RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 MBIPQ9NS73 344 aa13.79□□□□□ -0.2
VPS33A-201ENST00000267199 IL16Q14005 1332 aa13.79□□□□□ -0.2
VPS33A-201ENST00000267199 ANKRD36BQ8N2N9 1353 aa13.79□□□□□ -0.2
VPS33A-201ENST00000267199 WASLO00401 505 aaPredicted RBP13.79□□□□□ -0.2
VPS33A-201ENST00000267199 NEUROD6Q96NK8 337 aa13.79□□□□□ -0.2
VPS33A-201ENST00000267199 FILIP1Q7Z7B0 1213 aa13.79□□□□□ -0.2
VPS33A-201ENST00000267199 KDM2BQ8NHM5 1336 aa13.78□□□□□ -0.2
VPS33A-201ENST00000267199 STK3Q13188 491 aa13.78□□□□□ -0.2
VPS33A-201ENST00000267199 KLHL40Q2TBA0 621 aa13.78□□□□□ -0.2
VPS33A-201ENST00000267199 FERMT3Q86UX7 667 aa13.78□□□□□ -0.2
VPS33A-201ENST00000267199 SPDYE4A6NLX3 237 aa13.78□□□□□ -0.2
VPS33A-201ENST00000267199 SMC2O95347 1197 aa13.78□□□□□ -0.2
VPS33A-201ENST00000267199 TNMDQ9H2S6 317 aa13.78□□□□□ -0.2
VPS33A-201ENST00000267199 ZNF830Q96NB3 372 aaPredicted RBP13.77□□□□□ -0.2
VPS33A-201ENST00000267199 PLEKHO1Q53GL0 409 aaPredicted RBP13.77□□□□□ -0.21
VPS33A-201ENST00000267199 ESCO1Q5FWF5 840 aa13.77□□□□□ -0.21
VPS33A-201ENST00000267199 ZNF530Q6P9A1 599 aaPredicted RBP13.77□□□□□ -0.21
VPS33A-201ENST00000267199 EIF4G3O43432 1585 aaKnown RBP13.77□□□□□ -0.21
VPS33A-201ENST00000267199 PBRM1Q86U86 1689 aa13.77□□□□□ -0.21
VPS33A-201ENST00000267199 NUCB1Q02818 461 aa13.77□□□□□ -0.21
VPS33A-201ENST00000267199 KDM4AO75164 1064 aa13.76□□□□□ -0.21
VPS33A-201ENST00000267199 CAMK4Q16566 473 aa13.76□□□□□ -0.21
VPS33A-201ENST00000267199 PDILTQ8N807 584 aa13.76□□□□□ -0.21
VPS33A-201ENST00000267199 LARP6Q9BRS8 491 aaKnown RBP13.76□□□□□ -0.21
VPS33A-201ENST00000267199 KINO60870 393 aaKnown RBP13.76□□□□□ -0.21
VPS33A-201ENST00000267199 ZSCAN23Q3MJ62 389 aa13.76□□□□□ -0.21
VPS33A-201ENST00000267199 NUTM1Q86Y26 1132 aa13.76□□□□□ -0.21
VPS33A-201ENST00000267199 DDX54Q8TDD1 881 aaKnown RBP13.76□□□□□ -0.21
VPS33A-201ENST00000267199 ZMYM4Q5VZL5 1548 aa13.76□□□□□ -0.21
VPS33A-201ENST00000267199 PSMA5P28066 241 aa13.76□□□□□ -0.21
VPS33A-201ENST00000267199 CHMP4CQ96CF2 233 aa13.76□□□□□ -0.21
VPS33A-201ENST00000267199 LARP1BQ659C4 914 aaKnown RBP13.75□□□□□ -0.21
VPS33A-201ENST00000267199 MX1P20591 662 aa13.75□□□□□ -0.21
VPS33A-201ENST00000267199 SKIDA1Q1XH10 827 aa13.75□□□□□ -0.21
VPS33A-201ENST00000267199 SIL1Q9H173 461 aa13.75□□□□□ -0.21
VPS33A-201ENST00000267199 KRT85P78386 507 aa13.75□□□□□ -0.21
VPS33A-201ENST00000267199 LRRFIP1Q32MZ4 808 aaKnown RBP13.75□□□□□ -0.21
VPS33A-201ENST00000267199 CWC27Q6UX04 472 aaKnown RBP13.75□□□□□ -0.21
VPS33A-201ENST00000267199 FAM177A1Q8N128 213 aaPredicted RBP13.75□□□□□ -0.21
VPS33A-201ENST00000267199 PDE4CQ08493 712 aa13.74□□□□□ -0.21
VPS33A-201ENST00000267199 TTLL5Q6EMB2 1281 aa13.74□□□□□ -0.21
VPS33A-201ENST00000267199 CPLX2Q6PUV4 134 aaKnown RBP13.74□□□□□ -0.21
VPS33A-201ENST00000267199 APPP05067 770 aa13.74□□□□□ -0.21
VPS33A-201ENST00000267199 PDCP20941 246 aa13.74□□□□□ -0.21
VPS33A-201ENST00000267199 PPP4R3BQ5MIZ7 849 aa13.74□□□□□ -0.21
VPS33A-201ENST00000267199 BLMP54132 1417 aaPredicted RBP13.74□□□□□ -0.21
VPS33A-201ENST00000267199 TRERF1Q96PN7 1200 aa13.74□□□□□ -0.21
VPS33A-201ENST00000267199 CGNQ9P2M7 1197 aaKnown RBP13.74□□□□□ -0.21
VPS33A-201ENST00000267199 NPC1L1Q9UHC9 1359 aa13.74□□□□□ -0.21
VPS33A-201ENST00000267199 CYP46A1Q9Y6A2 500 aa13.74□□□□□ -0.21
VPS33A-201ENST00000267199 GNAT3A8MTJ3 354 aa13.73□□□□□ -0.21
VPS33A-201ENST00000267199 SYNE3Q6ZMZ3 975 aa13.73□□□□□ -0.21
VPS33A-201ENST00000267199 TPM1P09493 284 aa13.73□□□□□ -0.21
VPS33A-201ENST00000267199 DNAJC2Q99543 621 aaKnown RBP13.73□□□□□ -0.21
VPS33A-201ENST00000267199 NUP62CLQ9H1M0 184 aa13.73□□□□□ -0.21
VPS33A-201ENST00000267199 NAT10Q9H0A0 1025 aaKnown RBP13.73□□□□□ -0.21
VPS33A-201ENST00000267199 ERC1Q8IUD2 1116 aa13.73□□□□□ -0.21
VPS33A-201ENST00000267199 C16orf45Q96MC5 204 aaPredicted RBP13.73□□□□□ -0.21
VPS33A-201ENST00000267199 THEMISQ8N1K5 641 aaPredicted RBP13.72□□□□□ -0.21
VPS33A-201ENST00000267199 TSPYL6Q8N831 410 aa13.72□□□□□ -0.21
VPS33A-201ENST00000267199 C8orf58Q8NAV2 365 aa13.72□□□□□ -0.21
VPS33A-201ENST00000267199 ARHGAP45Q92619 1136 aa13.72□□□□□ -0.21
VPS33A-201ENST00000267199 POLKQ9UBT6 870 aa13.72□□□□□ -0.21
VPS33A-201ENST00000267199 PRIM1P49642 420 aaKnown RBP13.72□□□□□ -0.21
VPS33A-201ENST00000267199 TSR1Q2NL82 804 aaKnown RBP13.72□□□□□ -0.21
VPS33A-201ENST00000267199 SMC5Q8IY18 1101 aa13.72□□□□□ -0.21
VPS33A-201ENST00000267199 HSP90B2PQ58FF3 399 aa13.72□□□□□ -0.21
VPS33A-201ENST00000267199 DENND4BO75064 1496 aaPredicted RBP13.72□□□□□ -0.21
VPS33A-201ENST00000267199 DYNC1I1O14576 645 aa13.71□□□□□ -0.21
VPS33A-201ENST00000267199 TSHZ3Q63HK5 1081 aa13.71□□□□□ -0.21
VPS33A-201ENST00000267199 JAKMIP1Q96N16 626 aaKnown RBP13.71□□□□□ -0.21
VPS33A-201ENST00000267199 ZBTB40Q9NUA8 1239 aa13.71□□□□□ -0.21
VPS33A-201ENST00000267199 ADCY5O95622 1261 aa13.71□□□□□ -0.21
VPS33A-201ENST00000267199 HCLS1P14317 486 aaPredicted RBP13.71□□□□□ -0.21
VPS33A-201ENST00000267199 TRDNQ13061 729 aa13.71□□□□□ -0.21
VPS33A-201ENST00000267199 WASHC4Q2M389 1173 aa13.71□□□□□ -0.21
VPS33A-201ENST00000267199 AACSQ86V21 672 aa13.71□□□□□ -0.21
VPS33A-201ENST00000267199 CCDC83Q8IWF9 413 aa13.71□□□□□ -0.21
VPS33A-201ENST00000267199 ZRANB1Q9UGI0 708 aa13.71□□□□□ -0.21
VPS33A-201ENST00000267199 IGSF3O75054 1194 aa13.71□□□□□ -0.22
VPS33A-201ENST00000267199 EVA1CP58658 441 aa13.71□□□□□ -0.22
VPS33A-201ENST00000267199 MEIS3Q99687 375 aa13.71□□□□□ -0.22
VPS33A-201ENST00000267199 LRRFIP2Q9Y608 721 aaKnown RBP13.71□□□□□ -0.22
VPS33A-201ENST00000267199 HIP1O00291 1037 aa13.7□□□□□ -0.22
VPS33A-201ENST00000267199 TTC22Q5TAA0 569 aa13.7□□□□□ -0.22
VPS33A-201ENST00000267199 PHACTR3Q96KR7 559 aa13.7□□□□□ -0.22
VPS33A-201ENST00000267199 SPATA32Q96LK8 384 aa13.7□□□□□ -0.22
VPS33A-201ENST00000267199 TRIM29Q14134 588 aa13.7□□□□□ -0.22
VPS33A-201ENST00000267199 MRPL50Q8N5N7 158 aaKnown RBP13.7□□□□□ -0.22
VPS33A-201ENST00000267199 VAMP4O75379 141 aa13.7□□□□□ -0.22
VPS33A-201ENST00000267199 CKAP2LQ8IYA6 745 aa13.7□□□□□ -0.22
VPS33A-201ENST00000267199 FLIIQ13045 1269 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 CCDC183Q5T5S1 534 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 USHBP1Q8N6Y0 703 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 TTC12Q9H892 705 aaPredicted RBP13.69□□□□□ -0.22
VPS33A-201ENST00000267199 INSRP06213 1382 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 TARBP1Q13395 1621 aaKnown RBP13.69□□□□□ -0.22
VPS33A-201ENST00000267199 FAM177BA6PVY3 158 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 MAP3K11Q16584 847 aa13.69□□□□□ -0.22
VPS33A-201ENST00000267199 HSP90AB2PQ58FF8 381 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms