RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 TXLNAP40222 546 aa13.57□□□□□ -0.24
PTPRF-203ENST00000372407 TMPOP42166 694 aaKnown RBP13.57□□□□□ -0.24
PTPRF-203ENST00000372407 NOM1Q5C9Z4 860 aaKnown RBP13.57□□□□□ -0.24
PTPRF-203ENST00000372407 SMARCE1Q969G3 411 aa13.57□□□□□ -0.24
PTPRF-203ENST00000372407 ATAD2Q6PL18 1390 aa13.57□□□□□ -0.24
PTPRF-203ENST00000372407 PDIA4P13667 645 aaKnown RBP13.56□□□□□ -0.24
PTPRF-203ENST00000372407 ME1P48163 572 aa13.56□□□□□ -0.24
PTPRF-203ENST00000372407 ZNF530Q6P9A1 599 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-203ENST00000372407 AMOTL2Q9Y2J4 779 aa13.56□□□□□ -0.24
PTPRF-203ENST00000372407 RTEL1-TNFRSF6BF6WH68 1400 aa13.56□□□□□ -0.24
PTPRF-203ENST00000372407 SRGAP3O43295 1099 aa13.56□□□□□ -0.24
PTPRF-203ENST00000372407 EPS15P42566 896 aa13.56□□□□□ -0.24
PTPRF-203ENST00000372407 CAGE1Q8TC20 777 aa13.56□□□□□ -0.24
PTPRF-203ENST00000372407 PATL2C9JE40 543 aaKnown RBP13.56□□□□□ -0.24
PTPRF-203ENST00000372407 TATP17735 454 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-203ENST00000372407 NUTM2BA6NNL0 878 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-203ENST00000372407 NUTM2EB1AL46 878 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-203ENST00000372407 NUTM2AQ8IVF1 878 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-203ENST00000372407 ZSCAN31Q96LW9 406 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-203ENST00000372407 TTLL5Q6EMB2 1281 aa13.55□□□□□ -0.24
PTPRF-203ENST00000372407 TMEM57Q8N5G2 664 aa13.55□□□□□ -0.24
PTPRF-203ENST00000372407 ZMYM3Q14202 1370 aa13.55□□□□□ -0.24
PTPRF-203ENST00000372407 NFE2L2Q16236 605 aa13.55□□□□□ -0.24
PTPRF-203ENST00000372407 RRP12Q5JTH9 1297 aaKnown RBP13.55□□□□□ -0.24
PTPRF-203ENST00000372407 KDM4AO75164 1064 aa13.55□□□□□ -0.24
PTPRF-203ENST00000372407 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.55□□□□□ -0.24
PTPRF-203ENST00000372407 TRIM22Q8IYM9 498 aa13.54□□□□□ -0.24
PTPRF-203ENST00000372407 CCDC66A2RUB6 948 aa13.54□□□□□ -0.24
PTPRF-203ENST00000372407 STK3Q13188 491 aa13.54□□□□□ -0.24
PTPRF-203ENST00000372407 MTMR7Q9Y216 660 aa13.54□□□□□ -0.24
PTPRF-203ENST00000372407 SERPINC1P01008 464 aa13.54□□□□□ -0.24
PTPRF-203ENST00000372407 CCDC112Q8NEF3 446 aa13.54□□□□□ -0.24
PTPRF-203ENST00000372407 SIL1Q9H173 461 aa13.54□□□□□ -0.24
PTPRF-203ENST00000372407 ABCA8O94911 1581 aa13.54□□□□□ -0.24
PTPRF-203ENST00000372407 SLC3A2P08195 630 aaKnown RBP13.54□□□□□ -0.24
PTPRF-203ENST00000372407 KIF6Q6ZMV9 814 aa13.54□□□□□ -0.24
PTPRF-203ENST00000372407 CNNM1Q9NRU3 951 aa13.53□□□□□ -0.24
PTPRF-203ENST00000372407 CWC15Q9P013 229 aaKnown RBP13.53□□□□□ -0.24
PTPRF-203ENST00000372407 BRPF1P55201 1214 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-203ENST00000372407 MPNDQ8N594 471 aa13.53□□□□□ -0.24
PTPRF-203ENST00000372407 IL1RAPL2Q9NP60 686 aa13.53□□□□□ -0.24
PTPRF-203ENST00000372407 CFAP45Q9UL16 551 aa13.53□□□□□ -0.24
PTPRF-203ENST00000372407 ERCC6L2Q5T890 1561 aa13.53□□□□□ -0.24
PTPRF-203ENST00000372407 KRT32Q14532 448 aa13.53□□□□□ -0.24
PTPRF-203ENST00000372407 ODF2Q5BJF6 829 aa13.53□□□□□ -0.24
PTPRF-203ENST00000372407 MAGEC2Q9UBF1 373 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-203ENST00000372407 RBM10P98175 930 aaKnown RBP13.52□□□□□ -0.24
PTPRF-203ENST00000372407 NACAP1Q9BZK3 213 aa13.52□□□□□ -0.24
PTPRF-203ENST00000372407 FAM177BA6PVY3 158 aa13.52□□□□□ -0.24
PTPRF-203ENST00000372407 TTC39AQ5SRH9 613 aa13.52□□□□□ -0.24
PTPRF-203ENST00000372407 JAKMIP1Q96N16 626 aaKnown RBP13.52□□□□□ -0.24
PTPRF-203ENST00000372407 AACSQ86V21 672 aa13.52□□□□□ -0.25
PTPRF-203ENST00000372407 SAMD1Q6SPF0 538 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-203ENST00000372407 PDRG1Q9NUG6 133 aa13.52□□□□□ -0.25
PTPRF-203ENST00000372407 CCDC61Q9Y6R9 512 aa13.52□□□□□ -0.25
PTPRF-203ENST00000372407 RARSP54136 660 aaKnown RBP13.51□□□□□ -0.25
PTPRF-203ENST00000372407 SPATA32Q96LK8 384 aa13.51□□□□□ -0.25
PTPRF-203ENST00000372407 RBM42Q9BTD8 480 aaKnown RBP13.51□□□□□ -0.25
PTPRF-203ENST00000372407 ZNHIT6Q9NWK9 470 aaKnown RBP13.51□□□□□ -0.25
PTPRF-203ENST00000372407 NUP62CLQ9H1M0 184 aa13.51□□□□□ -0.25
PTPRF-203ENST00000372407 CEP57L1Q8IYX8 460 aa13.51□□□□□ -0.25
PTPRF-203ENST00000372407 GNL3LQ9NVN8 582 aaKnown RBP13.51□□□□□ -0.25
PTPRF-203ENST00000372407 CEP126Q9P2H0 1117 aa13.51□□□□□ -0.25
PTPRF-203ENST00000372407 DACH1Q9UI36 760 aa13.51□□□□□ -0.25
PTPRF-203ENST00000372407 CTNNA3Q9UI47 895 aa13.51□□□□□ -0.25
PTPRF-203ENST00000372407 CWC27Q6UX04 472 aaKnown RBP13.51□□□□□ -0.25
PTPRF-203ENST00000372407 SSH1Q8WYL5 1049 aa13.51□□□□□ -0.25
PTPRF-203ENST00000372407 CDK5RAP3Q96JB5 506 aa13.51□□□□□ -0.25
PTPRF-203ENST00000372407 C11orf95C9JLR9 678 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-203ENST00000372407 MAP4K4O95819 1239 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-203ENST00000372407 PPFIBP1Q86W92 1011 aa13.5□□□□□ -0.25
PTPRF-203ENST00000372407 EXOC6BQ9Y2D4 811 aa13.5□□□□□ -0.25
PTPRF-203ENST00000372407 DCTN1Q14203 1278 aa13.5□□□□□ -0.25
PTPRF-203ENST00000372407 RRS1Q15050 365 aaKnown RBP13.5□□□□□ -0.25
PTPRF-203ENST00000372407 H0YHG0 523 aa13.5□□□□□ -0.25
PTPRF-203ENST00000372407 IKQ13123 557 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-203ENST00000372407 WAPLQ7Z5K2 1190 aa13.5□□□□□ -0.25
PTPRF-203ENST00000372407 ZSCAN30Q86W11 494 aa13.5□□□□□ -0.25
PTPRF-203ENST00000372407 CCAR1Q8IX12 1150 aaKnown RBP13.5□□□□□ -0.25
PTPRF-203ENST00000372407 NSD3Q9BZ95 1437 aa13.49□□□□□ -0.25
PTPRF-203ENST00000372407 UHRF1BP1Q6BDS2 1440 aa13.49□□□□□ -0.25
PTPRF-203ENST00000372407 TOM1O60784 492 aa13.49□□□□□ -0.25
PTPRF-203ENST00000372407 CCDC57Q2TAC2 916 aa13.49□□□□□ -0.25
PTPRF-203ENST00000372407 MYO6Q9UM54 1294 aa13.49□□□□□ -0.25
PTPRF-203ENST00000372407 UBAP1LF5GYI3 381 aa13.49□□□□□ -0.25
PTPRF-203ENST00000372407 CABP4P57796 275 aa13.49□□□□□ -0.25
PTPRF-203ENST00000372407 C20orf194Q5TEA3 1177 aa13.49□□□□□ -0.25
PTPRF-203ENST00000372407 ZSCAN25Q6NSZ9 544 aa13.49□□□□□ -0.25
PTPRF-203ENST00000372407 ZFYVE16Q7Z3T8 1539 aa13.49□□□□□ -0.25
PTPRF-203ENST00000372407 ZFYVE27Q5T4F4 411 aa13.49□□□□□ -0.25
PTPRF-203ENST00000372407 CADPS2Q86UW7 1296 aa13.49□□□□□ -0.25
PTPRF-203ENST00000372407 ALDH1L2Q3SY69 923 aa13.48□□□□□ -0.25
PTPRF-203ENST00000372407 FILIP1Q7Z7B0 1213 aa13.48□□□□□ -0.25
PTPRF-203ENST00000372407 ABCC11Q96J66 1382 aa13.48□□□□□ -0.25
PTPRF-203ENST00000372407 ADGRF5Q8IZF2 1346 aa13.48□□□□□ -0.25
PTPRF-203ENST00000372407 CDKL5O76039 1030 aa13.48□□□□□ -0.25
PTPRF-203ENST00000372407 STIM1Q13586 685 aa13.48□□□□□ -0.25
PTPRF-203ENST00000372407 KIF1BPQ96EK5 621 aa13.48□□□□□ -0.25
PTPRF-203ENST00000372407 GLRX3O76003 335 aaKnown RBP13.48□□□□□ -0.25
PTPRF-203ENST00000372407 XPCQ01831 940 aaPredicted RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms