RNA–Protein interactions for RNA: ENST00000370544.9

LMO4-202, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 5,405 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-202ENST00000370544 EMILIN1Q9Y6C2 1016 aa23.31■■□□□ 1.32
LMO4-202ENST00000370544 STARD3NLO95772 234 aa23.31■■□□□ 1.32
LMO4-202ENST00000370544 KRT85P78386 507 aa23.31■■□□□ 1.32
LMO4-202ENST00000370544 ZSCAN31Q96LW9 406 aaPredicted RBP23.31■■□□□ 1.32
LMO4-202ENST00000370544 MAGEC2Q9UBF1 373 aaPredicted RBP23.31■■□□□ 1.32
LMO4-202ENST00000370544 R3HCC1Q9Y3T6 440 aaKnown RBP23.31■■□□□ 1.32
LMO4-202ENST00000370544 SETQ01105 290 aaPredicted RBP23.31■■□□□ 1.32
LMO4-202ENST00000370544 SSH1Q8WYL5 1049 aa23.31■■□□□ 1.32
LMO4-202ENST00000370544 SCAF11Q99590 1463 aaKnown RBP23.31■■□□□ 1.32
LMO4-202ENST00000370544 RUFY1Q96T51 708 aa23.3■■□□□ 1.32
LMO4-202ENST00000370544 URB2Q14146 1524 aaKnown RBP23.3■■□□□ 1.32
LMO4-202ENST00000370544 ME1P48163 572 aa23.3■■□□□ 1.32
LMO4-202ENST00000370544 TAF7Q15545 349 aaPredicted RBP23.3■■□□□ 1.32
LMO4-202ENST00000370544 KRT32Q14532 448 aa23.3■■□□□ 1.32
LMO4-202ENST00000370544 USHBP1Q8N6Y0 703 aa23.3■■□□□ 1.32
LMO4-202ENST00000370544 NOS1P29475 1434 aa23.3■■□□□ 1.32
LMO4-202ENST00000370544 IDI1Q13907 227 aa23.29■■□□□ 1.32
LMO4-202ENST00000370544 PIP4K2AP48426 406 aaPredicted RBP23.29■■□□□ 1.32
LMO4-202ENST00000370544 PIP4K2BP78356 416 aa23.29■■□□□ 1.32
LMO4-202ENST00000370544 AMOTQ4VCS5 1084 aa23.29■■□□□ 1.32
LMO4-202ENST00000370544 KRT18P05783 430 aaKnown RBP23.29■■□□□ 1.32
LMO4-202ENST00000370544 TDO2P48775 406 aa23.29■■□□□ 1.32
LMO4-202ENST00000370544 ODF2Q5BJF6 829 aa23.29■■□□□ 1.32
LMO4-202ENST00000370544 KIF1BPQ96EK5 621 aa23.29■■□□□ 1.32
LMO4-202ENST00000370544 CCDC85AQ96PX6 553 aaPredicted RBP23.29■■□□□ 1.32
LMO4-202ENST00000370544 AMOTL2Q9Y2J4 779 aa23.29■■□□□ 1.32
LMO4-202ENST00000370544 CCAR1Q8IX12 1150 aaKnown RBP23.28■■□□□ 1.32
LMO4-202ENST00000370544 CCDC192P0DO97 292 aa23.28■■□□□ 1.32
LMO4-202ENST00000370544 IGHMBP2P38935 993 aaKnown RBP23.28■■□□□ 1.32
LMO4-202ENST00000370544 SMARCE1Q969G3 411 aa23.28■■□□□ 1.32
LMO4-202ENST00000370544 TNMDQ9H2S6 317 aa23.28■■□□□ 1.32
LMO4-202ENST00000370544 CCDC173Q0VFZ6 552 aa23.28■■□□□ 1.32
LMO4-202ENST00000370544 RAI14Q9P0K7 980 aa23.28■■□□□ 1.32
LMO4-202ENST00000370544 CDKL5O76039 1030 aa23.28■■□□□ 1.32
LMO4-202ENST00000370544 PHF8Q9UPP1 1060 aa23.28■■□□□ 1.32
LMO4-202ENST00000370544 ACBD3Q9H3P7 528 aa23.27■■□□□ 1.32
LMO4-202ENST00000370544 RAB11FIP3O75154 756 aa23.27■■□□□ 1.32
LMO4-202ENST00000370544 FANCAO15360 1455 aa23.27■■□□□ 1.32
LMO4-202ENST00000370544 RPRD2Q5VT52 1461 aaKnown RBP23.27■■□□□ 1.32
LMO4-202ENST00000370544 MX1P20591 662 aa23.27■■□□□ 1.32
LMO4-202ENST00000370544 TTLL5Q6EMB2 1281 aa23.27■■□□□ 1.32
LMO4-202ENST00000370544 CAGE1Q8TC20 777 aa23.27■■□□□ 1.32
LMO4-202ENST00000370544 LARP1Q6PKG0 1096 aaKnown RBP23.26■■□□□ 1.31
LMO4-202ENST00000370544 BICDL1Q6ZP65 573 aa23.26■■□□□ 1.31
LMO4-202ENST00000370544 AK7Q96M32 723 aa23.26■■□□□ 1.31
LMO4-202ENST00000370544 SPINK5Q9NQ38 1064 aaPredicted RBP23.26■■□□□ 1.31
LMO4-202ENST00000370544 TMOD3Q9NYL9 352 aa23.26■■□□□ 1.31
LMO4-202ENST00000370544 BRPF1P55201 1214 aaPredicted RBP23.26■■□□□ 1.31
LMO4-202ENST00000370544 SF3B2Q13435 895 aaKnown RBP23.26■■□□□ 1.31
LMO4-202ENST00000370544 BCL11BQ9C0K0 894 aaPredicted RBP23.26■■□□□ 1.31
LMO4-202ENST00000370544 UBAC1Q9BSL1 405 aa23.25■■□□□ 1.31
LMO4-202ENST00000370544 DENND4BO75064 1496 aaPredicted RBP23.25■■□□□ 1.31
LMO4-202ENST00000370544 DNAJC5BQ9UF47 199 aa23.25■■□□□ 1.31
LMO4-202ENST00000370544 LRP2BPQ9P2M1 347 aa23.25■■□□□ 1.31
LMO4-202ENST00000370544 CIZ1Q9ULV3 898 aaPredicted RBP23.25■■□□□ 1.31
LMO4-202ENST00000370544 SOGA3Q5TF21 947 aa23.24■■□□□ 1.31
LMO4-202ENST00000370544 CCP110O43303 1012 aa23.24■■□□□ 1.31
LMO4-202ENST00000370544 PTCD1O75127 700 aaKnown RBP23.24■■□□□ 1.31
LMO4-202ENST00000370544 IDH1O75874 414 aaKnown RBP23.24■■□□□ 1.31
LMO4-202ENST00000370544 MYD88Q99836 296 aa23.24■■□□□ 1.31
LMO4-202ENST00000370544 PPP1R1BQ9UD71 204 aaPredicted RBP23.24■■□□□ 1.31
LMO4-202ENST00000370544 NOL7Q9UMY1 257 aaKnown RBP23.24■■□□□ 1.31
LMO4-202ENST00000370544 NSD2O96028 1365 aa23.24■■□□□ 1.31
LMO4-202ENST00000370544 SMARCA5O60264 1052 aaPredicted RBP23.24■■□□□ 1.31
LMO4-202ENST00000370544 PPP6R1Q9UPN7 881 aa23.24■■□□□ 1.31
LMO4-202ENST00000370544 RBM5P52756 815 aaKnown RBP eCLIP23.23■■□□□ 1.31
LMO4-202ENST00000370544 C20orf194Q5TEA3 1177 aa23.23■■□□□ 1.31
LMO4-202ENST00000370544 METTL24Q5JXM2 366 aa23.23■■□□□ 1.31
LMO4-202ENST00000370544 SPATA32Q96LK8 384 aa23.23■■□□□ 1.31
LMO4-202ENST00000370544 DACH1Q9UI36 760 aa23.23■■□□□ 1.31
LMO4-202ENST00000370544 GLRX3O76003 335 aaKnown RBP23.23■■□□□ 1.31
LMO4-202ENST00000370544 CASTP20810 708 aaKnown RBP23.23■■□□□ 1.31
LMO4-202ENST00000370544 BIVM-ERCC5R4GMW8 1640 aa23.23■■□□□ 1.31
LMO4-202ENST00000370544 SERPINC1P01008 464 aa23.22■■□□□ 1.31
LMO4-202ENST00000370544 CDR1P51861 262 aa23.22■■□□□ 1.31
LMO4-202ENST00000370544 IMMTQ16891 758 aaKnown RBP23.22■■□□□ 1.31
LMO4-202ENST00000370544 SPC24Q8NBT2 197 aa23.22■■□□□ 1.31
LMO4-202ENST00000370544 CNKSR2Q8WXI2 1034 aa23.22■■□□□ 1.31
LMO4-202ENST00000370544 AIDAQ96BJ3 306 aa23.22■■□□□ 1.31
LMO4-202ENST00000370544 C14orf93Q9H972 538 aaKnown RBP23.22■■□□□ 1.31
LMO4-202ENST00000370544 AKAP2Q9Y2D5 859 aa23.22■■□□□ 1.31
LMO4-202ENST00000370544 ZNF608Q9ULD9 1512 aaPredicted RBP23.22■■□□□ 1.31
LMO4-202ENST00000370544 ZFYVE27Q5T4F4 411 aa23.22■■□□□ 1.31
LMO4-202ENST00000370544 HSP90B2PQ58FF3 399 aa23.21■■□□□ 1.31
LMO4-202ENST00000370544 TMEM132AQ24JP5 1023 aa23.2■■□□□ 1.31
LMO4-202ENST00000370544 MPRIPQ6WCQ1 1025 aa23.2■■□□□ 1.31
LMO4-202ENST00000370544 CFAP45Q9UL16 551 aa23.2■■□□□ 1.31
LMO4-202ENST00000370544 DHX29Q7Z478 1369 aaKnown RBP23.2■■□□□ 1.3
LMO4-202ENST00000370544 DISP3Q9P2K9 1392 aa23.2■■□□□ 1.3
LMO4-202ENST00000370544 HSP90AB2PQ58FF8 381 aa23.19■■□□□ 1.3
LMO4-202ENST00000370544 THOC2Q8NI27 1593 aaKnown RBP23.19■■□□□ 1.3
LMO4-202ENST00000370544 FOXO3O43524 673 aa23.19■■□□□ 1.3
LMO4-202ENST00000370544 STIM1Q13586 685 aa23.19■■□□□ 1.3
LMO4-202ENST00000370544 ZNF652Q9Y2D9 606 aa23.19■■□□□ 1.3
LMO4-202ENST00000370544 F6X3S4 739 aa23.19■■□□□ 1.3
LMO4-202ENST00000370544 CEBPAP49715 358 aaPredicted RBP23.19■■□□□ 1.3
LMO4-202ENST00000370544 TTC21BQ7Z4L5 1316 aa23.18■■□□□ 1.3
LMO4-202ENST00000370544 DNAAF4Q8WXU2 420 aa23.18■■□□□ 1.3
LMO4-202ENST00000370544 LRPPRCP42704 1394 aaKnown RBP23.17■■□□□ 1.3
LMO4-202ENST00000370544 WASF1Q92558 559 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms