RNA–Protein interactions for RNA: ENST00000393408.7

CBX1-202, Transcript of chromobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX1, Length 2,422 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1-202ENST00000393408 ISY1Q9ULR0 285 aaKnown RBP23.39■■□□□ 1.33
CBX1-202ENST00000393408 TTC21BQ7Z4L5 1316 aa23.38■■□□□ 1.33
CBX1-202ENST00000393408 PEAK1Q9H792 1746 aa23.38■■□□□ 1.33
CBX1-202ENST00000393408 ROBO2Q9HCK4 1378 aa23.38■■□□□ 1.33
CBX1-202ENST00000393408 HDGFP51858 240 aaKnown RBP23.38■■□□□ 1.33
CBX1-202ENST00000393408 RPAP2Q8IXW5 612 aaPredicted RBP23.38■■□□□ 1.33
CBX1-202ENST00000393408 GAS2L2Q8NHY3 880 aa23.37■■□□□ 1.33
CBX1-202ENST00000393408 FOXD4L1Q9NU39 408 aa23.37■■□□□ 1.33
CBX1-202ENST00000393408 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.36■■□□□ 1.33
CBX1-202ENST00000393408 CEP85Q6P2H3 762 aa23.36■■□□□ 1.33
CBX1-202ENST00000393408 MCM10Q7L590 875 aa23.36■■□□□ 1.33
CBX1-202ENST00000393408 C16orf71Q8IYS4 520 aaPredicted RBP23.36■■□□□ 1.33
CBX1-202ENST00000393408 GRPEL1Q9HAV7 217 aa23.35■■□□□ 1.33
CBX1-202ENST00000393408 PTPRCP08575 1304 aa23.35■■□□□ 1.33
CBX1-202ENST00000393408 MSH6P52701 1360 aa23.35■■□□□ 1.33
CBX1-202ENST00000393408 PTMSP20962 102 aa23.35■■□□□ 1.33
CBX1-202ENST00000393408 RTL1A6NKG5 1358 aa23.35■■□□□ 1.33
CBX1-202ENST00000393408 SKOR2Q2VWA4 1001 aaPredicted RBP23.34■■□□□ 1.33
CBX1-202ENST00000393408 UBR1Q8IWV7 1749 aa23.34■■□□□ 1.33
CBX1-202ENST00000393408 ACEP12821 1306 aa23.34■■□□□ 1.33
CBX1-202ENST00000393408 RABEP1Q15276 862 aa23.33■■□□□ 1.33
CBX1-202ENST00000393408 CRB1P82279 1406 aa23.33■■□□□ 1.33
CBX1-202ENST00000393408 TMEM2Q9UHN6 1383 aa23.33■■□□□ 1.33
CBX1-202ENST00000393408 ADAMTS13Q76LX8 1427 aa23.32■■□□□ 1.32
CBX1-202ENST00000393408 TNRQ92752 1358 aa23.32■■□□□ 1.32
CBX1-202ENST00000393408 OTUD7AQ8TE49 926 aaPredicted RBP23.32■■□□□ 1.32
CBX1-202ENST00000393408 USP6P35125 1406 aa23.32■■□□□ 1.32
CBX1-202ENST00000393408 PLEKHG3A1L390 1219 aa23.32■■□□□ 1.32
CBX1-202ENST00000393408 HSP90AB2PQ58FF8 381 aa23.32■■□□□ 1.32
CBX1-202ENST00000393408 USP26Q9BXU7 913 aa23.32■■□□□ 1.32
CBX1-202ENST00000393408 ESF1Q9H501 851 aaKnown RBP23.32■■□□□ 1.32
CBX1-202ENST00000393408 CLEC17AQ6ZS10 378 aa23.31■■□□□ 1.32
CBX1-202ENST00000393408 USP31Q70CQ4 1352 aa23.31■■□□□ 1.32
CBX1-202ENST00000393408 SSFA2P28290 1259 aa23.31■■□□□ 1.32
CBX1-202ENST00000393408 MEIS3Q99687 375 aa23.3■■□□□ 1.32
CBX1-202ENST00000393408 FMN2Q9NZ56 1722 aa23.29■■□□□ 1.32
CBX1-202ENST00000393408 SDSP20132 328 aa23.28■■□□□ 1.32
CBX1-202ENST00000393408 GAS2L3Q86XJ1 694 aa23.28■■□□□ 1.32
CBX1-202ENST00000393408 ARHGEF10O15013 1369 aa23.27■■□□□ 1.32
CBX1-202ENST00000393408 SMARCA5O60264 1052 aaPredicted RBP23.27■■□□□ 1.32
CBX1-202ENST00000393408 SSH2Q76I76 1423 aa23.26■■□□□ 1.31
CBX1-202ENST00000393408 AK9Q5TCS8 1911 aa23.26■■□□□ 1.31
CBX1-202ENST00000393408 SLC4A2P04920 1241 aa23.26■■□□□ 1.31
CBX1-202ENST00000393408 RIMS1Q86UR5 1692 aaKnown RBP23.25■■□□□ 1.31
CBX1-202ENST00000393408 NUTM2FA1L443 756 aa23.24■■□□□ 1.31
CBX1-202ENST00000393408 CASC1Q6TDU7 716 aa23.24■■□□□ 1.31
CBX1-202ENST00000393408 MAP3K19Q56UN5 1328 aa23.24■■□□□ 1.31
CBX1-202ENST00000393408 APBB1O00213 710 aa23.24■■□□□ 1.31
CBX1-202ENST00000393408 BAG4O95429 457 aaKnown RBP23.24■■□□□ 1.31
CBX1-202ENST00000393408 GOLGA6L22H0YM25 854 aa23.23■■□□□ 1.31
CBX1-202ENST00000393408 CLCN1P35523 988 aa23.23■■□□□ 1.31
CBX1-202ENST00000393408 MIS18AQ9NYP9 233 aa23.23■■□□□ 1.31
CBX1-202ENST00000393408 PLEKHG1Q9ULL1 1385 aa23.23■■□□□ 1.31
CBX1-202ENST00000393408 FOXO3O43524 673 aa23.22■■□□□ 1.31
CBX1-202ENST00000393408 HMMRO75330 724 aa23.22■■□□□ 1.31
CBX1-202ENST00000393408 MTHFSDQ2M296 383 aaKnown RBP23.22■■□□□ 1.31
CBX1-202ENST00000393408 G2E3Q7L622 706 aa23.22■■□□□ 1.31
CBX1-202ENST00000393408 SOX12O15370 315 aa23.2■■□□□ 1.3
CBX1-202ENST00000393408 CYP2E1P05181 493 aaPredicted RBP23.2■■□□□ 1.3
CBX1-202ENST00000393408 CCT4P50991 539 aaKnown RBP23.2■■□□□ 1.3
CBX1-202ENST00000393408 TSPYL4Q9UJ04 414 aa23.2■■□□□ 1.3
CBX1-202ENST00000393408 KDRP35968 1356 aa23.2■■□□□ 1.3
CBX1-202ENST00000393408 NUCB2P80303 420 aa23.2■■□□□ 1.3
CBX1-202ENST00000393408 KLHL40Q2TBA0 621 aa23.2■■□□□ 1.3
CBX1-202ENST00000393408 OSBPL3Q9H4L5 887 aa23.2■■□□□ 1.3
CBX1-202ENST00000393408 PTPRUQ92729 1446 aa23.19■■□□□ 1.3
CBX1-202ENST00000393408 TTC21AQ8NDW8 1320 aa23.19■■□□□ 1.3
CBX1-202ENST00000393408 REC8O95072 547 aa23.19■■□□□ 1.3
CBX1-202ENST00000393408 LTKP29376 864 aa23.19■■□□□ 1.3
CBX1-202ENST00000393408 SBNO1A3KN83 1393 aa23.19■■□□□ 1.3
CBX1-202ENST00000393408 FLT4P35916 1363 aa23.19■■□□□ 1.3
CBX1-202ENST00000393408 F6X3S4 739 aa23.19■■□□□ 1.3
CBX1-202ENST00000393408 RTF1Q92541 710 aaKnown RBP23.19■■□□□ 1.3
CBX1-202ENST00000393408 IBTKQ9P2D0 1353 aaPredicted RBP23.18■■□□□ 1.3
CBX1-202ENST00000393408 SLC4A10Q6U841 1118 aa23.18■■□□□ 1.3
CBX1-202ENST00000393408 ERC2O15083 957 aa23.17■■□□□ 1.3
CBX1-202ENST00000393408 ST18O60284 1047 aa23.17■■□□□ 1.3
CBX1-202ENST00000393408 TUBGCP6Q96RT7 1819 aa23.17■■□□□ 1.3
CBX1-202ENST00000393408 CEP170BQ9Y4F5 1589 aaPredicted RBP23.17■■□□□ 1.3
CBX1-202ENST00000393408 PDE1AP54750 535 aa23.17■■□□□ 1.3
CBX1-202ENST00000393408 CWC22Q9HCG8 908 aaKnown RBP23.16■■□□□ 1.3
CBX1-202ENST00000393408 DDX49Q9Y6V7 483 aaKnown RBP23.16■■□□□ 1.3
CBX1-202ENST00000393408 KIF13AQ9H1H9 1805 aa23.16■■□□□ 1.3
CBX1-202ENST00000393408 LRRC37A3O60309 1634 aa23.16■■□□□ 1.3
CBX1-202ENST00000393408 FAM208AQ9UK61 1670 aaKnown RBP23.15■■□□□ 1.3
CBX1-202ENST00000393408 IGSF1Q8N6C5 1336 aa23.15■■□□□ 1.3
CBX1-202ENST00000393408 GNAI2P04899 355 aa23.14■■□□□ 1.29
CBX1-202ENST00000393408 XRN1Q8IZH2 1706 aaKnown RBP23.13■■□□□ 1.29
CBX1-202ENST00000393408 ESPNB1AK53 854 aa23.13■■□□□ 1.29
CBX1-202ENST00000393408 EYA1Q99502 592 aa23.13■■□□□ 1.29
CBX1-202ENST00000393408 SALL3Q9BXA9 1300 aa23.13■■□□□ 1.29
CBX1-202ENST00000393408 PKP1Q13835 747 aa23.13■■□□□ 1.29
CBX1-202ENST00000393408 MCTP1Q6DN14 999 aa23.13■■□□□ 1.29
CBX1-202ENST00000393408 RGPD8O14715 1765 aaPredicted RBP23.12■■□□□ 1.29
CBX1-202ENST00000393408 ERBB4Q15303 1308 aa23.12■■□□□ 1.29
CBX1-202ENST00000393408 PIK3C2AO00443 1686 aa23.12■■□□□ 1.29
CBX1-202ENST00000393408 ZGPATQ8N5A5 531 aaKnown RBP23.11■■□□□ 1.29
CBX1-202ENST00000393408 SLC26A8Q96RN1 970 aa23.11■■□□□ 1.29
CBX1-202ENST00000393408 STK31Q9BXU1 1019 aa23.11■■□□□ 1.29
CBX1-202ENST00000393408 LMBRD1Q9NUN5 540 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms