RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 SBF2Q86WG5 1849 aa29.34■■■□□ 2.29
CLN3-207ENST00000395653 PPP2R1AP30153 589 aa29.32■■■□□ 2.28
CLN3-207ENST00000395653 BAG6P46379 1132 aa29.32■■■□□ 2.28
CLN3-207ENST00000395653 DDX54Q8TDD1 881 aaKnown RBP29.32■■■□□ 2.28
CLN3-207ENST00000395653 COL3A1P02461 1466 aaPredicted RBP29.32■■■□□ 2.28
CLN3-207ENST00000395653 PKD1L3Q7Z443 1732 aa29.32■■■□□ 2.28
CLN3-207ENST00000395653 DEFB132Q7Z7B7 95 aa29.3■■■□□ 2.28
CLN3-207ENST00000395653 ZNF316A6NFI3 1004 aaPredicted RBP29.29■■■□□ 2.28
CLN3-207ENST00000395653 DIAPH1O60610 1272 aaKnown RBP29.29■■■□□ 2.28
CLN3-207ENST00000395653 PCDH11XQ9BZA7 1347 aa29.29■■■□□ 2.28
CLN3-207ENST00000395653 PCDH11YQ9BZA8 1340 aa29.29■■■□□ 2.28
CLN3-207ENST00000395653 KDRP35968 1356 aa29.29■■■□□ 2.28
CLN3-207ENST00000395653 BCL11BQ9C0K0 894 aaPredicted RBP29.28■■■□□ 2.28
CLN3-207ENST00000395653 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.28■■■□□ 2.28
CLN3-207ENST00000395653 NHSQ6T4R5 1651 aa29.27■■■□□ 2.28
CLN3-207ENST00000395653 CFAP53Q96M91 514 aa29.27■■■□□ 2.28
CLN3-207ENST00000395653 APBA3O96018 575 aa29.26■■■□□ 2.27
CLN3-207ENST00000395653 SPG7Q9UQ90 795 aa29.26■■■□□ 2.27
CLN3-207ENST00000395653 SULT6B1Q6IMI4 303 aa29.24■■■□□ 2.27
CLN3-207ENST00000395653 AEBP1Q8IUX7 1158 aa29.24■■■□□ 2.27
CLN3-207ENST00000395653 EN1Q05925 392 aaPredicted RBP29.23■■■□□ 2.27
CLN3-207ENST00000395653 RALBP1Q15311 655 aa29.23■■■□□ 2.27
CLN3-207ENST00000395653 CYP27B1O15528 508 aa29.22■■■□□ 2.27
CLN3-207ENST00000395653 ACSBG1Q96GR2 724 aa29.22■■■□□ 2.27
CLN3-207ENST00000395653 PTF1AQ7RTS3 328 aa29.21■■■□□ 2.27
CLN3-207ENST00000395653 KCNQ2O43526 872 aa29.2■■■□□ 2.27
CLN3-207ENST00000395653 CAMKK2Q96RR4 588 aa29.2■■■□□ 2.26
CLN3-207ENST00000395653 DOT1LQ8TEK3 1739 aa29.19■■■□□ 2.26
CLN3-207ENST00000395653 RGPD3A6NKT7 1758 aaPredicted RBP29.18■■■□□ 2.26
CLN3-207ENST00000395653 RGPD4Q7Z3J3 1758 aa29.18■■■□□ 2.26
CLN3-207ENST00000395653 AMOTQ4VCS5 1084 aa29.18■■■□□ 2.26
CLN3-207ENST00000395653 PLSCR1O15162 318 aa29.17■■■□□ 2.26
CLN3-207ENST00000395653 EZH2Q15910 746 aaKnown RBP29.17■■■□□ 2.26
CLN3-207ENST00000395653 PLEKHO1Q53GL0 409 aaPredicted RBP29.17■■■□□ 2.26
CLN3-207ENST00000395653 U2SURPO15042 1029 aaKnown RBP29.16■■■□□ 2.26
CLN3-207ENST00000395653 HMOX1P09601 288 aa29.16■■■□□ 2.26
CLN3-207ENST00000395653 NKX1-1Q15270 411 aaPredicted RBP29.16■■■□□ 2.26
CLN3-207ENST00000395653 IFNL2Q8IZJ0 200 aa29.16■■■□□ 2.26
CLN3-207ENST00000395653 PHKG2P15735 406 aa29.15■■■□□ 2.26
CLN3-207ENST00000395653 NUDCQ9Y266 331 aa29.14■■■□□ 2.26
CLN3-207ENST00000395653 PRIM1P49642 420 aaKnown RBP29.13■■■□□ 2.25
CLN3-207ENST00000395653 RREB1Q92766 1687 aa29.13■■■□□ 2.25
CLN3-207ENST00000395653 BTAF1O14981 1849 aa29.13■■■□□ 2.25
CLN3-207ENST00000395653 SYTL4Q96C24 671 aaPredicted RBP29.11■■■□□ 2.25
CLN3-207ENST00000395653 MYBBP1AQ9BQG0 1328 aaKnown RBP29.11■■■□□ 2.25
CLN3-207ENST00000395653 TOGARAM1Q9Y4F4 1720 aa29.11■■■□□ 2.25
CLN3-207ENST00000395653 ZNF530Q6P9A1 599 aaPredicted RBP29.1■■■□□ 2.25
CLN3-207ENST00000395653 KAT6BQ8WYB5 2073 aa29.09■■■□□ 2.25
CLN3-207ENST00000395653 PRKRIP1Q9H875 184 aaPredicted RBP29.09■■■□□ 2.25
CLN3-207ENST00000395653 HSP90AB1P08238 724 aaKnown RBP29.08■■■□□ 2.25
CLN3-207ENST00000395653 NUP188Q5SRE5 1749 aa29.06■■■□□ 2.24
CLN3-207ENST00000395653 C1orf141Q5JVX7 400 aa29.05■■■□□ 2.24
CLN3-207ENST00000395653 U2AF1L5P0DN76 240 aaPredicted RBP29.04■■■□□ 2.24
CLN3-207ENST00000395653 U2AF1Q01081 240 aaKnown RBP eCLIP29.04■■■□□ 2.24
CLN3-207ENST00000395653 DCAF5Q96JK2 942 aa29.03■■■□□ 2.24
CLN3-207ENST00000395653 RSPH6AQ9H0K4 717 aa29.03■■■□□ 2.24
CLN3-207ENST00000395653 TXNRD1Q16881 649 aa29.03■■■□□ 2.24
CLN3-207ENST00000395653 PROM2Q8N271 834 aa29.03■■■□□ 2.24
CLN3-207ENST00000395653 ITGB4P16144 1822 aa29.02■■■□□ 2.24
CLN3-207ENST00000395653 MPRIPQ6WCQ1 1025 aa29.02■■■□□ 2.24
CLN3-207ENST00000395653 KDM6AO15550 1401 aaPredicted RBP29.01■■■□□ 2.23
CLN3-207ENST00000395653 FCHSD2O94868 740 aa29.01■■■□□ 2.23
CLN3-207ENST00000395653 MTHFSDQ2M296 383 aaKnown RBP29.01■■■□□ 2.23
CLN3-207ENST00000395653 AKAP4Q5JQC9 854 aa29.01■■■□□ 2.23
CLN3-207ENST00000395653 PRKAR2BP31323 418 aa29■■■□□ 2.23
CLN3-207ENST00000395653 ERVV-2B6SEH9 535 aa28.99■■■□□ 2.23
CLN3-207ENST00000395653 TMOD3Q9NYL9 352 aa28.98■■■□□ 2.23
CLN3-207ENST00000395653 PIGBQ92521 554 aa28.97■■■□□ 2.23
CLN3-207ENST00000395653 LY75O60449 1722 aa28.97■■■□□ 2.23
CLN3-207ENST00000395653 NBPF14Q5TI25 921 aa28.96■■■□□ 2.23
CLN3-207ENST00000395653 GAS2L2Q8NHY3 880 aa28.96■■■□□ 2.23
CLN3-207ENST00000395653 SLC27A3Q5K4L6 730 aa28.94■■■□□ 2.22
CLN3-207ENST00000395653 PHACTR3Q96KR7 559 aa28.94■■■□□ 2.22
CLN3-207ENST00000395653 SCN11AQ9UI33 1791 aa28.93■■■□□ 2.22
CLN3-207ENST00000395653 PALLDQ8WX93 1383 aa28.93■■■□□ 2.22
CLN3-207ENST00000395653 SMARCC1Q92922 1105 aaPredicted RBP28.93■■■□□ 2.22
CLN3-207ENST00000395653 ADAMTS7Q9UKP4 1686 aa28.93■■■□□ 2.22
CLN3-207ENST00000395653 CABP4P57796 275 aa28.92■■■□□ 2.22
CLN3-207ENST00000395653 PAPPAQ13219 1627 aa28.91■■■□□ 2.22
CLN3-207ENST00000395653 MAP3K5Q99683 1374 aa28.91■■■□□ 2.22
CLN3-207ENST00000395653 LRRC4BQ9NT99 713 aa28.9■■■□□ 2.22
CLN3-207ENST00000395653 R3HDM1Q15032 1099 aaKnown RBP28.89■■■□□ 2.22
CLN3-207ENST00000395653 ANO8Q9HCE9 1232 aaPredicted RBP28.89■■■□□ 2.22
CLN3-207ENST00000395653 MRC1P22897 1456 aa28.89■■■□□ 2.21
CLN3-207ENST00000395653 PSDA5PKW4 1024 aaPredicted RBP28.88■■■□□ 2.21
CLN3-207ENST00000395653 GNAT3A8MTJ3 354 aa28.88■■■□□ 2.21
CLN3-207ENST00000395653 RNMTO43148 476 aaKnown RBP28.88■■■□□ 2.21
CLN3-207ENST00000395653 PNNQ9H307 717 aaKnown RBP28.88■■■□□ 2.21
CLN3-207ENST00000395653 CCNL1Q9UK58 526 aaPredicted RBP28.88■■■□□ 2.21
CLN3-207ENST00000395653 ANP32CO43423 234 aa28.87■■■□□ 2.21
CLN3-207ENST00000395653 LGR6Q9HBX8 967 aa28.87■■■□□ 2.21
CLN3-207ENST00000395653 NEFMP07197 916 aa28.86■■■□□ 2.21
CLN3-207ENST00000395653 PLEKHF1Q96S99 279 aa28.86■■■□□ 2.21
CLN3-207ENST00000395653 NFATC2IPQ8NCF5 419 aa28.86■■■□□ 2.21
CLN3-207ENST00000395653 ASAP1Q9ULH1 1129 aa28.86■■■□□ 2.21
CLN3-207ENST00000395653 VIRMAQ69YN4 1812 aaKnown RBP28.85■■■□□ 2.21
CLN3-207ENST00000395653 SLC52A2Q9HAB3 445 aa28.85■■■□□ 2.21
CLN3-207ENST00000395653 ATG3Q9NT62 314 aa28.85■■■□□ 2.21
CLN3-207ENST00000395653 STK32BQ9NY57 414 aa28.85■■■□□ 2.21
CLN3-207ENST00000395653 HMGB2P26583 209 aaKnown RBP28.83■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms