RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 EYA1Q99502 592 aa16.88■□□□□ 0.29
CCDC3-202ENST00000378839 TBC1D2Q9BYX2 928 aa16.88■□□□□ 0.29
CCDC3-202ENST00000378839 MFAP1P55081 439 aaKnown RBP16.87■□□□□ 0.29
CCDC3-202ENST00000378839 SBNO1A3KN83 1393 aa16.86■□□□□ 0.29
CCDC3-202ENST00000378839 ARHGEF10O15013 1369 aa16.86■□□□□ 0.29
CCDC3-202ENST00000378839 ANKRD45Q5TZF3 282 aa16.86■□□□□ 0.29
CCDC3-202ENST00000378839 ANTXR1Q9H6X2 564 aa16.86■□□□□ 0.29
CCDC3-202ENST00000378839 FLT4P35916 1363 aa16.85■□□□□ 0.29
CCDC3-202ENST00000378839 KDRP35968 1356 aa16.85■□□□□ 0.29
CCDC3-202ENST00000378839 SLKQ9H2G2 1235 aaPredicted RBP16.84■□□□□ 0.29
CCDC3-202ENST00000378839 C22orf23Q9BZE7 217 aa16.84■□□□□ 0.29
CCDC3-202ENST00000378839 IGSF1Q8N6C5 1336 aa16.84■□□□□ 0.29
CCDC3-202ENST00000378839 NWD1Q149M9 1564 aa16.84■□□□□ 0.29
CCDC3-202ENST00000378839 NLRP6P59044 892 aa16.83■□□□□ 0.29
CCDC3-202ENST00000378839 API5Q9BZZ5 524 aaKnown RBP16.83■□□□□ 0.29
CCDC3-202ENST00000378839 INTS3Q68E01 1043 aaKnown RBP16.83■□□□□ 0.28
CCDC3-202ENST00000378839 UPF2Q9HAU5 1272 aaKnown RBP16.83■□□□□ 0.28
CCDC3-202ENST00000378839 KIAA0232Q92628 1395 aa16.82■□□□□ 0.28
CCDC3-202ENST00000378839 AMPHP49418 695 aa16.82■□□□□ 0.28
CCDC3-202ENST00000378839 G2E3Q7L622 706 aa16.82■□□□□ 0.28
CCDC3-202ENST00000378839 ATP10DQ9P241 1426 aa16.82■□□□□ 0.28
CCDC3-202ENST00000378839 GCC1Q96CN9 775 aa16.81■□□□□ 0.28
CCDC3-202ENST00000378839 HOXC9P31274 260 aa16.81■□□□□ 0.28
CCDC3-202ENST00000378839 ANKARQ7Z5J8 1434 aa16.8■□□□□ 0.28
CCDC3-202ENST00000378839 SPRYD3Q8NCJ5 442 aa16.8■□□□□ 0.28
CCDC3-202ENST00000378839 MSH6P52701 1360 aa16.8■□□□□ 0.28
CCDC3-202ENST00000378839 BECN1Q14457 450 aa16.79■□□□□ 0.28
CCDC3-202ENST00000378839 C16orf71Q8IYS4 520 aaPredicted RBP16.79■□□□□ 0.28
CCDC3-202ENST00000378839 SLC4A2P04920 1241 aa16.79■□□□□ 0.28
CCDC3-202ENST00000378839 BMP2KLQ5H9B9 411 aa16.79■□□□□ 0.28
CCDC3-202ENST00000378839 MEIS3Q99687 375 aa16.79■□□□□ 0.28
CCDC3-202ENST00000378839 KIF24Q5T7B8 1368 aa16.78■□□□□ 0.28
CCDC3-202ENST00000378839 F6X3S4 739 aa16.77■□□□□ 0.28
CCDC3-202ENST00000378839 ABTB2Q8N961 1025 aa16.77■□□□□ 0.28
CCDC3-202ENST00000378839 TSPYL4Q9UJ04 414 aa16.77■□□□□ 0.28
CCDC3-202ENST00000378839 GSPT1P15170 499 aaKnown RBP16.77■□□□□ 0.28
CCDC3-202ENST00000378839 USHBP1Q8N6Y0 703 aa16.77■□□□□ 0.28
CCDC3-202ENST00000378839 OTUD7AQ8TE49 926 aaPredicted RBP16.77■□□□□ 0.28
CCDC3-202ENST00000378839 LTV1Q96GA3 475 aaPredicted RBP16.77■□□□□ 0.28
CCDC3-202ENST00000378839 DCTPP1Q9H773 170 aa16.77■□□□□ 0.28
CCDC3-202ENST00000378839 RTL1A6NKG5 1358 aa16.76■□□□□ 0.27
CCDC3-202ENST00000378839 CEP85Q6P2H3 762 aa16.76■□□□□ 0.27
CCDC3-202ENST00000378839 KIF2CQ99661 725 aa16.76■□□□□ 0.27
CCDC3-202ENST00000378839 IL17REQ8NFR9 667 aa16.76■□□□□ 0.27
CCDC3-202ENST00000378839 USP54Q70EL1 1684 aa16.76■□□□□ 0.27
CCDC3-202ENST00000378839 LRRC37A3O60309 1634 aa16.76■□□□□ 0.27
CCDC3-202ENST00000378839 GSE1Q14687 1217 aa16.75■□□□□ 0.27
CCDC3-202ENST00000378839 PLEKHM2Q8IWE5 1019 aa16.75■□□□□ 0.27
CCDC3-202ENST00000378839 CHMP4BQ9H444 224 aaKnown RBP16.75■□□□□ 0.27
CCDC3-202ENST00000378839 CHD2O14647 1828 aaKnown RBP16.75■□□□□ 0.27
CCDC3-202ENST00000378839 TBC1D9Q6ZT07 1266 aa16.75■□□□□ 0.27
CCDC3-202ENST00000378839 ANKRD44Q8N8A2 993 aa16.75■□□□□ 0.27
CCDC3-202ENST00000378839 RBM25P49756 843 aaKnown RBP16.75■□□□□ 0.27
CCDC3-202ENST00000378839 RTF1Q92541 710 aaKnown RBP16.75■□□□□ 0.27
CCDC3-202ENST00000378839 PTPRCP08575 1304 aa16.74■□□□□ 0.27
CCDC3-202ENST00000378839 KDM4FA0A1W2PPD8 638 aa16.73■□□□□ 0.27
CCDC3-202ENST00000378839 SMARCA5O60264 1052 aaPredicted RBP16.73■□□□□ 0.27
CCDC3-202ENST00000378839 PHF8Q9UPP1 1060 aa16.73■□□□□ 0.27
CCDC3-202ENST00000378839 GAS2L2Q8NHY3 880 aa16.72■□□□□ 0.27
CCDC3-202ENST00000378839 NECTIN2Q92692 538 aa16.72■□□□□ 0.27
CCDC3-202ENST00000378839 CD2BP2O95400 341 aaKnown RBP16.71■□□□□ 0.27
CCDC3-202ENST00000378839 C14orf37Q86TY3 774 aa16.71■□□□□ 0.27
CCDC3-202ENST00000378839 ZNF142P52746 1687 aaPredicted RBP16.71■□□□□ 0.27
CCDC3-202ENST00000378839 GNAT3A8MTJ3 354 aa16.71■□□□□ 0.27
CCDC3-202ENST00000378839 SLC4A10Q6U841 1118 aa16.71■□□□□ 0.26
CCDC3-202ENST00000378839 LTN1O94822 1766 aa16.7■□□□□ 0.26
CCDC3-202ENST00000378839 NFAT5O94916 1531 aa16.7■□□□□ 0.26
CCDC3-202ENST00000378839 ANKLE2Q86XL3 938 aa16.7■□□□□ 0.26
CCDC3-202ENST00000378839 APBB1O00213 710 aa16.7■□□□□ 0.26
CCDC3-202ENST00000378839 BRPF3Q9ULD4 1205 aa16.7■□□□□ 0.26
CCDC3-202ENST00000378839 SETD1BQ9UPS6 1966 aaKnown RBP16.7■□□□□ 0.26
CCDC3-202ENST00000378839 RBM42Q9BTD8 480 aaKnown RBP16.69■□□□□ 0.26
CCDC3-202ENST00000378839 NBPF6Q5VWK0 638 aa16.69■□□□□ 0.26
CCDC3-202ENST00000378839 NBPF4Q96M43 638 aa16.69■□□□□ 0.26
CCDC3-202ENST00000378839 RPAP2Q8IXW5 612 aaPredicted RBP16.69■□□□□ 0.26
CCDC3-202ENST00000378839 MAP3K5Q99683 1374 aa16.68■□□□□ 0.26
CCDC3-202ENST00000378839 FAM208AQ9UK61 1670 aaKnown RBP16.68■□□□□ 0.26
CCDC3-202ENST00000378839 HTATSF1O43719 755 aaKnown RBP16.68■□□□□ 0.26
CCDC3-202ENST00000378839 HAP1P54257 671 aaPredicted RBP16.68■□□□□ 0.26
CCDC3-202ENST00000378839 ESCO1Q5FWF5 840 aa16.67■□□□□ 0.26
CCDC3-202ENST00000378839 TTC22Q5TAA0 569 aa16.67■□□□□ 0.26
CCDC3-202ENST00000378839 DDIT3P35638 169 aa16.67■□□□□ 0.26
CCDC3-202ENST00000378839 XPCQ01831 940 aaPredicted RBP16.67■□□□□ 0.26
CCDC3-202ENST00000378839 RGPD2P0DJD1 1756 aa16.67■□□□□ 0.26
CCDC3-202ENST00000378839 ORAI2Q96SN7 254 aa16.67■□□□□ 0.26
CCDC3-202ENST00000378839 NCOA3Q9Y6Q9 1424 aa16.66■□□□□ 0.26
CCDC3-202ENST00000378839 IP6K1Q92551 441 aa16.66■□□□□ 0.26
CCDC3-202ENST00000378839 LGR6Q9HBX8 967 aa16.66■□□□□ 0.26
CCDC3-202ENST00000378839 FLIIQ13045 1269 aa16.66■□□□□ 0.26
CCDC3-202ENST00000378839 LRRC59Q96AG4 307 aaKnown RBP16.66■□□□□ 0.26
CCDC3-202ENST00000378839 PLEKHG5O94827 1062 aa16.65■□□□□ 0.26
CCDC3-202ENST00000378839 ADGRL3Q9HAR2 1447 aa16.65■□□□□ 0.26
CCDC3-202ENST00000378839 CDC45O75419 566 aa16.64■□□□□ 0.25
CCDC3-202ENST00000378839 TAF7Q15545 349 aaPredicted RBP16.64■□□□□ 0.25
CCDC3-202ENST00000378839 SNX21Q969T3 373 aa16.64■□□□□ 0.25
CCDC3-202ENST00000378839 ZBTB7CA1YPR0 619 aa16.63■□□□□ 0.25
CCDC3-202ENST00000378839 KCNQ3O43525 872 aa16.63■□□□□ 0.25
CCDC3-202ENST00000378839 PSME1Q06323 249 aa16.63■□□□□ 0.25
CCDC3-202ENST00000378839 SDSP20132 328 aa16.63■□□□□ 0.25
CCDC3-202ENST00000378839 CCT4P50991 539 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms