RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 FMNL2Q96PY5 1086 aa22.05■■□□□ 1.12
PCDH1-201ENST00000287008 CCDC69A6NI79 296 aa22.05■■□□□ 1.12
PCDH1-201ENST00000287008 BLOC1S2Q6QNY1 142 aa22.05■■□□□ 1.12
PCDH1-201ENST00000287008 MAP4K4O95819 1239 aaPredicted RBP22.05■■□□□ 1.12
PCDH1-201ENST00000287008 TMEM57Q8N5G2 664 aa22.05■■□□□ 1.12
PCDH1-201ENST00000287008 UBAC1Q9BSL1 405 aa22.05■■□□□ 1.12
PCDH1-201ENST00000287008 AKAP2Q9Y2D5 859 aa22.05■■□□□ 1.12
PCDH1-201ENST00000287008 MAP3K1Q13233 1512 aa22.05■■□□□ 1.12
PCDH1-201ENST00000287008 TTC21BQ7Z4L5 1316 aa22.05■■□□□ 1.12
PCDH1-201ENST00000287008 KIF1BPQ96EK5 621 aa22.04■■□□□ 1.12
PCDH1-201ENST00000287008 ZNF396Q96N95 335 aaPredicted RBP22.04■■□□□ 1.12
PCDH1-201ENST00000287008 EXOC6BQ9Y2D4 811 aa22.04■■□□□ 1.12
PCDH1-201ENST00000287008 SOGA3Q5TF21 947 aa22.04■■□□□ 1.12
PCDH1-201ENST00000287008 NUP133Q8WUM0 1156 aa22.04■■□□□ 1.12
PCDH1-201ENST00000287008 IFNL2Q8IZJ0 200 aa22.04■■□□□ 1.12
PCDH1-201ENST00000287008 TOM1O60784 492 aa22.03■■□□□ 1.12
PCDH1-201ENST00000287008 ZNF592Q92610 1267 aa22.03■■□□□ 1.12
PCDH1-201ENST00000287008 DBF4Q9UBU7 674 aaPredicted RBP22.03■■□□□ 1.12
PCDH1-201ENST00000287008 ACEP12821 1306 aa22.03■■□□□ 1.12
PCDH1-201ENST00000287008 FAM135AQ9P2D6 1515 aa22.03■■□□□ 1.12
PCDH1-201ENST00000287008 TMEM132AQ24JP5 1023 aa22.03■■□□□ 1.12
PCDH1-201ENST00000287008 MYD88Q99836 296 aa22.03■■□□□ 1.12
PCDH1-201ENST00000287008 MSH6P52701 1360 aa22.03■■□□□ 1.12
PCDH1-201ENST00000287008 TEX14Q8IWB6 1497 aa22.02■■□□□ 1.12
PCDH1-201ENST00000287008 TRMT112Q9UI30 125 aaKnown RBP22.02■■□□□ 1.12
PCDH1-201ENST00000287008 MBD3O95983 291 aa22.02■■□□□ 1.12
PCDH1-201ENST00000287008 KRT18P05783 430 aaKnown RBP22.02■■□□□ 1.12
PCDH1-201ENST00000287008 CAVIN4Q5BKX8 364 aa22.02■■□□□ 1.12
PCDH1-201ENST00000287008 AIDAQ96BJ3 306 aa22.02■■□□□ 1.11
PCDH1-201ENST00000287008 IFIT5Q13325 482 aaKnown RBP22.01■■□□□ 1.11
PCDH1-201ENST00000287008 ASXL2Q76L83 1435 aa22.01■■□□□ 1.11
PCDH1-201ENST00000287008 SSH1Q8WYL5 1049 aa22.01■■□□□ 1.11
PCDH1-201ENST00000287008 TEX13AQ9BXU3 409 aaPredicted RBP22.01■■□□□ 1.11
PCDH1-201ENST00000287008 WDR97A6NE52 1622 aa22.01■■□□□ 1.11
PCDH1-201ENST00000287008 SCAF11Q99590 1463 aaKnown RBP22.01■■□□□ 1.11
PCDH1-201ENST00000287008 KRT32Q14532 448 aa22■■□□□ 1.11
PCDH1-201ENST00000287008 ALDH1L2Q3SY69 923 aa22■■□□□ 1.11
PCDH1-201ENST00000287008 SPINK5Q9NQ38 1064 aaPredicted RBP22■■□□□ 1.11
PCDH1-201ENST00000287008 UBAP1LF5GYI3 381 aa22■■□□□ 1.11
PCDH1-201ENST00000287008 STK3Q13188 491 aa22■■□□□ 1.11
PCDH1-201ENST00000287008 CHRNA2Q15822 529 aa22■■□□□ 1.11
PCDH1-201ENST00000287008 ODF2Q5BJF6 829 aa22■■□□□ 1.11
PCDH1-201ENST00000287008 CWC27Q6UX04 472 aaKnown RBP22■■□□□ 1.11
PCDH1-201ENST00000287008 HYPKQ9NX55 129 aa22■■□□□ 1.11
PCDH1-201ENST00000287008 KDM5BQ9UGL1 1544 aa22■■□□□ 1.11
PCDH1-201ENST00000287008 FIBPO43427 364 aa22■■□□□ 1.11
PCDH1-201ENST00000287008 DNAAF4Q8WXU2 420 aa22■■□□□ 1.11
PCDH1-201ENST00000287008 GLRX3O76003 335 aaKnown RBP21.99■■□□□ 1.11
PCDH1-201ENST00000287008 NAP1L1P55209 391 aaKnown RBP21.99■■□□□ 1.11
PCDH1-201ENST00000287008 NPHP3Q7Z494 1330 aa21.99■■□□□ 1.11
PCDH1-201ENST00000287008 UHRF1BP1LA0JNW5 1464 aa21.98■■□□□ 1.11
PCDH1-201ENST00000287008 WWC2Q6AWC2 1192 aa21.98■■□□□ 1.11
PCDH1-201ENST00000287008 PLCH2O75038 1416 aa21.98■■□□□ 1.11
PCDH1-201ENST00000287008 CDKL5O76039 1030 aa21.98■■□□□ 1.11
PCDH1-201ENST00000287008 NSD2O96028 1365 aa21.97■■□□□ 1.11
PCDH1-201ENST00000287008 GPATCH8Q9UKJ3 1502 aaKnown RBP21.97■■□□□ 1.11
PCDH1-201ENST00000287008 ANKRD24Q8TF21 1146 aa21.97■■□□□ 1.11
PCDH1-201ENST00000287008 ANKIB1Q9P2G1 1089 aa21.97■■□□□ 1.11
PCDH1-201ENST00000287008 RAB11FIP3O75154 756 aa21.96■■□□□ 1.11
PCDH1-201ENST00000287008 CEBPZQ03701 1054 aaKnown RBP21.96■■□□□ 1.11
PCDH1-201ENST00000287008 AEBP1Q8IUX7 1158 aa21.96■■□□□ 1.11
PCDH1-201ENST00000287008 A0A087WZG4 1122 aa21.96■■□□□ 1.11
PCDH1-201ENST00000287008 ZNF287Q9HBT7 754 aa21.96■■□□□ 1.11
PCDH1-201ENST00000287008 PEG3Q9GZU2 1588 aa21.96■■□□□ 1.11
PCDH1-201ENST00000287008 NUTM1Q86Y26 1132 aa21.96■■□□□ 1.11
PCDH1-201ENST00000287008 C11orf95C9JLR9 678 aaPredicted RBP21.95■■□□□ 1.1
PCDH1-201ENST00000287008 ZBTB3Q9H5J0 574 aa21.95■■□□□ 1.1
PCDH1-201ENST00000287008 GPS2Q13227 327 aa21.95■■□□□ 1.1
PCDH1-201ENST00000287008 IMMTQ16891 758 aaKnown RBP21.95■■□□□ 1.1
PCDH1-201ENST00000287008 JAKMIP1Q96N16 626 aaKnown RBP21.95■■□□□ 1.1
PCDH1-201ENST00000287008 RARSP54136 660 aaKnown RBP21.94■■□□□ 1.1
PCDH1-201ENST00000287008 NOL7Q9UMY1 257 aaKnown RBP21.94■■□□□ 1.1
PCDH1-201ENST00000287008 ATP10BO94823 1461 aa21.94■■□□□ 1.1
PCDH1-201ENST00000287008 RPGRQ92834 1020 aaKnown RBP21.94■■□□□ 1.1
PCDH1-201ENST00000287008 F6X3S4 739 aa21.94■■□□□ 1.1
PCDH1-201ENST00000287008 GPTP24298 496 aa21.94■■□□□ 1.1
PCDH1-201ENST00000287008 PIP4K2AP48426 406 aaPredicted RBP21.94■■□□□ 1.1
PCDH1-201ENST00000287008 ZFYVE27Q5T4F4 411 aa21.94■■□□□ 1.1
PCDH1-201ENST00000287008 LARP1BQ659C4 914 aaKnown RBP21.94■■□□□ 1.1
PCDH1-201ENST00000287008 AK7Q96M32 723 aa21.93■■□□□ 1.1
PCDH1-201ENST00000287008 FILIP1LQ4L180 1135 aa21.93■■□□□ 1.1
PCDH1-201ENST00000287008 RNF214Q8ND24 703 aa21.92■■□□□ 1.1
PCDH1-201ENST00000287008 ANKRD18BA2A2Z9 1011 aa21.92■■□□□ 1.1
PCDH1-201ENST00000287008 PDILTQ8N807 584 aa21.92■■□□□ 1.1
PCDH1-201ENST00000287008 WDR33Q9C0J8 1336 aaKnown RBP21.92■■□□□ 1.1
PCDH1-201ENST00000287008 LETM1O95202 739 aaPredicted RBP21.92■■□□□ 1.1
PCDH1-201ENST00000287008 MX1P20591 662 aa21.92■■□□□ 1.1
PCDH1-201ENST00000287008 A2MP01023 1474 aa21.92■■□□□ 1.1
PCDH1-201ENST00000287008 USP5P45974 858 aa21.92■■□□□ 1.1
PCDH1-201ENST00000287008 FLIIQ13045 1269 aa21.92■■□□□ 1.1
PCDH1-201ENST00000287008 ZSCAN31Q96LW9 406 aaPredicted RBP21.92■■□□□ 1.1
PCDH1-201ENST00000287008 TTC21AQ8NDW8 1320 aa21.91■■□□□ 1.1
PCDH1-201ENST00000287008 BCL11BQ9C0K0 894 aaPredicted RBP21.91■■□□□ 1.1
PCDH1-201ENST00000287008 ME1P48163 572 aa21.91■■□□□ 1.1
PCDH1-201ENST00000287008 KRT85P78386 507 aa21.91■■□□□ 1.1
PCDH1-201ENST00000287008 MAP3K12Q12852 859 aa21.91■■□□□ 1.1
PCDH1-201ENST00000287008 DZIP1Q86YF9 867 aaKnown RBP21.91■■□□□ 1.1
PCDH1-201ENST00000287008 PDRG1Q9NUG6 133 aa21.91■■□□□ 1.1
PCDH1-201ENST00000287008 U3KPZ7 1027 aaPredicted RBP21.91■■□□□ 1.1
PCDH1-201ENST00000287008 RPRD2Q5VT52 1461 aaKnown RBP21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms