RNA–Protein interactions for RNA: ENST00000351288.10

SMPD4-201, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2 BASIC

Gene SMPD4, Length 3,661 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-201ENST00000351288 ANTXR1Q9H6X2 564 aa12.91□□□□□ -0.34
SMPD4-201ENST00000351288 FOXD4L5Q5VV16 416 aaPredicted RBP12.91□□□□□ -0.34
SMPD4-201ENST00000351288 TSHZ3Q63HK5 1081 aa12.91□□□□□ -0.34
SMPD4-201ENST00000351288 HSCBQ8IWL3 235 aa12.91□□□□□ -0.34
SMPD4-201ENST00000351288 FOXD4L4Q8WXT5 416 aaPredicted RBP12.91□□□□□ -0.34
SMPD4-201ENST00000351288 ADGRB2O60241 1585 aa12.9□□□□□ -0.34
SMPD4-201ENST00000351288 SETD1BQ9UPS6 1966 aaKnown RBP12.9□□□□□ -0.34
SMPD4-201ENST00000351288 IL16Q14005 1332 aa12.9□□□□□ -0.34
SMPD4-201ENST00000351288 NCLP19338 710 aaKnown RBP12.9□□□□□ -0.34
SMPD4-201ENST00000351288 GAS2L2Q8NHY3 880 aa12.9□□□□□ -0.34
SMPD4-201ENST00000351288 CFAP44Q96MT7 982 aa12.9□□□□□ -0.34
SMPD4-201ENST00000351288 FAM135BQ49AJ0 1406 aa12.9□□□□□ -0.34
SMPD4-201ENST00000351288 RAPGEF4Q8WZA2 1011 aa12.9□□□□□ -0.35
SMPD4-201ENST00000351288 EXOC6BQ9Y2D4 811 aa12.9□□□□□ -0.35
SMPD4-201ENST00000351288 ALDH1L2Q3SY69 923 aa12.89□□□□□ -0.35
SMPD4-201ENST00000351288 USP32Q8NFA0 1604 aa12.89□□□□□ -0.35
SMPD4-201ENST00000351288 IFT57Q9NWB7 429 aa12.89□□□□□ -0.35
SMPD4-201ENST00000351288 G2E3Q7L622 706 aa12.88□□□□□ -0.35
SMPD4-201ENST00000351288 PIP4K2AP48426 406 aaPredicted RBP12.88□□□□□ -0.35
SMPD4-201ENST00000351288 TBC1D9Q6ZT07 1266 aa12.88□□□□□ -0.35
SMPD4-201ENST00000351288 SYTL4Q96C24 671 aaPredicted RBP12.88□□□□□ -0.35
SMPD4-201ENST00000351288 MEIS3Q99687 375 aa12.88□□□□□ -0.35
SMPD4-201ENST00000351288 TBX22Q9Y458 520 aa12.88□□□□□ -0.35
SMPD4-201ENST00000351288 AAMPQ13685 434 aa12.87□□□□□ -0.35
SMPD4-201ENST00000351288 GNAT3A8MTJ3 354 aa12.87□□□□□ -0.35
SMPD4-201ENST00000351288 MYL6BP14649 208 aa12.87□□□□□ -0.35
SMPD4-201ENST00000351288 FOXD4L6Q3SYB3 417 aaPredicted RBP12.87□□□□□ -0.35
SMPD4-201ENST00000351288 FOXD4L3Q6VB84 417 aaPredicted RBP12.87□□□□□ -0.35
SMPD4-201ENST00000351288 CASC1Q6TDU7 716 aa12.87□□□□□ -0.35
SMPD4-201ENST00000351288 IL1RAPL2Q9NP60 686 aa12.87□□□□□ -0.35
SMPD4-201ENST00000351288 HMMRO75330 724 aa12.86□□□□□ -0.35
SMPD4-201ENST00000351288 EVA1CP58658 441 aa12.86□□□□□ -0.35
SMPD4-201ENST00000351288 DDX54Q8TDD1 881 aaKnown RBP12.86□□□□□ -0.35
SMPD4-201ENST00000351288 C9orf78Q9NZ63 289 aaPredicted RBP12.86□□□□□ -0.35
SMPD4-201ENST00000351288 MAP4K4O95819 1239 aaPredicted RBP12.86□□□□□ -0.35
SMPD4-201ENST00000351288 KRT28Q7Z3Y7 464 aa12.86□□□□□ -0.35
SMPD4-201ENST00000351288 PANK2Q9BZ23 570 aa12.85□□□□□ -0.35
SMPD4-201ENST00000351288 EDC4Q6P2E9 1401 aaKnown RBP12.85□□□□□ -0.35
SMPD4-201ENST00000351288 ZNF853P0CG23 659 aa12.85□□□□□ -0.35
SMPD4-201ENST00000351288 GSPT1P15170 499 aaKnown RBP12.84□□□□□ -0.35
SMPD4-201ENST00000351288 JARID2Q92833 1246 aaPredicted RBP12.84□□□□□ -0.35
SMPD4-201ENST00000351288 MCM4P33991 863 aa12.84□□□□□ -0.35
SMPD4-201ENST00000351288 KCNJ4P48050 445 aa12.84□□□□□ -0.35
SMPD4-201ENST00000351288 SLC39A6Q13433 755 aa12.84□□□□□ -0.35
SMPD4-201ENST00000351288 CCDC30Q5VVM6 783 aa12.84□□□□□ -0.35
SMPD4-201ENST00000351288 BTBD11A6QL63 1104 aa12.83□□□□□ -0.36
SMPD4-201ENST00000351288 SURF6O75683 361 aaKnown RBP12.83□□□□□ -0.36
SMPD4-201ENST00000351288 UBTFL1P0CB47 393 aaPredicted RBP12.83□□□□□ -0.36
SMPD4-201ENST00000351288 CPSF1Q10570 1443 aaKnown RBP12.83□□□□□ -0.36
SMPD4-201ENST00000351288 MED14O60244 1454 aa12.82□□□□□ -0.36
SMPD4-201ENST00000351288 PLEKHO1Q53GL0 409 aaPredicted RBP12.82□□□□□ -0.36
SMPD4-201ENST00000351288 CHAMP1Q96JM3 812 aa12.82□□□□□ -0.36
SMPD4-201ENST00000351288 KIF20BQ96Q89 1820 aa12.82□□□□□ -0.36
SMPD4-201ENST00000351288 VIRMAQ69YN4 1812 aaKnown RBP12.82□□□□□ -0.36
SMPD4-201ENST00000351288 EIF5BO60841 1220 aaKnown RBP12.82□□□□□ -0.36
SMPD4-201ENST00000351288 HOXC9P31274 260 aa12.82□□□□□ -0.36
SMPD4-201ENST00000351288 TTC5Q8N0Z6 440 aa12.82□□□□□ -0.36
SMPD4-201ENST00000351288 LGR6Q9HBX8 967 aa12.82□□□□□ -0.36
SMPD4-201ENST00000351288 PRDM11Q9NQV5 511 aa12.82□□□□□ -0.36
SMPD4-201ENST00000351288 CHMP5Q9NZZ3 219 aa12.82□□□□□ -0.36
SMPD4-201ENST00000351288 ABCC4O15439 1325 aa12.81□□□□□ -0.36
SMPD4-201ENST00000351288 PTCD1O75127 700 aaKnown RBP12.81□□□□□ -0.36
SMPD4-201ENST00000351288 SIL1Q9H173 461 aa12.81□□□□□ -0.36
SMPD4-201ENST00000351288 MSH6P52701 1360 aa12.81□□□□□ -0.36
SMPD4-201ENST00000351288 TRAK2O60296 914 aa12.81□□□□□ -0.36
SMPD4-201ENST00000351288 GCP02774 474 aa12.81□□□□□ -0.36
SMPD4-201ENST00000351288 BMP2KLQ5H9B9 411 aa12.81□□□□□ -0.36
SMPD4-201ENST00000351288 TOM1L2Q6ZVM7 507 aa12.81□□□□□ -0.36
SMPD4-201ENST00000351288 PLEKHM2Q8IWE5 1019 aa12.81□□□□□ -0.36
SMPD4-201ENST00000351288 ATP7BP35670 1465 aa12.81□□□□□ -0.36
SMPD4-201ENST00000351288 ANKRD24Q8TF21 1146 aa12.81□□□□□ -0.36
SMPD4-201ENST00000351288 GCC1Q96CN9 775 aa12.81□□□□□ -0.36
SMPD4-201ENST00000351288 KIF2CQ99661 725 aa12.81□□□□□ -0.36
SMPD4-201ENST00000351288 DTNBO60941 627 aa12.8□□□□□ -0.36
SMPD4-201ENST00000351288 RIC3Q7Z5B4 369 aa12.8□□□□□ -0.36
SMPD4-201ENST00000351288 PLEKHG3A1L390 1219 aa12.8□□□□□ -0.36
SMPD4-201ENST00000351288 FLIIQ13045 1269 aa12.8□□□□□ -0.36
SMPD4-201ENST00000351288 TAF7Q15545 349 aaPredicted RBP12.8□□□□□ -0.36
SMPD4-201ENST00000351288 NBPF6Q5VWK0 638 aa12.8□□□□□ -0.36
SMPD4-201ENST00000351288 NBPF4Q96M43 638 aa12.8□□□□□ -0.36
SMPD4-201ENST00000351288 DIP2BQ9P265 1576 aa12.8□□□□□ -0.36
SMPD4-201ENST00000351288 PHAXQ9H814 394 aaKnown RBP12.8□□□□□ -0.36
SMPD4-201ENST00000351288 ANO2Q9NQ90 1003 aa12.8□□□□□ -0.36
SMPD4-201ENST00000351288 TNPO1Q92973 898 aaKnown RBP12.79□□□□□ -0.36
SMPD4-201ENST00000351288 NCBP3Q53F19 620 aaKnown RBP12.79□□□□□ -0.36
SMPD4-201ENST00000351288 AK9Q5TCS8 1911 aa12.79□□□□□ -0.36
SMPD4-201ENST00000351288 DLG5Q8TDM6 1919 aa12.79□□□□□ -0.36
SMPD4-201ENST00000351288 KCNQ3O43525 872 aa12.78□□□□□ -0.36
SMPD4-201ENST00000351288 NUTM1Q86Y26 1132 aa12.78□□□□□ -0.36
SMPD4-201ENST00000351288 NAP1L2Q9ULW6 460 aaPredicted RBP12.78□□□□□ -0.36
SMPD4-201ENST00000351288 LRRFIP2Q9Y608 721 aaKnown RBP12.78□□□□□ -0.36
SMPD4-201ENST00000351288 CHL1O00533 1208 aa12.78□□□□□ -0.36
SMPD4-201ENST00000351288 GNAI2P04899 355 aa12.78□□□□□ -0.36
SMPD4-201ENST00000351288 SSFA2P28290 1259 aa12.78□□□□□ -0.36
SMPD4-201ENST00000351288 CEP85Q6P2H3 762 aa12.78□□□□□ -0.36
SMPD4-201ENST00000351288 CCDC85AQ96PX6 553 aaPredicted RBP12.78□□□□□ -0.36
SMPD4-201ENST00000351288 FLT4P35916 1363 aa12.78□□□□□ -0.36
SMPD4-201ENST00000351288 ARHGAP45Q92619 1136 aa12.77□□□□□ -0.36
SMPD4-201ENST00000351288 PI4KAP2A4QPH2 592 aa12.77□□□□□ -0.37
SMPD4-201ENST00000351288 FAM177BA6PVY3 158 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms