RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 DDIT3P35638 169 aa21.94■■□□□ 1.1
SQSTM1-202ENST00000389805 NASPP49321 788 aaPredicted RBP21.94■■□□□ 1.1
SQSTM1-202ENST00000389805 LMOD3Q0VAK6 560 aa21.93■■□□□ 1.1
SQSTM1-202ENST00000389805 DLG5Q8TDM6 1919 aa21.93■■□□□ 1.1
SQSTM1-202ENST00000389805 CD2BP2O95400 341 aaKnown RBP21.93■■□□□ 1.1
SQSTM1-202ENST00000389805 FAM13BQ9NYF5 915 aa21.93■■□□□ 1.1
SQSTM1-202ENST00000389805 AKAP12Q02952 1782 aa21.93■■□□□ 1.1
SQSTM1-202ENST00000389805 NUCB1Q02818 461 aa21.92■■□□□ 1.1
SQSTM1-202ENST00000389805 ITSN1Q15811 1721 aa21.92■■□□□ 1.1
SQSTM1-202ENST00000389805 USP6P35125 1406 aa21.92■■□□□ 1.1
SQSTM1-202ENST00000389805 MIS18AQ9NYP9 233 aa21.92■■□□□ 1.1
SQSTM1-202ENST00000389805 RAB3GAP1Q15042 981 aa21.91■■□□□ 1.1
SQSTM1-202ENST00000389805 SIRT2Q8IXJ6 389 aa21.91■■□□□ 1.1
SQSTM1-202ENST00000389805 FOXO3O43524 673 aa21.91■■□□□ 1.1
SQSTM1-202ENST00000389805 MSNP26038 577 aaKnown RBP21.91■■□□□ 1.1
SQSTM1-202ENST00000389805 ANKRD45Q5TZF3 282 aa21.91■■□□□ 1.1
SQSTM1-202ENST00000389805 SSFA2P28290 1259 aa21.9■■□□□ 1.1
SQSTM1-202ENST00000389805 ARHGAP45Q92619 1136 aa21.9■■□□□ 1.1
SQSTM1-202ENST00000389805 RBM42Q9BTD8 480 aaKnown RBP21.9■■□□□ 1.1
SQSTM1-202ENST00000389805 R3HCC1Q9Y3T6 440 aaKnown RBP21.9■■□□□ 1.1
SQSTM1-202ENST00000389805 ZSCAN30Q86W11 494 aa21.9■■□□□ 1.1
SQSTM1-202ENST00000389805 CHD1LQ86WJ1 897 aa21.9■■□□□ 1.1
SQSTM1-202ENST00000389805 NGDNQ8NEJ9 315 aaKnown RBP21.9■■□□□ 1.1
SQSTM1-202ENST00000389805 CCDC173Q0VFZ6 552 aa21.9■■□□□ 1.1
SQSTM1-202ENST00000389805 OVOS2A0A0J9YW53 1432 aa21.89■■□□□ 1.1
SQSTM1-202ENST00000389805 OVOS2Q6IE36 1432 aa21.89■■□□□ 1.1
SQSTM1-202ENST00000389805 NUTM2GQ5VZR2 741 aa21.89■■□□□ 1.1
SQSTM1-202ENST00000389805 ANP32BQ92688 251 aaKnown RBP21.89■■□□□ 1.1
SQSTM1-202ENST00000389805 MAP3K19Q56UN5 1328 aa21.89■■□□□ 1.09
SQSTM1-202ENST00000389805 SKOR2Q2VWA4 1001 aaPredicted RBP21.88■■□□□ 1.09
SQSTM1-202ENST00000389805 DDX49Q9Y6V7 483 aaKnown RBP21.88■■□□□ 1.09
SQSTM1-202ENST00000389805 NCLP19338 710 aaKnown RBP21.88■■□□□ 1.09
SQSTM1-202ENST00000389805 ABCC4O15439 1325 aa21.88■■□□□ 1.09
SQSTM1-202ENST00000389805 PTCH1Q13635 1447 aa21.87■■□□□ 1.09
SQSTM1-202ENST00000389805 NCOA3Q9Y6Q9 1424 aa21.86■■□□□ 1.09
SQSTM1-202ENST00000389805 OFD1O75665 1012 aa21.86■■□□□ 1.09
SQSTM1-202ENST00000389805 RBM25P49756 843 aaKnown RBP21.86■■□□□ 1.09
SQSTM1-202ENST00000389805 SNX21Q969T3 373 aa21.86■■□□□ 1.09
SQSTM1-202ENST00000389805 TBX22Q9Y458 520 aa21.85■■□□□ 1.09
SQSTM1-202ENST00000389805 CHL1O00533 1208 aa21.84■■□□□ 1.09
SQSTM1-202ENST00000389805 PIK3R4Q99570 1358 aa21.84■■□□□ 1.09
SQSTM1-202ENST00000389805 RBM33Q96EV2 1170 aaKnown RBP21.84■■□□□ 1.09
SQSTM1-202ENST00000389805 PPP1R9BQ96SB3 815 aa21.84■■□□□ 1.09
SQSTM1-202ENST00000389805 PEAK1Q9H792 1746 aa21.84■■□□□ 1.09
SQSTM1-202ENST00000389805 CIZ1Q9ULV3 898 aaPredicted RBP21.84■■□□□ 1.09
SQSTM1-202ENST00000389805 XPCQ01831 940 aaPredicted RBP21.83■■□□□ 1.09
SQSTM1-202ENST00000389805 MTHFSDQ2M296 383 aaKnown RBP21.83■■□□□ 1.09
SQSTM1-202ENST00000389805 API5Q9BZZ5 524 aaKnown RBP21.83■■□□□ 1.08
SQSTM1-202ENST00000389805 KCNA6P17658 529 aa21.82■■□□□ 1.08
SQSTM1-202ENST00000389805 GAS2L2Q8NHY3 880 aa21.82■■□□□ 1.08
SQSTM1-202ENST00000389805 KIF2CQ99661 725 aa21.82■■□□□ 1.08
SQSTM1-202ENST00000389805 SSH2Q76I76 1423 aa21.82■■□□□ 1.08
SQSTM1-202ENST00000389805 NRKQ7Z2Y5 1582 aa21.82■■□□□ 1.08
SQSTM1-202ENST00000389805 AMPHP49418 695 aa21.82■■□□□ 1.08
SQSTM1-202ENST00000389805 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.82■■□□□ 1.08
SQSTM1-202ENST00000389805 THEMISQ8N1K5 641 aaPredicted RBP21.82■■□□□ 1.08
SQSTM1-202ENST00000389805 USP31Q70CQ4 1352 aa21.82■■□□□ 1.08
SQSTM1-202ENST00000389805 NLRP6P59044 892 aa21.81■■□□□ 1.08
SQSTM1-202ENST00000389805 GOLGA6L22H0YM25 854 aa21.81■■□□□ 1.08
SQSTM1-202ENST00000389805 EYA1Q99502 592 aa21.81■■□□□ 1.08
SQSTM1-202ENST00000389805 CAVIN1Q6NZI2 390 aaKnown RBP21.8■■□□□ 1.08
SQSTM1-202ENST00000389805 GCC1Q96CN9 775 aa21.8■■□□□ 1.08
SQSTM1-202ENST00000389805 TOPAZ1Q8N9V7 1692 aa21.8■■□□□ 1.08
SQSTM1-202ENST00000389805 ZBTB7CA1YPR0 619 aa21.79■■□□□ 1.08
SQSTM1-202ENST00000389805 K7ELQ4 463 aaPredicted RBP21.79■■□□□ 1.08
SQSTM1-202ENST00000389805 BAG4O95429 457 aaKnown RBP21.78■■□□□ 1.08
SQSTM1-202ENST00000389805 MCTP1Q6DN14 999 aa21.78■■□□□ 1.08
SQSTM1-202ENST00000389805 RGPD8O14715 1765 aaPredicted RBP21.78■■□□□ 1.08
SQSTM1-202ENST00000389805 CHMP4BQ9H444 224 aaKnown RBP21.78■■□□□ 1.08
SQSTM1-202ENST00000389805 PRDM4Q9UKN5 801 aa21.78■■□□□ 1.08
SQSTM1-202ENST00000389805 SLC4A2P04920 1241 aa21.77■■□□□ 1.08
SQSTM1-202ENST00000389805 LTV1Q96GA3 475 aaPredicted RBP21.77■■□□□ 1.08
SQSTM1-202ENST00000389805 PODXL2Q9NZ53 605 aa21.77■■□□□ 1.08
SQSTM1-202ENST00000389805 TTC21AQ8NDW8 1320 aa21.77■■□□□ 1.07
SQSTM1-202ENST00000389805 AK9Q5TCS8 1911 aa21.76■■□□□ 1.07
SQSTM1-202ENST00000389805 UQCRHLA0A096LP55 91 aa21.76■■□□□ 1.07
SQSTM1-202ENST00000389805 UQCRHP07919 91 aa21.76■■□□□ 1.07
SQSTM1-202ENST00000389805 KLHL40Q2TBA0 621 aa21.76■■□□□ 1.07
SQSTM1-202ENST00000389805 ARHGAP23Q9P227 1491 aa21.76■■□□□ 1.07
SQSTM1-202ENST00000389805 C16orf71Q8IYS4 520 aaPredicted RBP21.75■■□□□ 1.07
SQSTM1-202ENST00000389805 RTF1Q92541 710 aaKnown RBP21.75■■□□□ 1.07
SQSTM1-202ENST00000389805 APBB1O00213 710 aa21.75■■□□□ 1.07
SQSTM1-202ENST00000389805 G2E3Q7L622 706 aa21.75■■□□□ 1.07
SQSTM1-202ENST00000389805 TSPYL4Q9UJ04 414 aa21.75■■□□□ 1.07
SQSTM1-202ENST00000389805 CRB1P82279 1406 aa21.75■■□□□ 1.07
SQSTM1-202ENST00000389805 TRHP20396 242 aaPredicted RBP21.75■■□□□ 1.07
SQSTM1-202ENST00000389805 BMP2KLQ5H9B9 411 aa21.75■■□□□ 1.07
SQSTM1-202ENST00000389805 INTS3Q68E01 1043 aaKnown RBP21.75■■□□□ 1.07
SQSTM1-202ENST00000389805 C14orf37Q86TY3 774 aa21.75■■□□□ 1.07
SQSTM1-202ENST00000389805 RBSNQ9H1K0 784 aa21.75■■□□□ 1.07
SQSTM1-202ENST00000389805 RIMS1Q86UR5 1692 aaKnown RBP21.74■■□□□ 1.07
SQSTM1-202ENST00000389805 SLIT1O75093 1534 aa21.74■■□□□ 1.07
SQSTM1-202ENST00000389805 FLT4P35916 1363 aa21.74■■□□□ 1.07
SQSTM1-202ENST00000389805 PTMSP20962 102 aa21.74■■□□□ 1.07
SQSTM1-202ENST00000389805 F6X3S4 739 aa21.74■■□□□ 1.07
SQSTM1-202ENST00000389805 MEIS3Q99687 375 aa21.73■■□□□ 1.07
SQSTM1-202ENST00000389805 PRDM10Q9NQV6 1147 aa21.73■■□□□ 1.07
SQSTM1-202ENST00000389805 RGS12O14924 1447 aa21.73■■□□□ 1.07
SQSTM1-202ENST00000389805 SBNO1A3KN83 1393 aa21.73■■□□□ 1.07
SQSTM1-202ENST00000389805 DIP2AQ14689 1571 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms