RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 CD2BP2O95400 341 aaKnown RBP18.06■□□□□ 0.48
PTPN9-201ENST00000306726 MRE11P49959 708 aa18.06■□□□□ 0.48
PTPN9-201ENST00000306726 KRT24Q2M2I5 525 aa18.06■□□□□ 0.48
PTPN9-201ENST00000306726 RBM27Q9P2N5 1060 aaKnown RBP18.06■□□□□ 0.48
PTPN9-201ENST00000306726 CHMP3Q9Y3E7 222 aa18.06■□□□□ 0.48
PTPN9-201ENST00000306726 DDX11L8A8MPP1 907 aa18.06■□□□□ 0.48
PTPN9-201ENST00000306726 GAS2L3Q86XJ1 694 aa18.06■□□□□ 0.48
PTPN9-201ENST00000306726 PPIP5K1Q6PFW1 1433 aa18.06■□□□□ 0.48
PTPN9-201ENST00000306726 PLEKHG3A1L390 1219 aa18.06■□□□□ 0.48
PTPN9-201ENST00000306726 TSPYL6Q8N831 410 aa18.06■□□□□ 0.48
PTPN9-201ENST00000306726 RRS1Q15050 365 aaKnown RBP18.05■□□□□ 0.48
PTPN9-201ENST00000306726 CABP1Q9NZU7 370 aa18.05■□□□□ 0.48
PTPN9-201ENST00000306726 TRIM6-TRIM34B2RNG4 842 aa18.05■□□□□ 0.48
PTPN9-201ENST00000306726 NASPP49321 788 aaPredicted RBP18.05■□□□□ 0.48
PTPN9-201ENST00000306726 CHD1LQ86WJ1 897 aa18.05■□□□□ 0.48
PTPN9-201ENST00000306726 RILPL2Q969X0 211 aa18.05■□□□□ 0.48
PTPN9-201ENST00000306726 ZNF335Q9H4Z2 1342 aaPredicted RBP18.04■□□□□ 0.48
PTPN9-201ENST00000306726 LTBP4Q8N2S1 1624 aa18.03■□□□□ 0.48
PTPN9-201ENST00000306726 GDPD2Q9HCC8 539 aa18.02■□□□□ 0.48
PTPN9-201ENST00000306726 ZRANB1Q9UGI0 708 aa18.02■□□□□ 0.48
PTPN9-201ENST00000306726 UBE2Q2Q8WVN8 375 aa18.01■□□□□ 0.47
PTPN9-201ENST00000306726 LTV1Q96GA3 475 aaPredicted RBP18.01■□□□□ 0.47
PTPN9-201ENST00000306726 EDC4Q6P2E9 1401 aaKnown RBP18.01■□□□□ 0.47
PTPN9-201ENST00000306726 KIAA1211Q6ZU35 1233 aa18.01■□□□□ 0.47
PTPN9-201ENST00000306726 GAS2L2Q8NHY3 880 aa18.01■□□□□ 0.47
PTPN9-201ENST00000306726 OTUD7AQ8TE49 926 aaPredicted RBP18.01■□□□□ 0.47
PTPN9-201ENST00000306726 XPCQ01831 940 aaPredicted RBP18.01■□□□□ 0.47
PTPN9-201ENST00000306726 POLR3AO14802 1390 aaPredicted RBP18.01■□□□□ 0.47
PTPN9-201ENST00000306726 CPSF1Q10570 1443 aaKnown RBP18.01■□□□□ 0.47
PTPN9-201ENST00000306726 AKAP12Q02952 1782 aa18■□□□□ 0.47
PTPN9-201ENST00000306726 ANTXR1Q9H6X2 564 aa18■□□□□ 0.47
PTPN9-201ENST00000306726 MAP4K4O95819 1239 aaPredicted RBP18■□□□□ 0.47
PTPN9-201ENST00000306726 TBC1D9Q6ZT07 1266 aa17.99■□□□□ 0.47
PTPN9-201ENST00000306726 EMILIN1Q9Y6C2 1016 aa17.99■□□□□ 0.47
PTPN9-201ENST00000306726 WDR63Q8IWG1 891 aa17.99■□□□□ 0.47
PTPN9-201ENST00000306726 DDX54Q8TDD1 881 aaKnown RBP17.99■□□□□ 0.47
PTPN9-201ENST00000306726 MON2Q7Z3U7 1717 aa17.99■□□□□ 0.47
PTPN9-201ENST00000306726 PKP1Q13835 747 aa17.99■□□□□ 0.47
PTPN9-201ENST00000306726 XIRP1Q702N8 1843 aaKnown RBP17.99■□□□□ 0.47
PTPN9-201ENST00000306726 PKNOX2Q96KN3 472 aa17.98■□□□□ 0.47
PTPN9-201ENST00000306726 ZMYND15Q9H091 742 aa17.98■□□□□ 0.47
PTPN9-201ENST00000306726 C1orf167Q5SNV9 1468 aa17.98■□□□□ 0.47
PTPN9-201ENST00000306726 MST1RQ04912 1400 aa17.98■□□□□ 0.47
PTPN9-201ENST00000306726 PHACTR3Q96KR7 559 aa17.98■□□□□ 0.47
PTPN9-201ENST00000306726 TTC21AQ8NDW8 1320 aa17.98■□□□□ 0.47
PTPN9-201ENST00000306726 PRR36Q9H6K5 1346 aa17.98■□□□□ 0.47
PTPN9-201ENST00000306726 TRMT2AQ8IZ69 625 aaKnown RBP17.97■□□□□ 0.47
PTPN9-201ENST00000306726 A0A1W2PP64 1363 aa17.97■□□□□ 0.47
PTPN9-201ENST00000306726 PHF8Q9UPP1 1060 aa17.97■□□□□ 0.47
PTPN9-201ENST00000306726 PRDM10Q9NQV6 1147 aa17.97■□□□□ 0.47
PTPN9-201ENST00000306726 ERBB4Q15303 1308 aa17.96■□□□□ 0.47
PTPN9-201ENST00000306726 NUTM2GQ5VZR2 741 aa17.96■□□□□ 0.47
PTPN9-201ENST00000306726 FAM177BA6PVY3 158 aa17.96■□□□□ 0.46
PTPN9-201ENST00000306726 F6X3S4 739 aa17.96■□□□□ 0.46
PTPN9-201ENST00000306726 ZGPATQ8N5A5 531 aaKnown RBP17.96■□□□□ 0.46
PTPN9-201ENST00000306726 NGDNQ8NEJ9 315 aaKnown RBP17.95■□□□□ 0.46
PTPN9-201ENST00000306726 UPF3BQ9BZI7 483 aaKnown RBP17.95■□□□□ 0.46
PTPN9-201ENST00000306726 CD163L1Q9NR16 1453 aa17.95■□□□□ 0.46
PTPN9-201ENST00000306726 TWISTNBQ3B726 338 aaPredicted RBP17.95■□□□□ 0.46
PTPN9-201ENST00000306726 K7ELQ4 463 aaPredicted RBP17.95■□□□□ 0.46
PTPN9-201ENST00000306726 NEK4P51957 841 aa17.94■□□□□ 0.46
PTPN9-201ENST00000306726 SYCE3A1L190 88 aa17.94■□□□□ 0.46
PTPN9-201ENST00000306726 MCM10Q7L590 875 aa17.94■□□□□ 0.46
PTPN9-201ENST00000306726 ANO2Q9NQ90 1003 aa17.94■□□□□ 0.46
PTPN9-201ENST00000306726 USP6P35125 1406 aa17.94■□□□□ 0.46
PTPN9-201ENST00000306726 PSME1Q06323 249 aa17.93■□□□□ 0.46
PTPN9-201ENST00000306726 CCDC27Q2M243 656 aa17.93■□□□□ 0.46
PTPN9-201ENST00000306726 CASC1Q6TDU7 716 aa17.93■□□□□ 0.46
PTPN9-201ENST00000306726 EXOC6BQ9Y2D4 811 aa17.93■□□□□ 0.46
PTPN9-201ENST00000306726 CCDC9Q9Y3X0 531 aaKnown RBP17.93■□□□□ 0.46
PTPN9-201ENST00000306726 ACEP12821 1306 aa17.93■□□□□ 0.46
PTPN9-201ENST00000306726 ANKRD26Q9UPS8 1709 aa17.92■□□□□ 0.46
PTPN9-201ENST00000306726 ZNF830Q96NB3 372 aaPredicted RBP17.92■□□□□ 0.46
PTPN9-201ENST00000306726 KIF20BQ96Q89 1820 aa17.92■□□□□ 0.46
PTPN9-201ENST00000306726 NRKQ7Z2Y5 1582 aa17.92■□□□□ 0.46
PTPN9-201ENST00000306726 TRIM35Q9UPQ4 493 aa17.91■□□□□ 0.46
PTPN9-201ENST00000306726 NPHP3Q7Z494 1330 aa17.91■□□□□ 0.46
PTPN9-201ENST00000306726 ESCO1Q5FWF5 840 aa17.91■□□□□ 0.46
PTPN9-201ENST00000306726 C8orf58Q8NAV2 365 aa17.9■□□□□ 0.46
PTPN9-201ENST00000306726 KIF16BQ96L93 1317 aa17.9■□□□□ 0.46
PTPN9-201ENST00000306726 NME9Q86XW9 330 aa17.9■□□□□ 0.46
PTPN9-201ENST00000306726 TSC1Q92574 1164 aa17.89■□□□□ 0.45
PTPN9-201ENST00000306726 FYB1O15117 783 aa17.89■□□□□ 0.45
PTPN9-201ENST00000306726 CDC45O75419 566 aa17.89■□□□□ 0.45
PTPN9-201ENST00000306726 USP54Q70EL1 1684 aa17.88■□□□□ 0.45
PTPN9-201ENST00000306726 ZBTB40Q9NUA8 1239 aa17.88■□□□□ 0.45
PTPN9-201ENST00000306726 SBNO1A3KN83 1393 aa17.88■□□□□ 0.45
PTPN9-201ENST00000306726 RGPD8O14715 1765 aaPredicted RBP17.88■□□□□ 0.45
PTPN9-201ENST00000306726 TOM1O60784 492 aa17.88■□□□□ 0.45
PTPN9-201ENST00000306726 BAG4O95429 457 aaKnown RBP17.88■□□□□ 0.45
PTPN9-201ENST00000306726 IL1RAPL2Q9NP60 686 aa17.88■□□□□ 0.45
PTPN9-201ENST00000306726 SLAIN2Q9P270 581 aa17.88■□□□□ 0.45
PTPN9-201ENST00000306726 SSH2Q76I76 1423 aa17.88■□□□□ 0.45
PTPN9-201ENST00000306726 OS9Q13438 667 aaPredicted RBP17.87■□□□□ 0.45
PTPN9-201ENST00000306726 USP31Q70CQ4 1352 aa17.87■□□□□ 0.45
PTPN9-201ENST00000306726 TTC21BQ7Z4L5 1316 aa17.87■□□□□ 0.45
PTPN9-201ENST00000306726 INSRP06213 1382 aa17.86■□□□□ 0.45
PTPN9-201ENST00000306726 CLCN1P35523 988 aa17.86■□□□□ 0.45
PTPN9-201ENST00000306726 SULT6B1Q6IMI4 303 aa17.86■□□□□ 0.45
PTPN9-201ENST00000306726 NUCB1Q02818 461 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms