RNA–Protein interactions for RNA: ENST00000221166.9

NEFM-201, Transcript of neurofilament medium, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEFM, Length 4,020 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEFM-201ENST00000221166 ZNF853P0CG23 659 aa13.68□□□□□ -0.22
NEFM-201ENST00000221166 HDGFP51858 240 aaKnown RBP13.68□□□□□ -0.22
NEFM-201ENST00000221166 NGDNQ8NEJ9 315 aaKnown RBP13.68□□□□□ -0.22
NEFM-201ENST00000221166 NEURL4Q96JN8 1562 aa13.68□□□□□ -0.22
NEFM-201ENST00000221166 CCDC173Q0VFZ6 552 aa13.68□□□□□ -0.22
NEFM-201ENST00000221166 FAM135BQ49AJ0 1406 aa13.68□□□□□ -0.22
NEFM-201ENST00000221166 BRPF1P55201 1214 aaPredicted RBP13.68□□□□□ -0.22
NEFM-201ENST00000221166 KLHL40Q2TBA0 621 aa13.68□□□□□ -0.22
NEFM-201ENST00000221166 G2E3Q7L622 706 aa13.68□□□□□ -0.22
NEFM-201ENST00000221166 CAMSAP1Q5T5Y3 1602 aa13.67□□□□□ -0.22
NEFM-201ENST00000221166 ARID3AQ99856 593 aa13.67□□□□□ -0.22
NEFM-201ENST00000221166 ERBB4Q15303 1308 aa13.66□□□□□ -0.22
NEFM-201ENST00000221166 PPLO60437 1756 aa13.66□□□□□ -0.22
NEFM-201ENST00000221166 PLCB2Q00722 1185 aa13.66□□□□□ -0.22
NEFM-201ENST00000221166 RIMS2Q9UQ26 1411 aa13.66□□□□□ -0.22
NEFM-201ENST00000221166 NEXMIFQ5QGS0 1516 aa13.66□□□□□ -0.22
NEFM-201ENST00000221166 MAP4K4O95819 1239 aaPredicted RBP13.66□□□□□ -0.22
NEFM-201ENST00000221166 LRRC7Q96NW7 1537 aa13.66□□□□□ -0.22
NEFM-201ENST00000221166 DDIT3P35638 169 aa13.66□□□□□ -0.22
NEFM-201ENST00000221166 MPNDQ8N594 471 aa13.66□□□□□ -0.22
NEFM-201ENST00000221166 COL3A1P02461 1466 aaPredicted RBP13.66□□□□□ -0.22
NEFM-201ENST00000221166 GNAI2P04899 355 aa13.65□□□□□ -0.22
NEFM-201ENST00000221166 UPF3BQ9BZI7 483 aaKnown RBP13.65□□□□□ -0.22
NEFM-201ENST00000221166 HECW2Q9P2P5 1572 aa13.65□□□□□ -0.22
NEFM-201ENST00000221166 MSH6P52701 1360 aa13.65□□□□□ -0.22
NEFM-201ENST00000221166 SLC26A8Q96RN1 970 aa13.65□□□□□ -0.22
NEFM-201ENST00000221166 IL1RAPL2Q9NP60 686 aa13.65□□□□□ -0.22
NEFM-201ENST00000221166 ZSCAN23Q3MJ62 389 aa13.65□□□□□ -0.22
NEFM-201ENST00000221166 CWC22Q9HCG8 908 aaKnown RBP13.65□□□□□ -0.22
NEFM-201ENST00000221166 SYCE3A1L190 88 aa13.64□□□□□ -0.23
NEFM-201ENST00000221166 EIF2S2P20042 333 aaKnown RBP13.64□□□□□ -0.23
NEFM-201ENST00000221166 OS9Q13438 667 aaPredicted RBP13.64□□□□□ -0.23
NEFM-201ENST00000221166 PTPRMP28827 1452 aa13.64□□□□□ -0.23
NEFM-201ENST00000221166 ADGRB2O60241 1585 aa13.64□□□□□ -0.23
NEFM-201ENST00000221166 FRMPD1Q5SYB0 1578 aa13.64□□□□□ -0.23
NEFM-201ENST00000221166 VSIG10Q8N0Z9 540 aa13.64□□□□□ -0.23
NEFM-201ENST00000221166 PDE1AP54750 535 aa13.63□□□□□ -0.23
NEFM-201ENST00000221166 KIAA1211Q6ZU35 1233 aa13.63□□□□□ -0.23
NEFM-201ENST00000221166 CD163L1Q9NR16 1453 aa13.63□□□□□ -0.23
NEFM-201ENST00000221166 VIRMAQ69YN4 1812 aaKnown RBP13.63□□□□□ -0.23
NEFM-201ENST00000221166 ACEP12821 1306 aa13.63□□□□□ -0.23
NEFM-201ENST00000221166 IFT172Q9UG01 1749 aa13.63□□□□□ -0.23
NEFM-201ENST00000221166 CHL1O00533 1208 aa13.63□□□□□ -0.23
NEFM-201ENST00000221166 PRIM1P49642 420 aaKnown RBP13.63□□□□□ -0.23
NEFM-201ENST00000221166 DNTTIP2Q5QJE6 756 aaKnown RBP13.63□□□□□ -0.23
NEFM-201ENST00000221166 LRRCC1Q9C099 1032 aa13.63□□□□□ -0.23
NEFM-201ENST00000221166 R3HCC1Q9Y3T6 440 aaKnown RBP13.63□□□□□ -0.23
NEFM-201ENST00000221166 PTCH1Q13635 1447 aa13.62□□□□□ -0.23
NEFM-201ENST00000221166 ZSCAN30Q86W11 494 aa13.62□□□□□ -0.23
NEFM-201ENST00000221166 ZC3H13Q5T200 1668 aaKnown RBP13.62□□□□□ -0.23
NEFM-201ENST00000221166 CCT4P50991 539 aaKnown RBP13.62□□□□□ -0.23
NEFM-201ENST00000221166 GDPD2Q9HCC8 539 aa13.62□□□□□ -0.23
NEFM-201ENST00000221166 TTC21BQ7Z4L5 1316 aa13.62□□□□□ -0.23
NEFM-201ENST00000221166 UBE2Q2Q8WVN8 375 aa13.61□□□□□ -0.23
NEFM-201ENST00000221166 LARP6Q9BRS8 491 aaKnown RBP13.61□□□□□ -0.23
NEFM-201ENST00000221166 LMBRD1Q9NUN5 540 aa13.61□□□□□ -0.23
NEFM-201ENST00000221166 EDC4Q6P2E9 1401 aaKnown RBP13.61□□□□□ -0.23
NEFM-201ENST00000221166 RBM10P98175 930 aaKnown RBP13.61□□□□□ -0.23
NEFM-201ENST00000221166 MTHFSDQ2M296 383 aaKnown RBP13.61□□□□□ -0.23
NEFM-201ENST00000221166 NUTM1Q86Y26 1132 aa13.61□□□□□ -0.23
NEFM-201ENST00000221166 TMX3Q96JJ7 454 aa13.61□□□□□ -0.23
NEFM-201ENST00000221166 RBSNQ9H1K0 784 aa13.61□□□□□ -0.23
NEFM-201ENST00000221166 PTPRCP08575 1304 aa13.61□□□□□ -0.23
NEFM-201ENST00000221166 ARHGEF28Q8N1W1 1705 aaKnown RBP13.61□□□□□ -0.23
NEFM-201ENST00000221166 METP08581 1390 aa13.6□□□□□ -0.23
NEFM-201ENST00000221166 RTL1A6NKG5 1358 aa13.6□□□□□ -0.23
NEFM-201ENST00000221166 SURF6O75683 361 aaKnown RBP13.6□□□□□ -0.23
NEFM-201ENST00000221166 MX1P20591 662 aa13.6□□□□□ -0.23
NEFM-201ENST00000221166 NLRP6P59044 892 aa13.6□□□□□ -0.23
NEFM-201ENST00000221166 USP32Q8NFA0 1604 aa13.6□□□□□ -0.23
NEFM-201ENST00000221166 NCOA3Q9Y6Q9 1424 aa13.6□□□□□ -0.23
NEFM-201ENST00000221166 GNAI3P08754 354 aa13.6□□□□□ -0.23
NEFM-201ENST00000221166 LRRFIP2Q9Y608 721 aaKnown RBP13.6□□□□□ -0.23
NEFM-201ENST00000221166 UBTFL1P0CB47 393 aaPredicted RBP13.59□□□□□ -0.23
NEFM-201ENST00000221166 XPCQ01831 940 aaPredicted RBP13.59□□□□□ -0.23
NEFM-201ENST00000221166 ARHGEF40Q8TER5 1519 aa13.59□□□□□ -0.23
NEFM-201ENST00000221166 CCDC30Q5VVM6 783 aa13.59□□□□□ -0.23
NEFM-201ENST00000221166 FAM13BQ9NYF5 915 aa13.59□□□□□ -0.23
NEFM-201ENST00000221166 PIK3C2BO00750 1634 aa13.59□□□□□ -0.23
NEFM-201ENST00000221166 ARHGAP31Q2M1Z3 1444 aa13.58□□□□□ -0.23
NEFM-201ENST00000221166 MED14O60244 1454 aa13.58□□□□□ -0.23
NEFM-201ENST00000221166 FLIIQ13045 1269 aa13.58□□□□□ -0.24
NEFM-201ENST00000221166 DTNBO60941 627 aa13.58□□□□□ -0.24
NEFM-201ENST00000221166 PIK3R4Q99570 1358 aa13.58□□□□□ -0.24
NEFM-201ENST00000221166 ESYT1Q9BSJ8 1104 aa13.57□□□□□ -0.24
NEFM-201ENST00000221166 PRR36Q9H6K5 1346 aa13.57□□□□□ -0.24
NEFM-201ENST00000221166 ALKQ9UM73 1620 aa13.57□□□□□ -0.24
NEFM-201ENST00000221166 PNMA6EA0A0J9YXQ4 647 aa13.57□□□□□ -0.24
NEFM-201ENST00000221166 KCNJ4P48050 445 aa13.57□□□□□ -0.24
NEFM-201ENST00000221166 SYAP1Q96A49 352 aaPredicted RBP13.57□□□□□ -0.24
NEFM-201ENST00000221166 NEO1Q92859 1461 aa13.57□□□□□ -0.24
NEFM-201ENST00000221166 USHBP1Q8N6Y0 703 aa13.56□□□□□ -0.24
NEFM-201ENST00000221166 GPT2Q8TD30 523 aa13.56□□□□□ -0.24
NEFM-201ENST00000221166 PALD1Q9ULE6 856 aa13.56□□□□□ -0.24
NEFM-201ENST00000221166 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.56□□□□□ -0.24
NEFM-201ENST00000221166 MAP3K19Q56UN5 1328 aa13.56□□□□□ -0.24
NEFM-201ENST00000221166 HDGFL1Q5TGJ6 251 aa13.56□□□□□ -0.24
NEFM-201ENST00000221166 TMEM63CQ9P1W3 806 aa13.55□□□□□ -0.24
NEFM-201ENST00000221166 NSFL1CQ9UNZ2 370 aaKnown RBP13.55□□□□□ -0.24
NEFM-201ENST00000221166 LMOD2Q6P5Q4 547 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms