RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 SLC26A8Q96RN1 970 aa14.84□□□□□ -0.03
SDC3-201ENST00000336798 EIF5P55010 431 aaKnown RBP14.84□□□□□ -0.03
SDC3-201ENST00000336798 FILIP1Q7Z7B0 1213 aa14.84□□□□□ -0.03
SDC3-201ENST00000336798 KIAA1328Q86T90 577 aa14.84□□□□□ -0.03
SDC3-201ENST00000336798 UBA5Q9GZZ9 404 aa14.84□□□□□ -0.03
SDC3-201ENST00000336798 PRDM11Q9NQV5 511 aa14.84□□□□□ -0.03
SDC3-201ENST00000336798 MINDY4BA8MYZ0 360 aa14.84□□□□□ -0.03
SDC3-201ENST00000336798 DNA2P51530 1060 aa14.84□□□□□ -0.03
SDC3-201ENST00000336798 BLOC1S2Q6QNY1 142 aa14.84□□□□□ -0.03
SDC3-201ENST00000336798 ZSCAN25Q6NSZ9 544 aa14.84□□□□□ -0.03
SDC3-201ENST00000336798 MCM2P49736 904 aa14.83□□□□□ -0.03
SDC3-201ENST00000336798 CCT4P50991 539 aaKnown RBP14.83□□□□□ -0.03
SDC3-201ENST00000336798 KRT85P78386 507 aa14.83□□□□□ -0.03
SDC3-201ENST00000336798 ANKRD1Q15327 319 aa14.83□□□□□ -0.03
SDC3-201ENST00000336798 TMX1Q9H3N1 280 aa14.83□□□□□ -0.04
SDC3-201ENST00000336798 NBPF1Q3BBV0 1214 aa14.83□□□□□ -0.04
SDC3-201ENST00000336798 CCDC82Q8N4S0 544 aa14.83□□□□□ -0.04
SDC3-201ENST00000336798 ARHGAP5Q13017 1502 aa14.83□□□□□ -0.04
SDC3-201ENST00000336798 PTCD1O75127 700 aaKnown RBP14.83□□□□□ -0.04
SDC3-201ENST00000336798 TTLL12Q14166 644 aaPredicted RBP14.83□□□□□ -0.04
SDC3-201ENST00000336798 IGHMBP2P38935 993 aaKnown RBP14.82□□□□□ -0.04
SDC3-201ENST00000336798 SLC4A8Q2Y0W8 1093 aa14.82□□□□□ -0.04
SDC3-201ENST00000336798 CCDC112Q8NEF3 446 aa14.82□□□□□ -0.04
SDC3-201ENST00000336798 AIDAQ96BJ3 306 aa14.82□□□□□ -0.04
SDC3-201ENST00000336798 PSMD1Q99460 953 aa14.82□□□□□ -0.04
SDC3-201ENST00000336798 CCDC113Q9H0I3 377 aa14.82□□□□□ -0.04
SDC3-201ENST00000336798 CCDC102AQ96A19 550 aa14.82□□□□□ -0.04
SDC3-201ENST00000336798 CEP126Q9P2H0 1117 aa14.82□□□□□ -0.04
SDC3-201ENST00000336798 POLR3DP05423 398 aaPredicted RBP14.82□□□□□ -0.04
SDC3-201ENST00000336798 ERICH4A6NGS2 130 aa14.81□□□□□ -0.04
SDC3-201ENST00000336798 SPDYE4A6NLX3 237 aa14.81□□□□□ -0.04
SDC3-201ENST00000336798 UQCRHLA0A096LP55 91 aa14.81□□□□□ -0.04
SDC3-201ENST00000336798 K7ELQ4 463 aaPredicted RBP14.81□□□□□ -0.04
SDC3-201ENST00000336798 UQCRHP07919 91 aa14.81□□□□□ -0.04
SDC3-201ENST00000336798 CRACR2BQ8N4Y2 399 aaPredicted RBP14.81□□□□□ -0.04
SDC3-201ENST00000336798 CASTP20810 708 aaKnown RBP14.81□□□□□ -0.04
SDC3-201ENST00000336798 TTC16Q8NEE8 873 aa14.81□□□□□ -0.04
SDC3-201ENST00000336798 TNNT1P13805 278 aa14.81□□□□□ -0.04
SDC3-201ENST00000336798 METTL24Q5JXM2 366 aa14.81□□□□□ -0.04
SDC3-201ENST00000336798 MYOM3Q5VTT5 1437 aa14.81□□□□□ -0.04
SDC3-201ENST00000336798 EZRP15311 586 aaKnown RBP14.81□□□□□ -0.04
SDC3-201ENST00000336798 WDR33Q9C0J8 1336 aaKnown RBP14.81□□□□□ -0.04
SDC3-201ENST00000336798 KLHL10Q6JEL2 608 aa14.8□□□□□ -0.04
SDC3-201ENST00000336798 UPF3BQ9BZI7 483 aaKnown RBP14.8□□□□□ -0.04
SDC3-201ENST00000336798 ANKIB1Q9P2G1 1089 aa14.8□□□□□ -0.04
SDC3-201ENST00000336798 DESP17661 470 aa14.8□□□□□ -0.04
SDC3-201ENST00000336798 GUCY1B3Q02153 619 aa14.8□□□□□ -0.04
SDC3-201ENST00000336798 FERMT3Q86UX7 667 aa14.8□□□□□ -0.04
SDC3-201ENST00000336798 CBFA2T2O43439 604 aa14.8□□□□□ -0.04
SDC3-201ENST00000336798 SMARCA5O60264 1052 aaPredicted RBP14.8□□□□□ -0.04
SDC3-201ENST00000336798 TAF4BQ92750 862 aa14.79□□□□□ -0.04
SDC3-201ENST00000336798 TMOD2Q9NZR1 351 aa14.79□□□□□ -0.04
SDC3-201ENST00000336798 FANCD2Q9BXW9 1451 aa14.79□□□□□ -0.04
SDC3-201ENST00000336798 CDKL5O76039 1030 aa14.79□□□□□ -0.04
SDC3-201ENST00000336798 CHD1LQ86WJ1 897 aa14.79□□□□□ -0.04
SDC3-201ENST00000336798 USHBP1Q8N6Y0 703 aa14.79□□□□□ -0.04
SDC3-201ENST00000336798 EPB41L2O43491 1005 aaKnown RBP14.78□□□□□ -0.04
SDC3-201ENST00000336798 ANAPC15P60006 121 aa14.78□□□□□ -0.04
SDC3-201ENST00000336798 GPATCH11Q8N954 259 aa14.78□□□□□ -0.04
SDC3-201ENST00000336798 ZNF526Q8TF50 670 aaPredicted RBP14.78□□□□□ -0.04
SDC3-201ENST00000336798 NUP62CLQ9H1M0 184 aa14.78□□□□□ -0.04
SDC3-201ENST00000336798 EXOC6BQ9Y2D4 811 aa14.78□□□□□ -0.04
SDC3-201ENST00000336798 MKNK2Q9HBH9 465 aa14.78□□□□□ -0.04
SDC3-201ENST00000336798 SEC63Q9UGP8 760 aaKnown RBP14.78□□□□□ -0.04
SDC3-201ENST00000336798 CFAP100Q494V2 611 aa14.78□□□□□ -0.04
SDC3-201ENST00000336798 IMMTQ16891 758 aaKnown RBP14.77□□□□□ -0.04
SDC3-201ENST00000336798 JAKMIP3Q5VZ66 844 aa14.77□□□□□ -0.04
SDC3-201ENST00000336798 GOPCQ9HD26 462 aa14.77□□□□□ -0.04
SDC3-201ENST00000336798 AKNAQ7Z591 1439 aa14.77□□□□□ -0.04
SDC3-201ENST00000336798 CTNNBL1Q8WYA6 563 aaPredicted RBP14.77□□□□□ -0.04
SDC3-201ENST00000336798 GOLGA6L7A0A1B0GV03 622 aa14.77□□□□□ -0.05
SDC3-201ENST00000336798 MACROD2A1Z1Q3 448 aa14.77□□□□□ -0.05
SDC3-201ENST00000336798 CCDC96Q2M329 555 aa14.77□□□□□ -0.05
SDC3-201ENST00000336798 CCDC83Q8IWF9 413 aa14.77□□□□□ -0.05
SDC3-201ENST00000336798 ADAMTS2O95450 1211 aa14.77□□□□□ -0.05
SDC3-201ENST00000336798 RBM25P49756 843 aaKnown RBP14.77□□□□□ -0.05
SDC3-201ENST00000336798 AAMPQ13685 434 aa14.77□□□□□ -0.05
SDC3-201ENST00000336798 PNISRQ8TF01 805 aaKnown RBP14.77□□□□□ -0.05
SDC3-201ENST00000336798 ANKRD50Q9ULJ7 1429 aa14.76□□□□□ -0.05
SDC3-201ENST00000336798 LARP6Q9BRS8 491 aaKnown RBP14.76□□□□□ -0.05
SDC3-201ENST00000336798 BRD4O60885 1362 aaPredicted RBP14.76□□□□□ -0.05
SDC3-201ENST00000336798 ERLIN1O75477 346 aa14.76□□□□□ -0.05
SDC3-201ENST00000336798 THUMPD2Q9BTF0 503 aaKnown RBP14.76□□□□□ -0.05
SDC3-201ENST00000336798 MYD88Q99836 296 aa14.76□□□□□ -0.05
SDC3-201ENST00000336798 CGNQ9P2M7 1197 aaKnown RBP14.76□□□□□ -0.05
SDC3-201ENST00000336798 GOLGA6L10A0A0M3HER8 536 aa14.76□□□□□ -0.05
SDC3-201ENST00000336798 ZPR1O75312 459 aa14.76□□□□□ -0.05
SDC3-201ENST00000336798 MCM10Q7L590 875 aa14.76□□□□□ -0.05
SDC3-201ENST00000336798 TXLNBQ8N3L3 684 aa14.76□□□□□ -0.05
SDC3-201ENST00000336798 CTNNA3Q9UI47 895 aa14.76□□□□□ -0.05
SDC3-201ENST00000336798 BOLA2Q9H3K6 86 aa14.75□□□□□ -0.05
SDC3-201ENST00000336798 WDR70Q9NW82 654 aa14.75□□□□□ -0.05
SDC3-201ENST00000336798 CCDC178Q5BJE1 867 aa14.75□□□□□ -0.05
SDC3-201ENST00000336798 PLCD3Q8N3E9 789 aa14.75□□□□□ -0.05
SDC3-201ENST00000336798 TOP2AP11388 1531 aaKnown RBP14.75□□□□□ -0.05
SDC3-201ENST00000336798 TMEM87AQ8NBN3 555 aa14.75□□□□□ -0.05
SDC3-201ENST00000336798 ARHGAP29Q52LW3 1261 aa14.75□□□□□ -0.05
SDC3-201ENST00000336798 GRPEL1Q9HAV7 217 aa14.75□□□□□ -0.05
SDC3-201ENST00000336798 C11orf95C9JLR9 678 aaPredicted RBP14.75□□□□□ -0.05
SDC3-201ENST00000336798 RANBP6O60518 1105 aaKnown RBP14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms