RNA–Protein interactions for RNA: ENST00000336904.7

SNCA-201, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 3,041 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-201ENST00000336904 TSHZ3Q63HK5 1081 aa11.13□□□□□ -0.63
SNCA-201ENST00000336904 TBC1D32Q96NH3 1257 aa11.13□□□□□ -0.63
SNCA-201ENST00000336904 TBC1D2Q9BYX2 928 aa11.13□□□□□ -0.63
SNCA-201ENST00000336904 MSH6P52701 1360 aa11.12□□□□□ -0.63
SNCA-201ENST00000336904 C22orf23Q9BZE7 217 aa11.12□□□□□ -0.63
SNCA-201ENST00000336904 RTN4Q9NQC3 1192 aaKnown RBP11.12□□□□□ -0.63
SNCA-201ENST00000336904 CHL1O00533 1208 aa11.11□□□□□ -0.63
SNCA-201ENST00000336904 ANXA1P04083 346 aa11.11□□□□□ -0.63
SNCA-201ENST00000336904 HOXC9P31274 260 aa11.11□□□□□ -0.63
SNCA-201ENST00000336904 NCBP3Q53F19 620 aaKnown RBP11.11□□□□□ -0.63
SNCA-201ENST00000336904 ABCC4O15439 1325 aa11.11□□□□□ -0.63
SNCA-201ENST00000336904 NRKQ7Z2Y5 1582 aa11.11□□□□□ -0.63
SNCA-201ENST00000336904 RBM42Q9BTD8 480 aaKnown RBP11.11□□□□□ -0.63
SNCA-201ENST00000336904 EIF2S2P20042 333 aaKnown RBP11.1□□□□□ -0.63
SNCA-201ENST00000336904 PSME1Q06323 249 aa11.1□□□□□ -0.63
SNCA-201ENST00000336904 PHF8Q9UPP1 1060 aa11.1□□□□□ -0.63
SNCA-201ENST00000336904 FLT4P35916 1363 aa11.1□□□□□ -0.63
SNCA-201ENST00000336904 VIRMAQ69YN4 1812 aaKnown RBP11.1□□□□□ -0.63
SNCA-201ENST00000336904 TOPAZ1Q8N9V7 1692 aa11.09□□□□□ -0.63
SNCA-201ENST00000336904 SSH2Q76I76 1423 aa11.09□□□□□ -0.63
SNCA-201ENST00000336904 AAMPQ13685 434 aa11.09□□□□□ -0.63
SNCA-201ENST00000336904 API5Q9BZZ5 524 aaKnown RBP11.09□□□□□ -0.63
SNCA-201ENST00000336904 PIK3C2AO00443 1686 aa11.08□□□□□ -0.63
SNCA-201ENST00000336904 PTCH1Q13635 1447 aa11.08□□□□□ -0.64
SNCA-201ENST00000336904 KCNQ3O43525 872 aa11.08□□□□□ -0.64
SNCA-201ENST00000336904 ANKLE2Q86XL3 938 aa11.08□□□□□ -0.64
SNCA-201ENST00000336904 IL17REQ8NFR9 667 aa11.08□□□□□ -0.64
SNCA-201ENST00000336904 LGR6Q9HBX8 967 aa11.08□□□□□ -0.64
SNCA-201ENST00000336904 SBNO1A3KN83 1393 aa11.08□□□□□ -0.64
SNCA-201ENST00000336904 FKBP5Q13451 457 aaPredicted RBP11.08□□□□□ -0.64
SNCA-201ENST00000336904 NBPF6Q5VWK0 638 aa11.08□□□□□ -0.64
SNCA-201ENST00000336904 NBPF4Q96M43 638 aa11.08□□□□□ -0.64
SNCA-201ENST00000336904 USP31Q70CQ4 1352 aa11.08□□□□□ -0.64
SNCA-201ENST00000336904 BECN1Q14457 450 aa11.07□□□□□ -0.64
SNCA-201ENST00000336904 EXOC6BQ9Y2D4 811 aa11.07□□□□□ -0.64
SNCA-201ENST00000336904 TTC21AQ8NDW8 1320 aa11.07□□□□□ -0.64
SNCA-201ENST00000336904 PIK3R4Q99570 1358 aa11.07□□□□□ -0.64
SNCA-201ENST00000336904 CRB1P82279 1406 aa11.07□□□□□ -0.64
SNCA-201ENST00000336904 ARHGAP23Q9P227 1491 aa11.07□□□□□ -0.64
SNCA-201ENST00000336904 GSPT1P15170 499 aaKnown RBP11.07□□□□□ -0.64
SNCA-201ENST00000336904 IL27Q8NEV9 243 aa11.07□□□□□ -0.64
SNCA-201ENST00000336904 SLIT1O75093 1534 aa11.07□□□□□ -0.64
SNCA-201ENST00000336904 RGS12O14924 1447 aa11.06□□□□□ -0.64
SNCA-201ENST00000336904 CD2BP2O95400 341 aaKnown RBP11.06□□□□□ -0.64
SNCA-201ENST00000336904 MPRIPQ6WCQ1 1025 aa11.06□□□□□ -0.64
SNCA-201ENST00000336904 TBC1D9Q6ZT07 1266 aa11.06□□□□□ -0.64
SNCA-201ENST00000336904 PHAXQ9H814 394 aaKnown RBP11.06□□□□□ -0.64
SNCA-201ENST00000336904 IGSF1Q8N6C5 1336 aa11.06□□□□□ -0.64
SNCA-201ENST00000336904 ZC3H6P61129 1189 aaKnown RBP11.06□□□□□ -0.64
SNCA-201ENST00000336904 ARHGAP45Q92619 1136 aa11.06□□□□□ -0.64
SNCA-201ENST00000336904 GNAT3A8MTJ3 354 aa11.06□□□□□ -0.64
SNCA-201ENST00000336904 CEP85Q6P2H3 762 aa11.06□□□□□ -0.64
SNCA-201ENST00000336904 GZF1Q9H116 711 aaPredicted RBP11.06□□□□□ -0.64
SNCA-201ENST00000336904 PRAMEF22A3QJZ6 481 aa11.04□□□□□ -0.64
SNCA-201ENST00000336904 BRPF1P55201 1214 aaPredicted RBP11.04□□□□□ -0.64
SNCA-201ENST00000336904 CABLES1Q8TDN4 633 aa11.04□□□□□ -0.64
SNCA-201ENST00000336904 ARHGEF10O15013 1369 aa11.04□□□□□ -0.64
SNCA-201ENST00000336904 BRPF3Q9ULD4 1205 aa11.04□□□□□ -0.64
SNCA-201ENST00000336904 PLEKHM2Q8IWE5 1019 aa11.03□□□□□ -0.64
SNCA-201ENST00000336904 GAS2L2Q8NHY3 880 aa11.03□□□□□ -0.64
SNCA-201ENST00000336904 GCC1Q96CN9 775 aa11.03□□□□□ -0.64
SNCA-201ENST00000336904 STK31Q9BXU1 1019 aa11.03□□□□□ -0.64
SNCA-201ENST00000336904 FLIIQ13045 1269 aa11.03□□□□□ -0.64
SNCA-201ENST00000336904 INTS3Q68E01 1043 aaKnown RBP11.03□□□□□ -0.64
SNCA-201ENST00000336904 RTL1A6NKG5 1358 aa11.03□□□□□ -0.64
SNCA-201ENST00000336904 NALCNQ8IZF0 1738 aa11.03□□□□□ -0.64
SNCA-201ENST00000336904 FMN2Q9NZ56 1722 aa11.03□□□□□ -0.64
SNCA-201ENST00000336904 PNMA6EA0A0J9YXQ4 647 aa11.03□□□□□ -0.64
SNCA-201ENST00000336904 AXIN2Q9Y2T1 843 aa11.03□□□□□ -0.64
SNCA-201ENST00000336904 GSE1Q14687 1217 aa11.02□□□□□ -0.65
SNCA-201ENST00000336904 ATP10DQ9P241 1426 aa11.02□□□□□ -0.65
SNCA-201ENST00000336904 PROSER2Q86WR7 435 aaPredicted RBP11.02□□□□□ -0.65
SNCA-201ENST00000336904 ANKRD44Q8N8A2 993 aa11.02□□□□□ -0.65
SNCA-201ENST00000336904 ANTXR1Q9H6X2 564 aa11.02□□□□□ -0.65
SNCA-201ENST00000336904 RGPD1P0DJD0 1748 aa11.02□□□□□ -0.65
SNCA-201ENST00000336904 MAP4K4O95819 1239 aaPredicted RBP11.01□□□□□ -0.65
SNCA-201ENST00000336904 PIP4K2AP48426 406 aaPredicted RBP11.01□□□□□ -0.65
SNCA-201ENST00000336904 HSPA2P54652 639 aa11.01□□□□□ -0.65
SNCA-201ENST00000336904 BMP2KLQ5H9B9 411 aa11.01□□□□□ -0.65
SNCA-201ENST00000336904 HDGFL1Q5TGJ6 251 aa11.01□□□□□ -0.65
SNCA-201ENST00000336904 IL1RAPL2Q9NP60 686 aa11.01□□□□□ -0.65
SNCA-201ENST00000336904 ZNF530Q6P9A1 599 aaPredicted RBP11.01□□□□□ -0.65
SNCA-201ENST00000336904 DCTPP1Q9H773 170 aa11.01□□□□□ -0.65
SNCA-201ENST00000336904 LRRFIP2Q9Y608 721 aaKnown RBP11.01□□□□□ -0.65
SNCA-201ENST00000336904 XRN1Q8IZH2 1706 aaKnown RBP11.01□□□□□ -0.65
SNCA-201ENST00000336904 KDRP35968 1356 aa11.01□□□□□ -0.65
SNCA-201ENST00000336904 HSCBQ8IWL3 235 aa11.01□□□□□ -0.65
SNCA-201ENST00000336904 MAP3K5Q99683 1374 aa11□□□□□ -0.65
SNCA-201ENST00000336904 CHPF2Q9P2E5 772 aa11□□□□□ -0.65
SNCA-201ENST00000336904 USP35Q9P2H5 1018 aa11□□□□□ -0.65
SNCA-201ENST00000336904 GCP02774 474 aa11□□□□□ -0.65
SNCA-201ENST00000336904 HSP90AA1P07900 732 aaKnown RBP11□□□□□ -0.65
SNCA-201ENST00000336904 CHRNA2Q15822 529 aa11□□□□□ -0.65
SNCA-201ENST00000336904 RGPD2P0DJD1 1756 aa10.99□□□□□ -0.65
SNCA-201ENST00000336904 HSP90AB1P08238 724 aaKnown RBP10.99□□□□□ -0.65
SNCA-201ENST00000336904 SDSP20132 328 aa10.99□□□□□ -0.65
SNCA-201ENST00000336904 TAF7Q15545 349 aaPredicted RBP10.99□□□□□ -0.65
SNCA-201ENST00000336904 NOL8Q76FK4 1167 aaKnown RBP10.99□□□□□ -0.65
SNCA-201ENST00000336904 KIF2CQ99661 725 aa10.99□□□□□ -0.65
SNCA-201ENST00000336904 KIAA0232Q92628 1395 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms