RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 TEX14Q8IWB6 1497 aa11.29□□□□□ -0.6
PTPRA-204ENST00000380393 NUTM2DQ5VT03 806 aaPredicted RBP11.29□□□□□ -0.6
PTPRA-204ENST00000380393 MED4Q9NPJ6 270 aa11.29□□□□□ -0.6
PTPRA-204ENST00000380393 RBM27Q9P2N5 1060 aaKnown RBP11.29□□□□□ -0.6
PTPRA-204ENST00000380393 PLA2R1Q13018 1463 aa11.29□□□□□ -0.6
PTPRA-204ENST00000380393 BIRC2Q13490 618 aa11.29□□□□□ -0.6
PTPRA-204ENST00000380393 FBXO31Q5XUX0 539 aaPredicted RBP11.29□□□□□ -0.6
PTPRA-204ENST00000380393 RBM28Q9NW13 759 aaKnown RBP11.29□□□□□ -0.6
PTPRA-204ENST00000380393 SYCE3A1L190 88 aa11.29□□□□□ -0.6
PTPRA-204ENST00000380393 TTC36A6NLP5 189 aa11.29□□□□□ -0.6
PTPRA-204ENST00000380393 E2F4Q16254 413 aa11.29□□□□□ -0.6
PTPRA-204ENST00000380393 LRSAM1Q6UWE0 723 aa11.29□□□□□ -0.6
PTPRA-204ENST00000380393 ZNF446Q9NWS9 450 aa11.29□□□□□ -0.6
PTPRA-204ENST00000380393 CFAP74Q9C0B2 1584 aa11.28□□□□□ -0.6
PTPRA-204ENST00000380393 BCAR3O75815 825 aa11.28□□□□□ -0.6
PTPRA-204ENST00000380393 PPP2R5AQ15172 486 aa11.28□□□□□ -0.6
PTPRA-204ENST00000380393 CCDC189A1A4V9 331 aa11.28□□□□□ -0.6
PTPRA-204ENST00000380393 SYCP1Q15431 976 aa11.28□□□□□ -0.6
PTPRA-204ENST00000380393 NEK11Q8NG66 645 aa11.28□□□□□ -0.6
PTPRA-204ENST00000380393 A0A1B0GUL7 405 aa11.27□□□□□ -0.6
PTPRA-204ENST00000380393 ARID4AP29374 1257 aaPredicted RBP11.27□□□□□ -0.6
PTPRA-204ENST00000380393 DIP2CQ9Y2E4 1556 aa11.27□□□□□ -0.6
PTPRA-204ENST00000380393 EIF3AQ14152 1382 aaKnown RBP11.27□□□□□ -0.61
PTPRA-204ENST00000380393 ATP2B1P20020 1258 aa11.27□□□□□ -0.61
PTPRA-204ENST00000380393 KRBA2Q6ZNG9 492 aa11.27□□□□□ -0.61
PTPRA-204ENST00000380393 LCMT1Q9UIC8 334 aa11.27□□□□□ -0.61
PTPRA-204ENST00000380393 PPP6R1Q9UPN7 881 aa11.27□□□□□ -0.61
PTPRA-204ENST00000380393 NPC1L1Q9UHC9 1359 aa11.27□□□□□ -0.61
PTPRA-204ENST00000380393 NAA30Q147X3 362 aaPredicted RBP11.27□□□□□ -0.61
PTPRA-204ENST00000380393 TTC31Q49AM3 519 aaPredicted RBP11.27□□□□□ -0.61
PTPRA-204ENST00000380393 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.27□□□□□ -0.61
PTPRA-204ENST00000380393 GOLGA2Q08379 1002 aa11.26□□□□□ -0.61
PTPRA-204ENST00000380393 MUM1L1Q5H9M0 696 aa11.26□□□□□ -0.61
PTPRA-204ENST00000380393 NFATC2IPQ8NCF5 419 aa11.26□□□□□ -0.61
PTPRA-204ENST00000380393 SETQ01105 290 aaPredicted RBP11.26□□□□□ -0.61
PTPRA-204ENST00000380393 CCDC191Q8NCU4 936 aa11.26□□□□□ -0.61
PTPRA-204ENST00000380393 TERF2IPQ9NYB0 399 aa11.26□□□□□ -0.61
PTPRA-204ENST00000380393 COG6Q9Y2V7 657 aa11.26□□□□□ -0.61
PTPRA-204ENST00000380393 KANK1Q14678 1352 aa11.26□□□□□ -0.61
PTPRA-204ENST00000380393 UGGT1Q9NYU2 1555 aa11.26□□□□□ -0.61
PTPRA-204ENST00000380393 NBPF10Q6P3W6 841 aaKnown RBP11.26□□□□□ -0.61
PTPRA-204ENST00000380393 MPHOSPH10O00566 681 aaKnown RBP11.25□□□□□ -0.61
PTPRA-204ENST00000380393 HMGB1P09429 215 aaKnown RBP11.25□□□□□ -0.61
PTPRA-204ENST00000380393 ATP6V1AP38606 617 aa11.25□□□□□ -0.61
PTPRA-204ENST00000380393 POLR1AO95602 1720 aaPredicted RBP11.25□□□□□ -0.61
PTPRA-204ENST00000380393 CALRP27797 417 aaKnown RBP11.25□□□□□ -0.61
PTPRA-204ENST00000380393 CEBPAP49715 358 aaPredicted RBP11.25□□□□□ -0.61
PTPRA-204ENST00000380393 NBPF6Q5VWK0 638 aa11.25□□□□□ -0.61
PTPRA-204ENST00000380393 NBPF5PQ86XG9 351 aaPredicted RBP11.25□□□□□ -0.61
PTPRA-204ENST00000380393 TXLNBQ8N3L3 684 aa11.25□□□□□ -0.61
PTPRA-204ENST00000380393 ZNF397Q8NF99 534 aaPredicted RBP11.25□□□□□ -0.61
PTPRA-204ENST00000380393 SNX21Q969T3 373 aa11.25□□□□□ -0.61
PTPRA-204ENST00000380393 NBPF4Q96M43 638 aa11.25□□□□□ -0.61
PTPRA-204ENST00000380393 SIGLEC1Q9BZZ2 1709 aa11.25□□□□□ -0.61
PTPRA-204ENST00000380393 PPP1R12AO14974 1030 aaPredicted RBP11.24□□□□□ -0.61
PTPRA-204ENST00000380393 PRDM16Q9HAZ2 1276 aa11.24□□□□□ -0.61
PTPRA-204ENST00000380393 CCDC144AA2RUR9 1427 aa11.24□□□□□ -0.61
PTPRA-204ENST00000380393 ANAPC15P60006 121 aa11.24□□□□□ -0.61
PTPRA-204ENST00000380393 RPAINQ86UA6 219 aa11.24□□□□□ -0.61
PTPRA-204ENST00000380393 ZNF513Q8N8E2 541 aaPredicted RBP11.24□□□□□ -0.61
PTPRA-204ENST00000380393 LMBRD1Q9NUN5 540 aa11.24□□□□□ -0.61
PTPRA-204ENST00000380393 UNC13BO14795 1591 aa11.24□□□□□ -0.61
PTPRA-204ENST00000380393 NEUROD2Q15784 382 aa11.24□□□□□ -0.61
PTPRA-204ENST00000380393 TSGA10IPQ3SY00 556 aa11.24□□□□□ -0.61
PTPRA-204ENST00000380393 PANK1Q8TE04 598 aa11.24□□□□□ -0.61
PTPRA-204ENST00000380393 CWC15Q9P013 229 aaKnown RBP11.24□□□□□ -0.61
PTPRA-204ENST00000380393 MROH1Q8NDA8 1641 aa11.23□□□□□ -0.61
PTPRA-204ENST00000380393 NOM1Q5C9Z4 860 aaKnown RBP11.23□□□□□ -0.61
PTPRA-204ENST00000380393 MAP2K2P36507 400 aa11.23□□□□□ -0.61
PTPRA-204ENST00000380393 TEX35Q5T0J7 233 aa11.23□□□□□ -0.61
PTPRA-204ENST00000380393 DUSP27Q5VZP5 1158 aa11.23□□□□□ -0.61
PTPRA-204ENST00000380393 ATP10AO60312 1499 aa11.23□□□□□ -0.61
PTPRA-204ENST00000380393 PRPF40AO75400 957 aaKnown RBP11.23□□□□□ -0.61
PTPRA-204ENST00000380393 CLEC17AQ6ZS10 378 aa11.23□□□□□ -0.61
PTPRA-204ENST00000380393 KMT5BQ4FZB7 885 aa11.22□□□□□ -0.61
PTPRA-204ENST00000380393 ANKRD20A12PQ8NF67 263 aa11.22□□□□□ -0.61
PTPRA-204ENST00000380393 RAD50Q92878 1312 aa11.22□□□□□ -0.61
PTPRA-204ENST00000380393 KDM5DQ9BY66 1539 aa11.22□□□□□ -0.61
PTPRA-204ENST00000380393 TMEM63CQ9P1W3 806 aa11.22□□□□□ -0.61
PTPRA-204ENST00000380393 PDZRN3Q9UPQ7 1066 aa11.22□□□□□ -0.61
PTPRA-204ENST00000380393 LRRFIP2Q9Y608 721 aaKnown RBP11.22□□□□□ -0.61
PTPRA-204ENST00000380393 AK9Q5TCS8 1911 aa11.22□□□□□ -0.61
PTPRA-204ENST00000380393 GSCP56915 257 aaPredicted RBP11.22□□□□□ -0.61
PTPRA-204ENST00000380393 PACS2Q86VP3 889 aa11.22□□□□□ -0.61
PTPRA-204ENST00000380393 OTUD6BQ8N6M0 293 aa11.22□□□□□ -0.61
PTPRA-204ENST00000380393 CLUAP1Q96AJ1 413 aa11.22□□□□□ -0.61
PTPRA-204ENST00000380393 USP25Q9UHP3 1055 aa11.22□□□□□ -0.61
PTPRA-204ENST00000380393 RRP15Q9Y3B9 282 aaKnown RBP11.22□□□□□ -0.61
PTPRA-204ENST00000380393 MRVI1Q9Y6F6 885 aa11.22□□□□□ -0.61
PTPRA-204ENST00000380393 BCORL1Q5H9F3 1711 aa11.22□□□□□ -0.61
PTPRA-204ENST00000380393 ZSCAN26Q16670 478 aa11.21□□□□□ -0.61
PTPRA-204ENST00000380393 GTF3C6Q969F1 213 aa11.21□□□□□ -0.61
PTPRA-204ENST00000380393 TSPY26PQ9H489 355 aa11.21□□□□□ -0.61
PTPRA-204ENST00000380393 MAGI2Q86UL8 1455 aa11.21□□□□□ -0.61
PTPRA-204ENST00000380393 IQGAP3Q86VI3 1631 aa11.21□□□□□ -0.61
PTPRA-204ENST00000380393 NPATQ14207 1427 aa11.21□□□□□ -0.61
PTPRA-204ENST00000380393 RBM6P78332 1123 aaKnown RBP11.21□□□□□ -0.61
PTPRA-204ENST00000380393 SRLQ86TD4 932 aa11.21□□□□□ -0.61
PTPRA-204ENST00000380393 KIAA1524Q8TCG1 905 aa11.21□□□□□ -0.61
PTPRA-204ENST00000380393 CEP152O94986 1710 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms