOX2Q96KN3 472 aa19.06■□□□□ 0.64
SCAMP4-202ENST00000409472 MEIS3Q99687 375 aa19.06■□□□□ 0.64
SCAMP4-202ENST00000409472 IP6K1Q92551 441 aa19.05■□□□□ 0.64
SCAMP4-202ENST00000409472 GCC1Q96CN9 775 aa19.04■□□□□ 0.64
SCAMP4-202ENST00000409472 PTPRCP08575 1304 aa19.03■□□□□ 0.64
SCAMP4-202ENST00000409472 TRPM3Q9HCF6 1732 aaPredicted RBP19.03■□□□□ 0.64
SCAMP4-202ENST00000409472 CHMP4BQ9H444 224 aaKnown RBP19.03■□□□□ 0.64
SCAMP4-202ENST00000409472 UPF2Q9HAU5 1272 aaKnown RBP19.03■□□□□ 0.64
SCAMP4-202ENST00000409472 LMOD2Q6P5Q4 547 aa19.02■□□□□ 0.64
SCAMP4-202ENST00000409472 PHRF1Q9P1Y6 1649 aaKnown RBP19.02■□□□□ 0.63
SCAMP4-202ENST00000409472 SLC4A10Q6U841 1118 aa19.01■□□□□ 0.63
SCAMP4-202ENST00000409472 HAP1P54257 671 aaPredicted RBP19.01■□□□□ 0.63
SCAMP4-202ENST00000409472 CEP85Q6P2H3 762 aa19.01■□□□□ 0.63
SCAMP4-202ENST00000409472 PXDNQ92626 1479 aa19■□□□□ 0.63
SCAMP4-202ENST00000409472 SLIT3O75094 1523 aa19■□□□□ 0.63
SCAMP4-202ENST00000409472 HTATSF1O43719 755 aaKnown RBP19■□□□□ 0.63
SCAMP4-202ENST00000409472 NFKBIBQ15653 356 aa19■□□□□ 0.63
SCAMP4-202ENST00000409472 STRCP1A6NGW2 1772 aa19■□□□□ 0.63
SCAMP4-202ENST00000409472 PROSER2Q86WR7 435 aaPredicted RBP18.99■□□□□ 0.63
SCAMP4-202ENST00000409472 C22orf23Q9BZE7 217 aa18.99■□□□□ 0.63
SCAMP4-202ENST00000409472 LGR6Q9HBX8 967 aa18.99■□□□□ 0.63
SCAMP4-202ENST00000409472 GCP02774 474 aa18.99■□□□□ 0.63
SCAMP4-202ENST00000409472 ANKRD44Q8N8A2 993 aa18.99■□□□□ 0.63
SCAMP4-202ENST00000409472 OTUD7AQ8TE49 926 aaPredicted RBP18.99■□□□□ 0.63
SCAMP4-202ENST00000409472 TBC1D2Q9BYX2 928 aa18.99■□□□□ 0.63
SCAMP4-202ENST00000409472 MED1Q15648 1581 aaPredicted RBP18.98■□□□□ 0.63
SCAMP4-202ENST00000409472 C16orf71Q8IYS4 520 aaPredicted RBP18.98■□□□□ 0.63
SCAMP4-202ENST00000409472 DDX17Q92841 729 aaKnown RBP18.98■□□□□ 0.63
SCAMP4-202ENST00000409472 C1orf167Q5SNV9 1468 aa18.98■□□□□ 0.63
SCAMP4-202ENST00000409472 APBB1O00213 710 aa18.98■□□□□ 0.63
SCAMP4-202ENST00000409472 BMP2KLQ5H9B9 411 aa18.98■□□□□ 0.63
SCAMP4-202ENST00000409472 SLKQ9H2G2 1235 aaPredicted RBP18.98■□□□□ 0.63
SCAMP4-202ENST00000409472 DCTPP1Q9H773 170 aa18.98■□□□□ 0.63
SCAMP4-202ENST00000409472 RGPD5Q99666 1765 aa18.98■□□□□ 0.63
SCAMP4-202ENST00000409472 KCNH5Q8NCM2 988 aa18.97■□□□□ 0.63
SCAMP4-202ENST00000409472 CEMIPQ8WUJ3 1361 aa18.97■□□□□ 0.63
SCAMP4-202ENST00000409472 GSPT1P15170 499 aaKnown RBP18.97■□□□□ 0.63
SCAMP4-202ENST00000409472 FLIIQ13045 1269 aa18.97■□□□□ 0.63
SCAMP4-202ENST00000409472 TAF7Q15545 349 aaPredicted RBP18.97■□□□□ 0.63
SCAMP4-202ENST00000409472 ARHGEF25Q86VW2 580 aa18.97■□□□□ 0.63
SCAMP4-202ENST00000409472 AXIN2Q9Y2T1 843 aa18.97■□□□□ 0.63
SCAMP4-202ENST00000409472 SMARCA5O60264 1052 aaPredicted RBP18.96■□□□□ 0.63
SCAMP4-202ENST00000409472 KCNQ3O43525 872 aa18.96■□□□□ 0.63
SCAMP4-202ENST00000409472 LMO7Q8WWI1 1683 aa18.95■□□□□ 0.62
SCAMP4-202ENST00000409472 STK31Q9BXU1 1019 aa18.95■□□□□ 0.62
SCAMP4-202ENST00000409472 KDM3BQ7LBC6 1761 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms