RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 CPS1P31327 1500 aa20.19■□□□□ 0.82
SDC4-201ENST00000372733 LMBRD1Q9NUN5 540 aa20.19■□□□□ 0.82
SDC4-201ENST00000372733 RIMBP3CA6NJZ7 1639 aa20.18■□□□□ 0.82
SDC4-201ENST00000372733 RIMBP3BA6NNM3 1639 aa20.18■□□□□ 0.82
SDC4-201ENST00000372733 RIMBP3Q9UFD9 1639 aa20.18■□□□□ 0.82
SDC4-201ENST00000372733 AATKQ6ZMQ8 1374 aa20.18■□□□□ 0.82
SDC4-201ENST00000372733 AEBP1Q8IUX7 1158 aa20.18■□□□□ 0.82
SDC4-201ENST00000372733 ZSCAN23Q3MJ62 389 aa20.18■□□□□ 0.82
SDC4-201ENST00000372733 ANP32BQ92688 251 aaKnown RBP20.18■□□□□ 0.82
SDC4-201ENST00000372733 ZNF445P59923 1031 aa20.17■□□□□ 0.82
SDC4-201ENST00000372733 COG3Q96JB2 828 aa20.17■□□□□ 0.82
SDC4-201ENST00000372733 RRP9O43818 475 aaKnown RBP20.17■□□□□ 0.82
SDC4-201ENST00000372733 MEIS3Q99687 375 aa20.17■□□□□ 0.82
SDC4-201ENST00000372733 RTL1A6NKG5 1358 aa20.16■□□□□ 0.82
SDC4-201ENST00000372733 ZSCAN30Q86W11 494 aa20.16■□□□□ 0.82
SDC4-201ENST00000372733 WASLO00401 505 aaPredicted RBP20.16■□□□□ 0.82
SDC4-201ENST00000372733 CHAMP1Q96JM3 812 aa20.16■□□□□ 0.82
SDC4-201ENST00000372733 RPAP2Q8IXW5 612 aaPredicted RBP20.15■□□□□ 0.82
SDC4-201ENST00000372733 RBM27Q9P2N5 1060 aaKnown RBP20.15■□□□□ 0.82
SDC4-201ENST00000372733 ST18O60284 1047 aa20.14■□□□□ 0.82
SDC4-201ENST00000372733 CASC1Q6TDU7 716 aa20.14■□□□□ 0.82
SDC4-201ENST00000372733 SETD1AO15047 1707 aaKnown RBP20.14■□□□□ 0.81
SDC4-201ENST00000372733 MCM10Q7L590 875 aa20.13■□□□□ 0.81
SDC4-201ENST00000372733 RBSNQ9H1K0 784 aa20.13■□□□□ 0.81
SDC4-201ENST00000372733 ZDHHC9Q9Y397 364 aa20.13■□□□□ 0.81
SDC4-201ENST00000372733 PRPF40AO75400 957 aaKnown RBP20.13■□□□□ 0.81
SDC4-201ENST00000372733 KIAA1211Q6ZU35 1233 aa20.13■□□□□ 0.81
SDC4-201ENST00000372733 SULT6B1Q6IMI4 303 aa20.12■□□□□ 0.81
SDC4-201ENST00000372733 GPT2Q8TD30 523 aa20.12■□□□□ 0.81
SDC4-201ENST00000372733 NUDT16Q96DE0 195 aaKnown RBP20.12■□□□□ 0.81
SDC4-201ENST00000372733 A2ML1A8K2U0 1454 aa20.12■□□□□ 0.81
SDC4-201ENST00000372733 CWC22Q9HCG8 908 aaKnown RBP20.12■□□□□ 0.81
SDC4-201ENST00000372733 TPM2P07951 284 aa20.11■□□□□ 0.81
SDC4-201ENST00000372733 PRIM1P49642 420 aaKnown RBP20.11■□□□□ 0.81
SDC4-201ENST00000372733 GLIPR1L2Q4G1C9 344 aa20.11■□□□□ 0.81
SDC4-201ENST00000372733 REC8O95072 547 aa20.1■□□□□ 0.81
SDC4-201ENST00000372733 MSNP26038 577 aaKnown RBP20.1■□□□□ 0.81
SDC4-201ENST00000372733 EIF4A2Q14240 407 aaKnown RBP20.1■□□□□ 0.81
SDC4-201ENST00000372733 FOXD4L5Q5VV16 416 aaPredicted RBP20.1■□□□□ 0.81
SDC4-201ENST00000372733 TXNDC2Q86VQ3 553 aa20.1■□□□□ 0.81
SDC4-201ENST00000372733 FOXD4L4Q8WXT5 416 aaPredicted RBP20.1■□□□□ 0.81
SDC4-201ENST00000372733 CHL1O00533 1208 aa20.1■□□□□ 0.81
SDC4-201ENST00000372733 ERC2O15083 957 aa20.09■□□□□ 0.81
SDC4-201ENST00000372733 MON2Q7Z3U7 1717 aa20.09■□□□□ 0.81
SDC4-201ENST00000372733 NRKQ7Z2Y5 1582 aa20.09■□□□□ 0.81
SDC4-201ENST00000372733 CYB5RLQ6IPT4 315 aa20.08■□□□□ 0.81
SDC4-201ENST00000372733 METP08581 1390 aa20.08■□□□□ 0.81
SDC4-201ENST00000372733 PTPRCP08575 1304 aa20.08■□□□□ 0.8
SDC4-201ENST00000372733 TSHZ3Q63HK5 1081 aa20.07■□□□□ 0.8
SDC4-201ENST00000372733 OFD1O75665 1012 aa20.07■□□□□ 0.8
SDC4-201ENST00000372733 NSFL1CQ9UNZ2 370 aaKnown RBP20.07■□□□□ 0.8
SDC4-201ENST00000372733 CCDC61Q9Y6R9 512 aa20.07■□□□□ 0.8
SDC4-201ENST00000372733 C3P01024 1663 aa20.07■□□□□ 0.8
SDC4-201ENST00000372733 KIAA0232Q92628 1395 aa20.06■□□□□ 0.8
SDC4-201ENST00000372733 TMEM63CQ9P1W3 806 aa20.06■□□□□ 0.8
SDC4-201ENST00000372733 F6X3S4 739 aa20.06■□□□□ 0.8
SDC4-201ENST00000372733 SLC4A2P04920 1241 aa20.06■□□□□ 0.8
SDC4-201ENST00000372733 HAP1P54257 671 aaPredicted RBP20.06■□□□□ 0.8
SDC4-201ENST00000372733 MIS18AQ9NYP9 233 aa20.06■□□□□ 0.8
SDC4-201ENST00000372733 PDE1AP54750 535 aa20.06■□□□□ 0.8
SDC4-201ENST00000372733 SLC4A10Q6U841 1118 aa20.06■□□□□ 0.8
SDC4-201ENST00000372733 PDLIM2Q96JY6 352 aa20.05■□□□□ 0.8
SDC4-201ENST00000372733 NRXN3Q9Y4C0 1643 aa20.05■□□□□ 0.8
SDC4-201ENST00000372733 G2E3Q7L622 706 aa20.05■□□□□ 0.8
SDC4-201ENST00000372733 VSIG10Q8N0Z9 540 aa20.05■□□□□ 0.8
SDC4-201ENST00000372733 PRR36Q9H6K5 1346 aa20.04■□□□□ 0.8
SDC4-201ENST00000372733 SYCE3A1L190 88 aa20.04■□□□□ 0.8
SDC4-201ENST00000372733 NEK4P51957 841 aa20.04■□□□□ 0.8
SDC4-201ENST00000372733 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.04■□□□□ 0.8
SDC4-201ENST00000372733 HMMRO75330 724 aa20.04■□□□□ 0.8
SDC4-201ENST00000372733 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.04■□□□□ 0.8
SDC4-201ENST00000372733 TMX3Q96JJ7 454 aa20.04■□□□□ 0.8
SDC4-201ENST00000372733 EXOC6BQ9Y2D4 811 aa20.03■□□□□ 0.8
SDC4-201ENST00000372733 AKAP12Q02952 1782 aa20.03■□□□□ 0.8
SDC4-201ENST00000372733 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.03■□□□□ 0.8
SDC4-201ENST00000372733 ITSN1Q15811 1721 aa20.03■□□□□ 0.8
SDC4-201ENST00000372733 NOL8Q76FK4 1167 aaKnown RBP20.02■□□□□ 0.8
SDC4-201ENST00000372733 CRB1P82279 1406 aa20.02■□□□□ 0.79
SDC4-201ENST00000372733 HS1BP3Q53T59 392 aa20.01■□□□□ 0.79
SDC4-201ENST00000372733 HSP90AB2PQ58FF8 381 aa20.01■□□□□ 0.79
SDC4-201ENST00000372733 LRSAM1Q6UWE0 723 aa20.01■□□□□ 0.79
SDC4-201ENST00000372733 OSBPL3Q9H4L5 887 aa20.01■□□□□ 0.79
SDC4-201ENST00000372733 NOL7Q9UMY1 257 aaKnown RBP20.01■□□□□ 0.79
SDC4-201ENST00000372733 PALD1Q9ULE6 856 aa20.01■□□□□ 0.79
SDC4-201ENST00000372733 SOX12O15370 315 aa20■□□□□ 0.79
SDC4-201ENST00000372733 XPCQ01831 940 aaPredicted RBP20■□□□□ 0.79
SDC4-201ENST00000372733 FOXO3O43524 673 aa20■□□□□ 0.79
SDC4-201ENST00000372733 SPATA31D1Q6ZQQ2 1576 aa19.99■□□□□ 0.79
SDC4-201ENST00000372733 ESYT1Q9BSJ8 1104 aa19.99■□□□□ 0.79
SDC4-201ENST00000372733 R3HCC1Q9Y3T6 440 aaKnown RBP19.99■□□□□ 0.79
SDC4-201ENST00000372733 RNF214Q8ND24 703 aa19.99■□□□□ 0.79
SDC4-201ENST00000372733 PEAK1Q9H792 1746 aa19.98■□□□□ 0.79
SDC4-201ENST00000372733 MLECQ14165 292 aa19.98■□□□□ 0.79
SDC4-201ENST00000372733 TTC21BQ7Z4L5 1316 aa19.98■□□□□ 0.79
SDC4-201ENST00000372733 SALL3Q9BXA9 1300 aa19.98■□□□□ 0.79
SDC4-201ENST00000372733 BRD1O95696 1058 aa19.97■□□□□ 0.79
SDC4-201ENST00000372733 TSPYL4Q9UJ04 414 aa19.97■□□□□ 0.79
SDC4-201ENST00000372733 ZNF500O60304 480 aaPredicted RBP19.97■□□□□ 0.79
SDC4-201ENST00000372733 CCT4P50991 539 aaKnown RBP19.97■□□□□ 0.79
SDC4-201ENST00000372733 OVOS2A0A0J9YW53 1432 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 151.4 ms