RNA–Protein interactions for RNA: ENST00000264012.8

CDH3-201, Transcript of cadherin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH3, Length 4,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-201ENST00000264012 MPRIPQ6WCQ1 1025 aa16.69■□□□□ 0.26
CDH3-201ENST00000264012 KINO60870 393 aaKnown RBP16.69■□□□□ 0.26
CDH3-201ENST00000264012 LARP1Q6PKG0 1096 aaKnown RBP16.69■□□□□ 0.26
CDH3-201ENST00000264012 BLOC1S2Q6QNY1 142 aa16.69■□□□□ 0.26
CDH3-201ENST00000264012 SAMD1Q6SPF0 538 aaPredicted RBP16.69■□□□□ 0.26
CDH3-201ENST00000264012 HOMER1Q86YM7 354 aa16.69■□□□□ 0.26
CDH3-201ENST00000264012 NAT10Q9H0A0 1025 aaKnown RBP16.69■□□□□ 0.26
CDH3-201ENST00000264012 MX1P20591 662 aa16.68■□□□□ 0.26
CDH3-201ENST00000264012 SMARCA5O60264 1052 aaPredicted RBP16.68■□□□□ 0.26
CDH3-201ENST00000264012 SLC3A2P08195 630 aaKnown RBP16.68■□□□□ 0.26
CDH3-201ENST00000264012 NUP160Q12769 1436 aa16.68■□□□□ 0.26
CDH3-201ENST00000264012 CTTNBP2Q8WZ74 1663 aa16.68■□□□□ 0.26
CDH3-201ENST00000264012 KIAA0556O60303 1618 aa16.68■□□□□ 0.26
CDH3-201ENST00000264012 WDR33Q9C0J8 1336 aaKnown RBP16.68■□□□□ 0.26
CDH3-201ENST00000264012 TNRQ92752 1358 aa16.68■□□□□ 0.26
CDH3-201ENST00000264012 ADAMTS12P58397 1594 aa16.68■□□□□ 0.26
CDH3-201ENST00000264012 NACAP1Q9BZK3 213 aa16.67■□□□□ 0.26
CDH3-201ENST00000264012 LETM1O95202 739 aaPredicted RBP16.67■□□□□ 0.26
CDH3-201ENST00000264012 STARD3NLO95772 234 aa16.67■□□□□ 0.26
CDH3-201ENST00000264012 CCDC85AQ96PX6 553 aaPredicted RBP16.67■□□□□ 0.26
CDH3-201ENST00000264012 AEBP1Q8IUX7 1158 aa16.67■□□□□ 0.26
CDH3-201ENST00000264012 FAM43AQ8N2R8 423 aa16.67■□□□□ 0.26
CDH3-201ENST00000264012 VSIG10Q8N0Z9 540 aa16.67■□□□□ 0.26
CDH3-201ENST00000264012 JAKMIP1Q96N16 626 aaKnown RBP16.67■□□□□ 0.26
CDH3-201ENST00000264012 A0A0U1RQG5 324 aaPredicted RBP16.66■□□□□ 0.26
CDH3-201ENST00000264012 FBLN1P23142 703 aa16.66■□□□□ 0.26
CDH3-201ENST00000264012 CEBPZQ03701 1054 aaKnown RBP16.66■□□□□ 0.26
CDH3-201ENST00000264012 ZSCAN25Q6NSZ9 544 aa16.66■□□□□ 0.26
CDH3-201ENST00000264012 OLFM4Q6UX06 510 aa16.66■□□□□ 0.26
CDH3-201ENST00000264012 KLHL34Q8N239 644 aa16.66■□□□□ 0.26
CDH3-201ENST00000264012 ZNF396Q96N95 335 aaPredicted RBP16.66■□□□□ 0.26
CDH3-201ENST00000264012 WDR62O43379 1518 aa16.66■□□□□ 0.26
CDH3-201ENST00000264012 RAB11FIP3O75154 756 aa16.66■□□□□ 0.26
CDH3-201ENST00000264012 STK38Q15208 465 aa16.66■□□□□ 0.26
CDH3-201ENST00000264012 ZNF518AQ6AHZ1 1483 aa16.66■□□□□ 0.26
CDH3-201ENST00000264012 WDR7Q9Y4E6 1490 aa16.66■□□□□ 0.26
CDH3-201ENST00000264012 GLRX3O76003 335 aaKnown RBP16.65■□□□□ 0.26
CDH3-201ENST00000264012 CIZ1Q9ULV3 898 aaPredicted RBP16.65■□□□□ 0.26
CDH3-201ENST00000264012 DNAAF4Q8WXU2 420 aa16.65■□□□□ 0.26
CDH3-201ENST00000264012 FAM83GA6ND36 823 aa16.65■□□□□ 0.26
CDH3-201ENST00000264012 PDRG1Q9NUG6 133 aa16.65■□□□□ 0.26
CDH3-201ENST00000264012 LARP1BQ659C4 914 aaKnown RBP16.65■□□□□ 0.26
CDH3-201ENST00000264012 MBIPQ9NS73 344 aa16.65■□□□□ 0.26
CDH3-201ENST00000264012 FLIIQ13045 1269 aa16.64■□□□□ 0.25
CDH3-201ENST00000264012 TSPY26PQ9H489 355 aa16.64■□□□□ 0.25
CDH3-201ENST00000264012 IL16Q14005 1332 aa16.64■□□□□ 0.25
CDH3-201ENST00000264012 PIP4K2BP78356 416 aa16.64■□□□□ 0.25
CDH3-201ENST00000264012 TMOD3Q9NYL9 352 aa16.64■□□□□ 0.25
CDH3-201ENST00000264012 DBF4Q9UBU7 674 aaPredicted RBP16.64■□□□□ 0.25
CDH3-201ENST00000264012 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.64■□□□□ 0.25
CDH3-201ENST00000264012 MYD88Q99836 296 aa16.64■□□□□ 0.25
CDH3-201ENST00000264012 PTPRCP08575 1304 aa16.63■□□□□ 0.25
CDH3-201ENST00000264012 CCDC43Q96MW1 224 aaKnown RBP16.63■□□□□ 0.25
CDH3-201ENST00000264012 LRRFIP2Q9Y608 721 aaKnown RBP16.63■□□□□ 0.25
CDH3-201ENST00000264012 CTNNA3Q9UI47 895 aa16.63■□□□□ 0.25
CDH3-201ENST00000264012 KRT32Q14532 448 aa16.63■□□□□ 0.25
CDH3-201ENST00000264012 KRT28Q7Z3Y7 464 aa16.63■□□□□ 0.25
CDH3-201ENST00000264012 ZSCAN31Q96LW9 406 aaPredicted RBP16.63■□□□□ 0.25
CDH3-201ENST00000264012 PHF23Q9BUL5 403 aaPredicted RBP16.63■□□□□ 0.25
CDH3-201ENST00000264012 TRIM5Q9C035 493 aa16.63■□□□□ 0.25
CDH3-201ENST00000264012 CCDC39Q9UFE4 941 aa16.63■□□□□ 0.25
CDH3-201ENST00000264012 IKQ13123 557 aaPredicted RBP16.63■□□□□ 0.25
CDH3-201ENST00000264012 KRT85P78386 507 aa16.62■□□□□ 0.25
CDH3-201ENST00000264012 STK11IPQ8N1F8 1099 aa16.62■□□□□ 0.25
CDH3-201ENST00000264012 TESK2Q96S53 571 aa16.62■□□□□ 0.25
CDH3-201ENST00000264012 ASXL1Q8IXJ9 1541 aa16.62■□□□□ 0.25
CDH3-201ENST00000264012 TRIM22Q8IYM9 498 aa16.62■□□□□ 0.25
CDH3-201ENST00000264012 UHRF1BP1LA0JNW5 1464 aa16.61■□□□□ 0.25
CDH3-201ENST00000264012 MCM4P33991 863 aa16.61■□□□□ 0.25
CDH3-201ENST00000264012 CCDC70Q6NSX1 233 aa16.61■□□□□ 0.25
CDH3-201ENST00000264012 JMYQ8N9B5 988 aa16.61■□□□□ 0.25
CDH3-201ENST00000264012 DCAF8L1A6NGE4 600 aa16.61■□□□□ 0.25
CDH3-201ENST00000264012 HYPKQ9NX55 129 aa16.61■□□□□ 0.25
CDH3-201ENST00000264012 PARD3Q8TEW0 1356 aa16.61■□□□□ 0.25
CDH3-201ENST00000264012 HSP90AB2PQ58FF8 381 aa16.6■□□□□ 0.25
CDH3-201ENST00000264012 FMNL2Q96PY5 1086 aa16.6■□□□□ 0.25
CDH3-201ENST00000264012 IDH1O75874 414 aaKnown RBP16.6■□□□□ 0.25
CDH3-201ENST00000264012 UPF3BQ9BZI7 483 aaKnown RBP16.6■□□□□ 0.25
CDH3-201ENST00000264012 IGHMBP2P38935 993 aaKnown RBP16.59■□□□□ 0.25
CDH3-201ENST00000264012 METTL24Q5JXM2 366 aa16.59■□□□□ 0.25
CDH3-201ENST00000264012 BOLA2Q9H3K6 86 aa16.59■□□□□ 0.25
CDH3-201ENST00000264012 CCDC69A6NI79 296 aa16.59■□□□□ 0.25
CDH3-201ENST00000264012 CASTP20810 708 aaKnown RBP16.59■□□□□ 0.25
CDH3-201ENST00000264012 BICDL1Q6ZP65 573 aa16.59■□□□□ 0.25
CDH3-201ENST00000264012 CFAP43Q8NDM7 1665 aa16.59■□□□□ 0.25
CDH3-201ENST00000264012 ME1P48163 572 aa16.59■□□□□ 0.25
CDH3-201ENST00000264012 SPINK5Q9NQ38 1064 aaPredicted RBP16.58■□□□□ 0.25
CDH3-201ENST00000264012 TDO2P48775 406 aa16.58■□□□□ 0.24
CDH3-201ENST00000264012 BRPF3Q9ULD4 1205 aa16.58■□□□□ 0.24
CDH3-201ENST00000264012 ABCC10Q5T3U5 1492 aa16.58■□□□□ 0.24
CDH3-201ENST00000264012 SHANK2Q9UPX8 1470 aa16.58■□□□□ 0.24
CDH3-201ENST00000264012 NUP133Q8WUM0 1156 aa16.58■□□□□ 0.24
CDH3-201ENST00000264012 RAI14Q9P0K7 980 aa16.58■□□□□ 0.24
CDH3-201ENST00000264012 LRP2BPQ9P2M1 347 aa16.58■□□□□ 0.24
CDH3-201ENST00000264012 AKAP2Q9Y2D5 859 aa16.58■□□□□ 0.24
CDH3-201ENST00000264012 IL27Q8NEV9 243 aa16.57■□□□□ 0.24
CDH3-201ENST00000264012 PDILTQ8N807 584 aa16.57■□□□□ 0.24
CDH3-201ENST00000264012 TTC21AQ8NDW8 1320 aa16.57■□□□□ 0.24
CDH3-201ENST00000264012 RIMS2Q9UQ26 1411 aa16.57■□□□□ 0.24
CDH3-201ENST00000264012 TEX14Q8IWB6 1497 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms